Rh7DG364000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000124
Physical Location & Seq
Forward (+)
48514890 .. 48515234
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG364000.1

Sequence Viewer

Length: 345 bp
ATGGTGGGCGACAATTGGAGAATCGCTACGAGCAGATTGGCCGGCTTACCGGACATTGAGTACTTGGTACAGGTCGCAGAAGAAGGACCTGTAAAGTGGATGAAAGATCGATGGAAAATATTTCTGGATCGTATCAGAGATGGAGAGGGACGGTTGGTATTGTTGTTCGAATACAACGGCAACATGGAGTTCACCATTAAGAGATTTAATGTCATTGGGCAGTTGATGCTGCAGAACCCGAAACTGCCCACCGGATATGAACTGGACCGAGCAGGGACTTTGACGGGGCTATTGGACTCCTTCATGTGGGACGCATGGGATCAGAACGTCACAGTGGTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.2

Weight (kDa)

4.9

Isoelectric Point (pI)

23.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 135, 327
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 2 cut(s) 62, 69
AfiI CCNNNNNNNGG 1 cut(s) 306
AleI CACNNNNGTG 1 cut(s) 335
AlwI GGATC 2 cut(s) 135, 327
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 86, 265
AsuHPI GGTGA 1 cut(s) 184
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 2 cut(s) 86, 265
BbvI GCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 105, 134
BceAI ACGGC 1 cut(s) 193
BfmI CTRYAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
BmcAI AGTACT 1 cut(s) 62
Bme18I GGWCC 2 cut(s) 86, 265
BmgT120I GGNCC 2 cut(s) 86, 265
BmsI GCATC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 109
BsaWI WCCGGW 2 cut(s) 49, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 267
BseCI ATCGAT 1 cut(s) 109
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 109
BsiSI CCGG 3 cut(s) 42, 50, 252
BslFI GGGAC 3 cut(s) 162, 289, 323
BslI CCNNNNNNNGG 1 cut(s) 306
BsmFI GGGAC 3 cut(s) 162, 289, 323
BsnI GGCC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 168
Bsp143I GATC 3 cut(s) 106, 127, 319
BspANI GGCC 1 cut(s) 41
BspDI ATCGAT 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 2 cut(s) 135, 327
BspT104I TTCGAA 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 3 cut(s) 106, 127, 319
Bst4CI ACNGT 2 cut(s) 153, 334
BstAPI GCANNNNNTGC 1 cut(s) 226
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 3 cut(s) 109, 130, 322
BstMBI GATC 3 cut(s) 106, 127, 319
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 216
Bsu15I ATCGAT 1 cut(s) 109
BsuRI GGCC 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 109
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 86, 265
ClaI ATCGAT 1 cut(s) 109
CseI GACGC 1 cut(s) 320
Csp6I GTAC 2 cut(s) 61, 68
CviAII CATG 3 cut(s) 184, 304, 315
CviJI RGCY 3 cut(s) 41, 45, 289
CviKI_1 RGCY 3 cut(s) 41, 45, 289
CviQI GTAC 2 cut(s) 61, 68
DpnI GATC 3 cut(s) 108, 129, 321
DpnII GATC 3 cut(s) 106, 127, 319
EaeI YGGCCR 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 86, 265
EcoO109I RGGNCCY 1 cut(s) 86
FaeI CATG 3 cut(s) 187, 307, 318
FaiI YATR 4 cut(s) 185, 258, 305, 316
FaqI GGGAC 3 cut(s) 162, 289, 323
FatI CATG 3 cut(s) 183, 303, 314
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 41
HapII CCGG 3 cut(s) 42, 50, 252
HgaI GACGC 1 cut(s) 320
Hin1II CATG 3 cut(s) 187, 307, 318
HinfI GANTC 2 cut(s) 21, 296
HpaII CCGG 3 cut(s) 42, 50, 252
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 137, 324
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 77, 310
HpyCH4III ACNGT 2 cut(s) 153, 334
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 3 cut(s) 187, 307, 318
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 106, 127, 319
LpnPI CCDG 8 cut(s) 55, 56, 63, 102, 110, 248, 258, 265
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 216
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 108, 129, 321
MboI GATC 3 cut(s) 106, 127, 319
MboII GAAGA 1 cut(s) 92
MfeI CAATTG 1 cut(s) 13
MluCI AATT 1 cut(s) 13
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 2 cut(s) 198, 207
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 3 cut(s) 42, 50, 252
MunI CAATTG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 226
NaeI GCCGGC 1 cut(s) 43
NdeII GATC 3 cut(s) 106, 127, 319
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 3 cut(s) 187, 307, 318
NmuCI GTSAC 1 cut(s) 328
NspV TTCGAA 1 cut(s) 168
OliI CACNNNNGTG 1 cut(s) 335
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 231
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
PspPI GGNCC 2 cut(s) 86, 265
PspPPI RGGWCCY 1 cut(s) 86
PstI CTGCAG 1 cut(s) 234
RsaI GTAC 2 cut(s) 62, 69
RsaNI GTAC 2 cut(s) 61, 68
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 2 cut(s) 198, 207
SatI GCNGC 1 cut(s) 230
Sau3AI GATC 3 cut(s) 106, 127, 319
Sau96I GGNCC 2 cut(s) 86, 265
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 1 cut(s) 290
SetI ASST 3 cut(s) 75, 91, 330
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 230
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 2 cut(s) 86, 265
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 1 cut(s) 13
SspI AATATT 1 cut(s) 120
TaaI ACNGT 2 cut(s) 153, 334
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 109, 168
TaqII GACCGA 1 cut(s) 282
TasI AATT 1 cut(s) 13
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 198, 207
Tru9I TTAA 2 cut(s) 198, 207
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 116, 273, 292
TspRI CASTG 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 86, 265
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.