Rmu_sc0005712.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005712.1
OG0000124
Physical Location & Seq
Reverse (-)
102537 .. 103538
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005712.1_g000018.1.cds

Sequence Viewer

Length: 804 bp
atggcaggggatgacaatacggttgcagttcttaagttgatcggattacgcaacaatgcatggaaggtgcatgtggtgtccaaacgtagtggaaagtttttttctcgcggatgggactggtttctacgggtcacttgtggagtagaagagacagtgacacttatgtttcgttacgaaggaaatatgacatttagtttggttcgattcggagagcacggacaggttctgtactttcttccatggctgactgcagacaatcctgccaacaatctgaaacatatatctgataactttctagggtttgccgtcaacacatggggaccaagtgaaaccccgcccgcaatcggatatggcttcctgctttcgagactaatatgggatggagtgatactggggaagataacatttgagctgtttcagaagaaagggcaatactggatgaccgaacccgcgatggttgacgatgcactcgtgttcagtgacgcatggtataattttgtcaatgcaattggtttagacgagaacaaatgtgcaatcttcaaatatgctgaaaatttggcattcactgtaaatgtctttgacatgcccctgggtaccattgcaatggataatgtgcctgctcgaagaataggaggttcggaggaaggccacatggagggggtttcatataagacggtccttggagacatggttggcgacggaggggaactcttggatgtgcatcgtacccttttgccgctaccgaattgcttgttgacgatccaaaagggtcatggggttagtactttaatattgcaaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.81

Weight (kDa)

