Rroxscaffold_1G00069000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000124
Physical Location & Seq
Forward (+)
90041660 .. 90042383
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069000.1

Sequence Viewer

Length: 615 bp
ATGCACATGAAGGACGACAACCAACCGATCGCTGATCCGTATTTGGACGGATTACCGGACGTTCCGTACTTCGTCGAAATTACACCACAAGGATCGGACAAGTGGTTTGACGGTCATTGGACCACTTTTGTTAACCGTGTCGGCAATGGTGAAGGACGGATGGTGTTGTGGTTCCATTACGGAGGGAATATGACCTTCATCGCACGCCGCTTCGATGTTAACGGCCGGTTGATGGTCGGAGCTCCCAAACCGCCCTTTGGATTTGTGGTGGACCGATCAATGGAGCCGATCGGTATTTTGGACTCGTTCATGTCCGACATTTGGGATCGGAAAATAAGCTGTGGTAAGTGCCTATTGTACGAAGAGGTTCTCTCGCGTGACAAGCTAGTGGCGTACGGTGCGCCGGGCAGATGTGAGCTCCGTTGGGAAACAATTCCGTCAAGGCGGTGGACGGTTCACATCACAGGAAACAAAGAGTTGACATTCGGTTCTGGATGGGACCGCTTTCAAACGGATGCGGGGTTGGACGATTACGTGTGCCGTGTTTGCACGCGCATTGGTCGATTGTGTTTCTCTGTTCAAGTATTCAACATCAAGAGAGGGATTCGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.47

Weight (kDa)

