Rorug05G0102900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000124
Physical Location & Seq
Reverse (-)
9033878 .. 9036036
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0102900.1

Sequence Viewer

Length: 537 bp
ATGGTCGCTCTCAAGTTTCACCAGTACCAGGTGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCCAAGATCTACCGCATGAAGCTTTGGCACACCAATGAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAAATGCTTGCCATCAATGAGATTTTTGAGAAGAAACCTACTGTTGTTGAGAACTATGGTATTTGGTTGAGGTATCAAAGCAGGACAGGGTATCACAACATGTACAAGGAGTACCGTGACACCACTCTGAATGGGGCTGTGGATCAGATGTACACTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACTGCCACAATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGATTTCCAGGAAGGTCAGGCCACCAACCAGGAAGTTGAAGACCACGTACAAGGCATCAAGGCCCAACTTGTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

178

Amino Acids

21.22

Weight (kDa)

10.33

Isoelectric Point (pI)

23.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18A PF01775 7 - 128 1e-23 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 34, 129
AccII CGCG 1 cut(s) 114
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 324
AcoI YGGCCR 1 cut(s) 172
AcuI CTGAAG 2 cut(s) 161, 170
AfaI GTAC 6 cut(s) 26, 278, 287, 326, 421, 506
AfiI CCNNNNNNNGG 3 cut(s) 28, 34, 129
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 496
AjnI CCWGG 3 cut(s) 27, 464, 485
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 4 cut(s) 91, 148, 398, 403
AluI AGCT 4 cut(s) 91, 148, 398, 403
AlwI GGATC 1 cut(s) 324
AoxI GGCC 3 cut(s) 172, 476, 518
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 11, 169
BalI TGGCCA 1 cut(s) 174
BanII GRGCYC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 488, 520
BbsI GAAGAC 1 cut(s) 503
BccI CCATC 2 cut(s) 194, 328
BciT130I CCWGG 3 cut(s) 29, 466, 487
BglII AGATCT 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 399
Bme1390I CCNGG 3 cut(s) 29, 466, 487
BmgT120I GGNCC 1 cut(s) 519
BmrFI CCNGG 3 cut(s) 29, 466, 487
BmsI GCATC 3 cut(s) 46, 375, 521
BpiI GAAGAC 1 cut(s) 503
Bpu1102I GCTNAGC 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 504
BsaJI CCNNGG 2 cut(s) 51, 60
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 34, 129
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 3 cut(s) 29, 466, 487
BseDI CCNNGG 2 cut(s) 51, 60
BseGI GGATG 2 cut(s) 61, 366
BseLI CCNNNNNNNGG 3 cut(s) 28, 34, 129
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 174, 478, 520
BslI CCNNNNNNNGG 3 cut(s) 28, 34, 129
BsnI GGCC 3 cut(s) 174, 478, 520
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1407I TGTACA 2 cut(s) 276, 324
Bsp143I GATC 3 cut(s) 75, 316, 444
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 1 cut(s) 82
BspANI GGCC 3 cut(s) 174, 478, 520
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 114
BspPI GGATC 1 cut(s) 324
BspQI GCTCTTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 175
BsrGI TGTACA 2 cut(s) 276, 324
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 51, 60
BssMI GATC 3 cut(s) 75, 316, 444
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 29, 466, 487
Bst4CI ACNGT 2 cut(s) 217, 290
Bst6I CTCTTC 1 cut(s) 158
BstAUI TGTACA 2 cut(s) 276, 324
BstBAI YACGTR 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 330, 399
BstF5I GGATG 2 cut(s) 61, 366
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 3 cut(s) 78, 319, 447
BstMBI GATC 3 cut(s) 75, 316, 444
BstNI CCWGG 3 cut(s) 29, 466, 487
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 3 cut(s) 27, 464, 485
BstUI CGCG 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 3 cut(s) 174, 478, 520
BtsCI GGATG 2 cut(s) 61, 366
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 519
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 6 cut(s) 25, 277, 286, 325, 420, 505
CviAII CATG 2 cut(s) 85, 274
CviQI GTAC 6 cut(s) 25, 277, 286, 325, 420, 505
DdeI CTNAG 2 cut(s) 330, 399
DpnI GATC 3 cut(s) 77, 318, 446
DpnII GATC 3 cut(s) 75, 316, 444
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 161, 170
EcoRII CCWGG 3 cut(s) 27, 464, 485
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 88, 277
FaiI YATR 3 cut(s) 86, 231, 275
FatI CATG 2 cut(s) 84, 273
FokI GGATG 2 cut(s) 68, 353
FriOI GRGCYC 1 cut(s) 46
GlaI GCGC 1 cut(s) 115
GsaI CCCAGC 1 cut(s) 398
HaeIII GGCC 3 cut(s) 174, 478, 520
HhaI GCGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 88, 277
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 2 cut(s) 89, 401
HphI GGTGA 2 cut(s) 11, 169
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 303, 321
Hpy188III TCNNGA 2 cut(s) 139, 379
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 148, 463
HpyCH4III ACNGT 2 cut(s) 217, 290
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 2 cut(s) 366, 408
HpyF3I CTNAG 2 cut(s) 330, 399
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 2 cut(s) 88, 277
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 75, 316, 444
LguI GCTCTTC 1 cut(s) 158
LweI GCATC 3 cut(s) 46, 375, 521
MabI ACCWGGT 1 cut(s) 27
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 290
MalI GATC 3 cut(s) 77, 318, 446
MboI GATC 3 cut(s) 75, 316, 444
MboII GAAGA 6 cut(s) 154, 163, 172, 175, 217, 508
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 2 cut(s) 428, 436
MluNI TGGCCA 1 cut(s) 174
MnlI CCTC 4 cut(s) 55, 100, 237, 405
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
MslI CAYNNNNRTG 2 cut(s) 102, 332
Msp20I TGGCCA 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 29, 466, 487
MvaI CCWGG 3 cut(s) 29, 466, 487
MvnI CGCG 1 cut(s) 114
NdeII GATC 3 cut(s) 75, 316, 444
NlaIII CATG 2 cut(s) 88, 277
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 158
PflMI CCANNNNNTGG 2 cut(s) 34, 129
PfoI TCCNGGA 1 cut(s) 464
Ppu21I YACGTR 1 cut(s) 504
PscI ACATGT 1 cut(s) 273
Psp6I CCWGG 3 cut(s) 27, 464, 485
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 3 cut(s) 27, 464, 485
PspPI GGNCC 1 cut(s) 519
PsuI RGATCY 1 cut(s) 75
RsaI GTAC 6 cut(s) 26, 278, 287, 326, 421, 506
RsaNI GTAC 6 cut(s) 25, 277, 286, 325, 420, 505
RseI CAYNNNNRTG 2 cut(s) 102, 332
SapI GCTCTTC 1 cut(s) 158
Sau3AI GATC 3 cut(s) 75, 316, 444
Sau96I GGNCC 1 cut(s) 519
ScrFI CCNGG 3 cut(s) 29, 466, 487
SduI GDGCHC 1 cut(s) 46
SexAI ACCWGGT 1 cut(s) 27
SfaNI GCATC 3 cut(s) 46, 375, 521
SmiMI CAYNNNNRTG 2 cut(s) 102, 332
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 428, 436
SsiI CCGC 1 cut(s) 82
StyD4I CCNGG 3 cut(s) 27, 464, 485
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 217, 290
TaiI ACGT 1 cut(s) 506
TasI AATT 2 cut(s) 428, 436
TatI WGTACW 2 cut(s) 276, 324
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 2 cut(s) 34, 129
XceI RCATGY 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.