Rmu_co8513405.1_g000002

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8513405.1
OG0000124
Physical Location & Seq
Reverse (-)
2836 .. 3837
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8513405.1_g000002.1.cds

Sequence Viewer

Length: 696 bp
atgaatggtcaacacagtcgatatctcaatgctcggagggtaaaagattcatgcaatgggtggcgcataccaggagagtctgcggcctccaaaggtttgacggtagaattgacagttgtgagaggaatgcaggttcttatggtgttttctgctgctaatggattgggtatggaaatgcagatatttctgcctgtgcatgagggttcaatgaaggatggccattggattctcattgtggttgacatgatcaaaaaggttgctgaagtatgggatagcggaccggccacggtactgaagacgtccagaatggataacatttcacaactgttgagacacatagaccgggttctgtggtttgataacatgacgcaacctggaaggatgataaaggtagaagattttacaattgtggaggcaacaaatgttccaaagcaaggaaactcatttgactgcggggtctacgtcatacaaaacatgcagcattatcgcacagattgggcaaaagagtacgactcagacacgcagagatcggccatattgctggattgtttaacaggccctaataacgagttggatgcaaatttacgaaggagtatcataaataataaaagtgggggtgagaatgaagcgacgacacctgaaggttcccagaagaagcgacaacatcaattgagggaagaatgggaagacatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

231

Amino Acids

26.21

Weight (kDa)