5.51

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 593
AccB1I GGYRCC 1 cut(s) 593
AccII CGCG 2 cut(s) 108, 452
AciI CCGC 5 cut(s) 108, 335, 339, 450, 737
AclWI GGATC 1 cut(s) 754
AcsI RAATTY 1 cut(s) 553
AfaI GTAC 4 cut(s) 230, 595, 727, 784
AfiI CCNNNNNNNGG 2 cut(s) 344, 655
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 541
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 3 cut(s) 143, 361, 678
AlwI GGATC 1 cut(s) 754
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 646
ApoI RAATTY 1 cut(s) 553
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
Asp718I GGTACC 1 cut(s) 593
AspS9I GGNCC 2 cut(s) 320, 676
AvaII GGWCC 2 cut(s) 320, 676
BanI GGYRCC 1 cut(s) 593
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 3 cut(s) 105, 374, 448
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 590
BcoDI GTCTC 3 cut(s) 143, 361, 678
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 737
BlsI GCNGC 1 cut(s) 738
BmcAI AGTACT 1 cut(s) 784
Bme1390I CCNGG 1 cut(s) 590
Bme18I GGWCC 2 cut(s) 320, 676
BmgT120I GGNCC 2 cut(s) 320, 676
BmiI GGNNCC 2 cut(s) 321, 595
BmrFI CCNGG 1 cut(s) 590
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 2 cut(s) 454, 730
BmuI ACTGGG 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 693, 725
BsaBI GATNNNNATC 1 cut(s) 720
BsaJI CCNNGG 4 cut(s) 239, 588, 589, 679
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 655
Bse1I ACTGG 3 cut(s) 122, 396, 440
Bse3DI GCAATG 2 cut(s) 597, 609
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 4 cut(s) 239, 588, 589, 679
BseGI GGATG 5 cut(s) 16, 116, 385, 444, 721
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 2 cut(s) 344, 655
BseMI GCAATG 2 cut(s) 597, 609
BseNI ACTGG 3 cut(s) 122, 396, 440
Bsh1236I CGCG 2 cut(s) 108, 452
BshFI GGCC 1 cut(s) 648
BshNI GGYRCC 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 216
BslFI GGGAC 2 cut(s) 128, 333
BslI CCNNNNNNNGG 2 cut(s) 344, 655
BsmAI GTCTC 3 cut(s) 143, 361, 678
BsmFI GGGAC 2 cut(s) 128, 333
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 39, 759
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 5 cut(s) 108, 335, 339, 450, 737
BspANI GGCC 1 cut(s) 648
BspFNI CGCG 2 cut(s) 108, 452
BspLI GGNNCC 2 cut(s) 321, 595
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 1 cut(s) 754
BspT107I GGYRCC 1 cut(s) 593
BspTI CTTAAG 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 597, 609
BsrI ACTGG 3 cut(s) 122, 396, 440
BssECI CCNNGG 4 cut(s) 239, 588, 589, 679
BssMI GATC 2 cut(s) 39, 759
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 239, 679
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 4 cut(s) 22, 154, 568, 676
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 339, 618
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 5 cut(s) 16, 116, 385, 444, 721
BstFNI CGCG 2 cut(s) 108, 452
BstKTI GATC 2 cut(s) 42, 762
BstMAI GTCTC 3 cut(s) 143, 361, 678
BstMBI GATC 2 cut(s) 39, 759
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 2 cut(s) 74, 586
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 2 cut(s) 108, 452
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuRI GGCC 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 467
BtsCI GGATG 5 cut(s) 16, 116, 385, 444, 721
BtsIMutI CAGTG 3 cut(s) 159, 484, 564
Cac8I GCNNGC 2 cut(s) 339, 618
CaiI CAGNNNCTG 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 320, 676
CseI GACGC 1 cut(s) 491
Csp6I GTAC 4 cut(s) 229, 594, 726, 783
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 9 cut(s) 60, 71, 240, 315, 486, 583, 652, 688, 773
CviJI RGCY 4 cut(s) 244, 354, 412, 648
CviKI_1 RGCY 4 cut(s) 244, 354, 412, 648
CviQI GTAC 4 cut(s) 229, 594, 726, 783
DpnI GATC 2 cut(s) 41, 761
DpnII GATC 2 cut(s) 39, 759
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 239, 679
Eco47I GGWCC 2 cut(s) 320, 676
EcoRII CCWGG 1 cut(s) 588
EcoT14I CCWWGG 2 cut(s) 239, 679
EcoT22I ATGCAT 1 cut(s) 61
ErhI CCWWGG 2 cut(s) 239, 679
FaeI CATG 9 cut(s) 63, 74, 243, 318, 489, 586, 655, 691, 776
FaqI GGGAC 2 cut(s) 128, 333
FatI CATG 9 cut(s) 59, 70, 239, 314, 485, 582, 651, 687, 772
FauI CCCGC 3 cut(s) 342, 346, 457
Fnu4HI GCNGC 1 cut(s) 737
FokI GGATG 5 cut(s) 23, 123, 392, 451, 728
Fsp4HI GCNGC 1 cut(s) 737
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 737
HaeIII GGCC 1 cut(s) 648
HgaI GACGC 1 cut(s) 491
Hin1II CATG 9 cut(s) 63, 74, 243, 318, 489, 586, 655, 691, 776
HincII GTYRAC 3 cut(s) 310, 460, 756
HindII GTYRAC 3 cut(s) 310, 460, 756
HinfI GANTC 1 cut(s) 204
Hpy166II GTNNAC 3 cut(s) 310, 460, 756
Hpy188I TCNGA 7 cut(s) 44, 209, 273, 286, 347, 420, 640
Hpy188III TCNNGA 1 cut(s) 366
Hpy8I GTNNAC 3 cut(s) 310, 460, 756
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 3 cut(s) 58, 170, 638
HpyCH4III ACNGT 4 cut(s) 22, 154, 568, 676
HpyCH4IV ACGT 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 9 cut(s) 63, 74, 243, 318, 489, 586, 655, 691, 776
KpnI GGTACC 1 cut(s) 597
Kzo9I GATC 2 cut(s) 39, 759
LpnPI CCDG 9 cut(s) 103, 206, 273, 371, 377, 421, 575, 602, 630
LweI GCATC 2 cut(s) 454, 730
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 4 cut(s) 130, 154, 170, 479
MalI GATC 2 cut(s) 41, 761
MboI GATC 2 cut(s) 39, 759
MboII GAAGA 6 cut(s) 158, 227, 409, 433, 529, 636
MfeI CAATTG 1 cut(s) 507
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 4 cut(s) 493, 507, 553, 745
MnlI CCTC 4 cut(s) 626, 634, 649, 695
Mph1103I ATGCAT 1 cut(s) 61
MseI TTAA 2 cut(s) 33, 788
MslI CAYNNNNRTG 1 cut(s) 602
MspCI CTTAAG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 590
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 1 cut(s) 590
MvnI CGCG 2 cut(s) 108, 452
NcoI CCATGG 1 cut(s) 239
NdeII GATC 2 cut(s) 39, 759
NlaIII CATG 9 cut(s) 63, 74, 243, 318, 489, 586, 655, 691, 776
NlaIV GGNNCC 2 cut(s) 321, 595
NmuCI GTSAC 3 cut(s) 130, 154, 479
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 2 cut(s) 74, 586
PasI CCCWGGG 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PctI GAATGC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 2 cut(s) 321, 595
PspPI GGNCC 2 cut(s) 320, 676
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 226
RsaI GTAC 4 cut(s) 230, 595, 727, 784
RsaNI GTAC 4 cut(s) 229, 594, 726, 783
RseI CAYNNNNRTG 1 cut(s) 602
SaqAI TTAA 2 cut(s) 33, 788
SatI GCNGC 1 cut(s) 737
Sau3AI GATC 2 cut(s) 39, 759
Sau96I GGNCC 2 cut(s) 320, 676
ScaI AGTACT 1 cut(s) 784
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 1 cut(s) 216
SetI ASST 5 cut(s) 69, 88, 225, 414, 637
SfaNI GCATC 2 cut(s) 454, 730
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 2 cut(s) 320, 676
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 4 cut(s) 493, 507, 553, 745
SsiI CCGC 5 cut(s) 108, 335, 339, 450, 737
SspI AATATT 1 cut(s) 792
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 2 cut(s) 239, 679
TaaI ACNGT 4 cut(s) 22, 154, 568, 676
TaiI ACGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 202, 365, 622
TaqII GACCGA 1 cut(s) 458
TasI AATT 4 cut(s) 493, 507, 553, 745
TatI WGTACW 2 cut(s) 228, 782
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 33, 788
Tru9I TTAA 2 cut(s) 33, 788
TscAI CASTG 3 cut(s) 159, 484, 571
TseFI GTSAC 3 cut(s) 130, 154, 479
Tsp45I GTSAC 3 cut(s) 130, 154, 479
TspDTI ATGAA 1 cut(s) 654
TspGWI ACGGA 2 cut(s) 231, 714
TspRI CASTG 3 cut(s) 159, 484, 571
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 320, 676
XapI RAATTY 1 cut(s) 553
XceI RCATGY 2 cut(s) 74, 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 770
XspI CTAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 784
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.