Rh2BG336700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000124
Physical Location & Seq
Reverse (-)
44468608 .. 44469186
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG336700.1

Sequence Viewer

Length: 579 bp
ATGGTCAAAAATATCGACACGGAAGCATGCAATATCAGGCTGAAGGGTAGGCTGCTGTTTTTAGACGCGGACAAATTTACTCGTGTTATGGGCATTCACAACGGGGGGCATGCCATTGAACTCGGGGGTGACATTAGTCATGCTGAATATGGAAATGTTGTAACTCCGATGCTTGGCCCGGCTGGCAATATTGCAGTGGACAATCTGAAGTTCATTGTTCGTGACAGGAAAATTGTTGACGACTGTTTCATTATAGCTTATGTAATGTTGGCTCTGACCCTAGTAATATGTCCGGGAACAAGTAATGACGTACAAAGTGGGTTGTTGTTGCCATTACTAGATACGCGCAGTATAGGAGCGAAGAATTGGGCAACATTTGCAGTGGACTACTTGATGGAGGGAATAAGAAAGCATCGTGAAGAAGGATCTCCGGTTGTAGAGGGATGTGCATTATATTTGCAGCTGGTATATTGTGACAAAGTTGGTGAGAAGTTACTGCCAAAGGAGCGGCTAGTGGCACCTGTGATGGATTGGAGCCTTGGGGAGATAAATGTGTTGCTAAGTAGGTTAGTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

192

Amino Acids

21.08

Weight (kDa)