7.62

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 376, 553
AciI CCGC 5 cut(s) 208, 251, 445, 502, 518
AclWI GGATC 3 cut(s) 29, 100, 333
AcoI YGGCCR 1 cut(s) 223
AfaI GTAC 3 cut(s) 68, 359, 395
AfiI CCNNNNNNNGG 4 cut(s) 232, 257, 280, 321
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 3 cut(s) 509, 581, 589
AluBI AGCT 4 cut(s) 242, 339, 385, 418
AluI AGCT 4 cut(s) 242, 339, 385, 418
Alw21I GWGCWC 2 cut(s) 244, 420
AlwI GGATC 3 cut(s) 29, 100, 333
AoxI GGCC 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
Asp700I GAANNNNTTC 2 cut(s) 366, 432
AspLEI GCGC 2 cut(s) 403, 555
AspS9I GGNCC 3 cut(s) 120, 271, 499
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 3 cut(s) 120, 271, 499
BanII GRGCYC 2 cut(s) 244, 420
Bbv12I GWGCWC 2 cut(s) 244, 420
BccI CCATC 3 cut(s) 154, 226, 489
BceAI ACGGC 2 cut(s) 238, 525
BcnI CCSGG 1 cut(s) 405
BfaI CTAG 1 cut(s) 386
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 3 cut(s) 120, 271, 499
BmgT120I GGNCC 3 cut(s) 120, 271, 499
BmiI GGNNCC 3 cut(s) 173, 285, 500
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpuMI CCSGG 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 535
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 257, 280, 321
Bse118I RCCGGY 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 151
BseGI GGATG 3 cut(s) 165, 500, 520
BseLI CCNNNNNNNGG 4 cut(s) 232, 257, 280, 321
BseMI GCAATG 1 cut(s) 151
BseX3I CGGCCG 1 cut(s) 223
Bsh1236I CGCG 2 cut(s) 376, 553
Bsh1285I CGRYCG 3 cut(s) 30, 226, 291
BshFI GGCC 1 cut(s) 225
BsiEI CGRYCG 3 cut(s) 30, 226, 291
BsiHKAI GWGCWC 2 cut(s) 244, 420
BsiSI CCGG 3 cut(s) 56, 226, 404
BsiWI CGTACG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 4 cut(s) 232, 257, 280, 321
BsmFI GGGAC 1 cut(s) 512
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 244, 420
Bsp143I GATC 6 cut(s) 27, 34, 92, 275, 288, 325
BspACI CCGC 5 cut(s) 208, 251, 445, 502, 518
BspANI GGCC 1 cut(s) 225
BspFNI CGCG 2 cut(s) 376, 553
BspLI GGNNCC 3 cut(s) 173, 285, 500
BspPI GGATC 3 cut(s) 29, 100, 333
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 225
BssMI GATC 6 cut(s) 27, 34, 92, 275, 288, 325
Bst4CI ACNGT 4 cut(s) 113, 137, 398, 454
Bst6I CTCTTC 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 205, 551
BstF5I GGATG 3 cut(s) 165, 500, 520
BstFNI CGCG 2 cut(s) 376, 553
BstHHI GCGC 2 cut(s) 403, 555
BstKTI GATC 6 cut(s) 30, 37, 95, 278, 291, 328
BstMBI GATC 6 cut(s) 27, 34, 92, 275, 288, 325
BstMCI CGRYCG 3 cut(s) 30, 226, 291
BstMWI GCNNNNNNNGC 3 cut(s) 382, 398, 546
BstSCI CCNGG 1 cut(s) 403
BstUI CGCG 2 cut(s) 376, 553
BstZI CGGCCG 1 cut(s) 223
BsuRI GGCC 1 cut(s) 225
BtgZI GCGATG 1 cut(s) 184
BtsCI GGATG 3 cut(s) 165, 500, 520
Cac8I GCNNGC 2 cut(s) 205, 551
CfoI GCGC 2 cut(s) 403, 555
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 3 cut(s) 120, 271, 499
Csp6I GTAC 3 cut(s) 67, 358, 394
CviAII CATG 2 cut(s) 7, 310
CviJI RGCY 6 cut(s) 225, 242, 286, 339, 385, 418
CviKI_1 RGCY 6 cut(s) 225, 242, 286, 339, 385, 418
CviQI GTAC 3 cut(s) 67, 358, 394
DpnI GATC 6 cut(s) 29, 36, 94, 277, 290, 327
DpnII GATC 6 cut(s) 27, 34, 92, 275, 288, 325
EaeI YGGCCR 1 cut(s) 223
EagI CGGCCG 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Ecl136II GAGCTC 2 cut(s) 242, 418
EclXI CGGCCG 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 244, 420
Eco47I GGWCC 3 cut(s) 120, 271, 499
Eco52I CGGCCG 1 cut(s) 223
Eco53kI GAGCTC 2 cut(s) 242, 418
EcoICRI GAGCTC 2 cut(s) 242, 418
EcoT38I GRGCYC 2 cut(s) 244, 420
FaeI CATG 2 cut(s) 10, 313
FaiI YATR 3 cut(s) 8, 191, 311
FaqI GGGAC 1 cut(s) 512