6.09

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AatII GACGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 459
AciI CCGC 3 cut(s) 83, 276, 453
AcoI YGGCCR 3 cut(s) 217, 282, 531
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 3 cut(s) 282, 314, 660
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 2 cut(s) 291, 509
AfiI CCNNNNNNNGG 1 cut(s) 434
AgsI TTSAA 1 cut(s) 207
AjnI CCWGG 2 cut(s) 70, 373
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
Alw26I GTCTC 1 cut(s) 325
AoxI GGCC 5 cut(s) 84, 217, 282, 531, 556
ApeKI GCWGC 2 cut(s) 152, 478
ApoI RAATTY 1 cut(s) 580
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 278, 557
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 629
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 139, 490
BccI CCATC 1 cut(s) 209
BcgI CGANNNNNNTGC 4 cut(s) 467, 501, 557, 591
BciT130I CCWGG 2 cut(s) 72, 375
BclI TGATCA 1 cut(s) 246
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 325
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 3 cut(s) 84, 153, 479
BlsI GCNGC 3 cut(s) 85, 154, 480
Bme1390I CCNGG 3 cut(s) 72, 344, 375
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 278, 557
BmiI GGNNCC 1 cut(s) 646
BmrFI CCNGG 3 cut(s) 72, 344, 375
BmsI GCATC 1 cut(s) 565
BpiI GAAGAC 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpuMI CCSGG 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse118I RCCGGY 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 72, 375
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 3 cut(s) 220, 387, 580
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 528
BseXI GCAGC 2 cut(s) 139, 490
BshFI GGCC 5 cut(s) 86, 219, 284, 533, 558
BsiSI CCGG 2 cut(s) 281, 343
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 5 cut(s) 86, 219, 284, 533, 558
Bsp143I GATC 2 cut(s) 246, 527
BspACI CCGC 3 cut(s) 83, 276, 453
BspANI GGCC 5 cut(s) 86, 219, 284, 533, 558
BspCNI CTCAG 1 cut(s) 527
BspLI GGNNCC 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 246, 527
BssNI GRCGYC 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 72, 375
Bst4CI ACNGT 5 cut(s) 17, 103, 115, 289, 327
BstACI GRCGYC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 514
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 220, 387, 580
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 249, 530
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 246, 527
BstNI CCWGG 2 cut(s) 72, 375
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 3 cut(s) 70, 342, 373
BstV1I GCAGC 2 cut(s) 139, 490
BstV2I GAAGAC 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 541
BsuRI GGCC 5 cut(s) 86, 219, 284, 533, 558
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 3 cut(s) 220, 387, 580
BveI ACCTGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 278, 557
CpoI CGGWCCG 1 cut(s) 278
CseI GACGC 1 cut(s) 376
Csp6I GTAC 2 cut(s) 290, 508
CspI CGGWCCG 1 cut(s) 278
CviAII CATG 5 cut(s) 51, 197, 244, 364, 475
CviJI RGCY 5 cut(s) 86, 219, 284, 533, 558
CviKI_1 RGCY 5 cut(s) 86, 219, 284, 533, 558
CviQI GTAC 2 cut(s) 290, 508
DdeI CTNAG 1 cut(s) 514
DpnI GATC 2 cut(s) 248, 529
DpnII GATC 2 cut(s) 246, 527
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 3 cut(s) 217, 282, 531
Eco32I GATATC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 3 cut(s) 282, 314, 660
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 70, 373
EcoRV GATATC 1 cut(s) 23
FaeI CATG 5 cut(s) 54, 200, 247, 367, 478
FatI CATG 5 cut(s) 50, 196, 243, 363, 474
FauI CCCGC 1 cut(s) 446
FbaI TGATCA 1 cut(s) 246
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 3 cut(s) 84, 153, 479
FokI GGATG 3 cut(s) 227, 394, 587
Fsp4HI GCNGC 3 cut(s) 84, 153, 479
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 84, 153, 479
HaeIII GGCC 5 cut(s) 86, 219, 284, 533, 558
HapII CCGG 2 cut(s) 281, 343
HgaI GACGC 1 cut(s) 376
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 5 cut(s) 54, 200, 247, 367, 478
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 2 cut(s) 11, 241
HindII GTYRAC 2 cut(s) 11, 241
HinfI GANTC 4 cut(s) 47, 77, 226, 512
HpaII CCGG 2 cut(s) 281, 343
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 3 cut(s) 11, 241, 460
Hpy188I TCNGA 2 cut(s) 36, 517
Hpy188III TCNNGA 1 cut(s) 303
Hpy8I GTNNAC 3 cut(s) 11, 241, 460
Hpy99I CGWCG 1 cut(s) 634
HpyAV CCTTC 4 cut(s) 205, 372, 582, 635
HpyCH4III ACNGT 5 cut(s) 17, 103, 115, 289, 327
HpyCH4IV ACGT 2 cut(s) 299, 462
HpyCH4V TGCA 6 cut(s) 54, 130, 178, 196, 478, 578
HpyF3I CTNAG 1 cut(s) 514
HpySE526I ACGT 2 cut(s) 299, 462
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 5 cut(s) 54, 200, 247, 367, 478
HspAI GCGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 2 cut(s) 246, 527
Lsp1109I GCAGC 2 cut(s) 139, 490
LweI GCATC 1 cut(s) 565
MaeII ACGT 2 cut(s) 299, 462
MalI GATC 2 cut(s) 248, 529
MboI GATC 2 cut(s) 246, 527
MboII GAAGA 4 cut(s) 307, 407, 664, 689
MfeI CAATTG 2 cut(s) 405, 668
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 4 cut(s) 107, 405, 580, 668
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 2 cut(s) 86, 506
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 6 cut(s) 30, 97, 116, 193, 406, 666
Mox20I TGGCCA 1 cut(s) 219
MscI TGGCCA 1 cut(s) 219
MseI TTAA 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 219
MspI CCGG 2 cut(s) 281, 343
MspR9I CCNGG 3 cut(s) 72, 344, 375
MunI CAATTG 2 cut(s) 405, 668
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 2 cut(s) 72, 375
NciI CCSGG 1 cut(s) 344
NdeII GATC 2 cut(s) 246, 527
NlaIII CATG 5 cut(s) 54, 200, 247, 367, 478
NlaIV GGNNCC 1 cut(s) 646
NspI RCATGY 1 cut(s) 478
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 47, 226
PkrI GCNGC 3 cut(s) 85, 154, 480
PleI GAGTC 2 cut(s) 85, 506
PpsI GAGTC 2 cut(s) 85, 506
Psp6I CCWGG 2 cut(s) 70, 373
PspGI CCWGG 2 cut(s) 70, 373
PspN4I GGNNCC 1 cut(s) 646
PspPI GGNCC 2 cut(s) 278, 557
RsaI GTAC 2 cut(s) 291, 509
RsaNI GTAC 2 cut(s) 290, 508
Rsr2I CGGWCCG 1 cut(s) 278
RsrII CGGWCCG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 3 cut(s) 84, 153, 479
Sau3AI GATC 2 cut(s) 246, 527
Sau96I GGNCC 2 cut(s) 278, 557
SchI GAGTC 2 cut(s) 86, 506
ScrFI CCNGG 3 cut(s) 72, 344, 375
SetI ASST 9 cut(s) 97, 135, 258, 302, 376, 393, 465, 640, 646
SfaNI GCATC 1 cut(s) 565
SinI GGWCC 1 cut(s) 278
Sse9I AATT 4 cut(s) 107, 405, 580, 668
SsiI CCGC 3 cut(s) 83, 276, 453
StyD4I CCNGG 3 cut(s) 70, 342, 373
TaaI ACNGT 5 cut(s) 17, 103, 115, 289, 327
TaiI ACGT 2 cut(s) 302, 465
TaqI TCGA 1 cut(s) 19
TasI AATT 4 cut(s) 107, 405, 580, 668
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 2 cut(s) 47, 226
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TseI GCWGC 2 cut(s) 152, 478
TspDTI ATGAA 4 cut(s) 17, 39, 224, 639
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 580
XceI RCATGY 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 459
ZraI GACGTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.