5.8

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AccBSI CCGCTC 1 cut(s) 508
AccII CGCG 2 cut(s) 68, 346
AciI CCGC 2 cut(s) 68, 508
AclWI GGATC 1 cut(s) 433
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 2 cut(s) 62, 227
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 257, 463
AluI AGCT 2 cut(s) 257, 463
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 52, 460
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 2 cut(s) 179, 294
AsuHPI GGTGA 2 cut(s) 140, 497
AvaI CYCGRG 1 cut(s) 122
BanI GGYRCC 1 cut(s) 517
BauI CACGAG 1 cut(s) 81
BbvI GCAGC 2 cut(s) 39, 472
BccI CCATC 2 cut(s) 388, 520
BcnI CCSGG 2 cut(s) 179, 294
BfaI CTAG 3 cut(s) 281, 338, 512
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 3 cut(s) 53, 461, 509
BlsI GCNGC 3 cut(s) 54, 462, 510
Bme1390I CCNGG 2 cut(s) 179, 294
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 519, 536
BmrFI CCNGG 2 cut(s) 179, 294
BmsI GCATC 2 cut(s) 159, 421
BoxI GACNNNNGTC 1 cut(s) 135
BpuMI CCSGG 2 cut(s) 179, 294
BsaJI CCNNGG 1 cut(s) 538
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 538
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 39, 472
Bsh1236I CGCG 2 cut(s) 68, 346
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 179, 293, 431
BslI CCNNNNNNNGG 1 cut(s) 173
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 1 cut(s) 425
BspACI CCGC 2 cut(s) 68, 508
BspANI GGCC 1 cut(s) 177
BspFNI CGCG 2 cut(s) 68, 346
BspLI GGNNCC 2 cut(s) 519, 536
BspPI GGATC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 538
BssMI GATC 1 cut(s) 425
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 538
Bst2BI CACGAG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 28, 111, 184
BstDEI CTNAG 1 cut(s) 560
BstF5I GGATG 1 cut(s) 449
BstFNI CGCG 2 cut(s) 68, 346
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 1 cut(s) 428
BstMBI GATC 1 cut(s) 425
BstMWI GCNNNNNNNGC 3 cut(s) 183, 377, 505
BstNSI RCATGY 2 cut(s) 30, 113
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 177, 292
BstUI CGCG 2 cut(s) 68, 346
BstV1I GCAGC 2 cut(s) 39, 472
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 2 cut(s) 201, 387
BtsIMutI CAGTG 2 cut(s) 201, 387
Cac8I GCNNGC 3 cut(s) 28, 111, 184
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 311
CviAII CATG 3 cut(s) 27, 110, 140
CviJI RGCY 9 cut(s) 40, 52, 177, 182, 257, 272, 463, 511, 537
CviKI_1 RGCY 9 cut(s) 40, 52, 177, 182, 257, 272, 463, 511, 537
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 1 cut(s) 560
DpnI GATC 1 cut(s) 427
DpnII GATC 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 538
Eco57I CTGAAG 2 cut(s) 62, 227
Eco88I CYCGRG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 538
FaeI CATG 3 cut(s) 30, 113, 143
FatI CATG 3 cut(s) 26, 109, 139
Fnu4HI GCNGC 3 cut(s) 53, 461, 509
FokI GGATG 1 cut(s) 456
Fsp4HI GCNGC 3 cut(s) 53, 461, 509
FspBI CTAG 3 cut(s) 281, 338, 512
GlaI GCGC 1 cut(s) 347
GluI GCNGC 3 cut(s) 53, 461, 509
HaeIII GGCC 1 cut(s) 177
HapII CCGG 3 cut(s) 179, 293, 431
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 348
Hin1II CATG 3 cut(s) 30, 113, 143
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaII CCGG 3 cut(s) 179, 293, 431
HphI GGTGA 2 cut(s) 140, 497
Hpy166II GTNNAC 3 cut(s) 199, 238, 385
Hpy188I TCNGA 3 cut(s) 168, 207, 276
Hpy188III TCNNGA 2 cut(s) 221, 416
Hpy8I GTNNAC 3 cut(s) 199, 238, 385
HpyAV CCTTC 2 cut(s) 37, 416
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 5 cut(s) 30, 194, 380, 449, 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 377, 505
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 3 cut(s) 30, 113, 143
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 1 cut(s) 425
LmnI GCTCC 3 cut(s) 356, 505, 534
LpnPI CCDG 8 cut(s) 22, 168, 192, 211, 306, 444, 449, 534
Lsp1109I GCAGC 2 cut(s) 39, 472
LweI GCATC 2 cut(s) 159, 421
MaeI CTAG 3 cut(s) 281, 338, 512
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 5 cut(s) 128, 160, 221, 473, 492
MalI GATC 1 cut(s) 427
MbiI CCGCTC 1 cut(s) 508
MboI GATC 1 cut(s) 425
MboII GAAGA 2 cut(s) 373, 431
MflI RGATCY 1 cut(s) 425
MluCI AATT 3 cut(s) 74, 231, 364
MnlI CCTC 2 cut(s) 391, 433
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 3 cut(s) 179, 293, 431
MspR9I CCNGG 2 cut(s) 179, 294
Mva1269I GAATGC 1 cut(s) 93
MvnI CGCG 2 cut(s) 68, 346
MwoI GCNNNNNNNGC 3 cut(s) 183, 377, 505
NciI CCSGG 2 cut(s) 179, 294
NdeII GATC 1 cut(s) 425
NlaIII CATG 3 cut(s) 30, 113, 143
NlaIV GGNNCC 2 cut(s) 519, 536
NmuCI GTSAC 3 cut(s) 128, 221, 473
NspI RCATGY 2 cut(s) 30, 113
PaeI GCATGC 2 cut(s) 30, 113
PctI GAATGC 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 3 cut(s) 54, 462, 510
PshAI GACNNNNGTC 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 519, 536
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SatI GCNGC 3 cut(s) 53, 461, 509
Sau3AI GATC 1 cut(s) 425
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 179, 294
SetI ASST 5 cut(s) 259, 312, 465, 523, 569
SfaNI GCATC 2 cut(s) 159, 421
SphI GCATGC 2 cut(s) 30, 113
Sse9I AATT 3 cut(s) 74, 231, 364
SsiI CCGC 2 cut(s) 68, 508
SspI AATATT 1 cut(s) 190
SspMI CTAG 3 cut(s) 281, 338, 512
StyD4I CCNGG 2 cut(s) 177, 292
StyI CCWWGG 1 cut(s) 538
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 15
TasI AATT 3 cut(s) 74, 231, 364
TauI GCSGC 1 cut(s) 511
TscAI CASTG 2 cut(s) 201, 387
TseFI GTSAC 3 cut(s) 128, 221, 473
TseI GCWGC 2 cut(s) 52, 460
Tsp45I GTSAC 3 cut(s) 128, 221, 473
TspDTI ATGAA 2 cut(s) 202, 238
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 201, 387
XapI RAATTY 1 cut(s) 74
XceI RCATGY 2 cut(s) 30, 113
XspI CTAG 3 cut(s) 281, 338, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.