FatI CATG 2 cut(s) 6, 309
FauI CCCGC 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 3 cut(s) 172, 507, 527
FriOI GRGCYC 2 cut(s) 244, 420
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 402, 554
GluI GCNGC 1 cut(s) 208
HaeIII GGCC 1 cut(s) 225
HapII CCGG 3 cut(s) 56, 226, 404
HhaI GCGC 2 cut(s) 403, 555
Hin1II CATG 2 cut(s) 10, 313
Hin6I GCGC 2 cut(s) 401, 553
HinP1I GCGC 2 cut(s) 401, 553
HincII GTYRAC 3 cut(s) 133, 220, 480
HindII GTYRAC 3 cut(s) 133, 220, 480
HinfI GANTC 2 cut(s) 302, 604
HpaI GTTAAC 2 cut(s) 133, 220
HpaII CCGG 3 cut(s) 56, 226, 404
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 6 cut(s) 133, 220, 271, 450, 457, 480
Hpy188I TCNGA 4 cut(s) 97, 239, 316, 330
Hpy188III TCNNGA 2 cut(s) 492, 595
Hpy8I GTNNAC 6 cut(s) 133, 220, 271, 450, 457, 480
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 4, 146, 205
HpyCH4III ACNGT 4 cut(s) 113, 137, 398, 454
HpyCH4IV ACGT 2 cut(s) 60, 534
HpyCH4V TGCA 2 cut(s) 4, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 382, 398, 546
HpySE526I ACGT 2 cut(s) 60, 534
Hsp92II CATG 2 cut(s) 10, 313
HspAI GCGC 2 cut(s) 401, 553
KspAI GTTAAC 2 cut(s) 133, 220
Kzo9I GATC 6 cut(s) 27, 34, 92, 275, 288, 325
LmnI GCTCC 4 cut(s) 239, 247, 283, 423
LpnPI CCDG 5 cut(s) 69, 239, 417, 450, 477
LweI GCATC 1 cut(s) 505
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 60, 534
MaeIII GTNAC 1 cut(s) 377
MalI GATC 6 cut(s) 29, 36, 94, 277, 290, 327
MboI GATC 6 cut(s) 27, 34, 92, 275, 288, 325
MboII GAAGA 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 244, 420
MluCI AATT 2 cut(s) 78, 432
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 3 cut(s) 217, 339, 504
MnlI CCTC 3 cut(s) 176, 358, 593
MroXI GAANNNNTTC 2 cut(s) 366, 432
MseI TTAA 2 cut(s) 132, 219
MspI CCGG 3 cut(s) 56, 226, 404
MspR9I CCNGG 1 cut(s) 405
MvnI CGCG 2 cut(s) 376, 553
MwoI GCNNNNNNNGC 3 cut(s) 382, 398, 546
NciI CCSGG 1 cut(s) 405
NdeII GATC 6 cut(s) 27, 34, 92, 275, 288, 325
NlaIII CATG 2 cut(s) 10, 313
NlaIV GGNNCC 3 cut(s) 173, 285, 500
NmuCI GTSAC 1 cut(s) 377
PdmI GAANNNNTTC 2 cut(s) 366, 432
PfeI GAWTC 1 cut(s) 604
Pfl23II CGTACG 1 cut(s) 393
PkrI GCNGC 1 cut(s) 209
Ple19I CGATCG 2 cut(s) 30, 291
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 535
Psp124BI GAGCTC 2 cut(s) 244, 420
PspLI CGTACG 1 cut(s) 393
PspN4I GGNNCC 3 cut(s) 173, 285, 500
PspPI GGNCC 3 cut(s) 120, 271, 499
PvuI CGATCG 2 cut(s) 30, 291
RsaI GTAC 3 cut(s) 68, 359, 395
RsaNI GTAC 3 cut(s) 67, 358, 394
SacI GAGCTC 2 cut(s) 244, 420
SaqAI TTAA 2 cut(s) 132, 219
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 6 cut(s) 27, 34, 92, 275, 288, 325
Sau96I GGNCC 3 cut(s) 120, 271, 499
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 2 cut(s) 244, 420
SetI ASST 8 cut(s) 63, 197, 244, 341, 369, 387, 420, 537
SfaNI GCATC 1 cut(s) 505
SinI GGWCC 3 cut(s) 120, 271, 499
Sse9I AATT 2 cut(s) 78, 432
SsiI CCGC 5 cut(s) 208, 251, 445, 502, 518
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 2 cut(s) 244, 420
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 4 cut(s) 113, 137, 398, 454
TaiI ACGT 2 cut(s) 63, 537
TaqI TCGA 3 cut(s) 75, 213, 562
TaqII GACCGA 1 cut(s) 288
TasI AATT 2 cut(s) 78, 432
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 604
Tru1I TTAA 2 cut(s) 132, 219
Tru9I TTAA 2 cut(s) 132, 219
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 23, 187, 298
TspGWI ACGGA 8 cut(s) 27, 54, 63, 172, 195, 410, 426, 527
VpaK11BI GGWCC 3 cut(s) 120, 271, 499
XmnI GAANNNNTTC 2 cut(s) 366, 432
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.