Rh6DG498800

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000124
Physical Location & Seq
Forward (+)
65575969 .. 65579479
3511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG498800.1

Sequence Viewer

Length: 2382 bp
ATGAAGGCCCGGCGAGGTAATCTATTCGGTTCTCCACCAAATATCACGGGAGCCACTGGAGCAAATGACTCACCGAATACCCCTGATGTGGCTACGACATCAACTGAACTTGTTATGGGGGACTTGGTGACAAATTCCAAACCCTATGAGTTCACATTGACCGTATCTGGACTCTCCGTTGAAAAGGTGGTTGCCATAGCTGAGATGGGCTTTGATGGTCTCTTGCAGATTGGATGCAACACTCTTGTTGGACCTGTCTGGAGGCTGATGGTGCACAGTGTTGACCTCGGTAACCGCAGAGTGTCGATAATGGGCCAGAACTTTGCAGTTACTCCACATGAGTTTGGCCGTGTAATGGGAGTGCAGGATGGAGGCTCTGACTTTGAACTGGGGACTGCCACAGACGTTGCTGAGTATGGCATGATTGTGGAAGACATGTGTGACAAAGAAGGAAGGATCCAGTACTGTCATCTGAAGGAAATAGTACGGGACCGTGAGGAAGCCGACGACAAGTTCAGGATCGCATTTTCCTTGCTTGCACTAGGTTTGGTTCTGTGCCCTACAACAGATGACGCTGTTGACACGTCTCTGATTCTACCCCTTCTGGAAACGGGACGCATTGGGCAGAAGAACTGGGCTTCCTTTTGTCTCCAAAGATTGCTAGACTCTGTGACGGCCCAGAGGGAACATGGGGACGGTGTTGTTGGGGGGTGTGTGCTCTTCCTCCAGGTTCTATACTTCGAGAAGGTCGGCTCCGCTTGTTTTCATATTGATAGGTCTATACTTCCACTTAAGGCCTGGGGGGACTTTGAGGGCAGGGAGTTGATAAACAGGGTTAGGACATATGGTGGCTTTAAGAGTCCAATTGTCATGATGGAGAGGAACAAGCGGGTGAAAATGGCTGCTAAATGCGCCGATGATGATGGTGAGTTTGGACTCGGACTGAGGAAGTCAGTTCATGAGGACATCTTCGACGTCAAGTTGGAGCTCATGGGGGTCAAGGGTGACGTGTGGAGGCTCATGGATGCTTGTGGGAGGATTCAGCCTGATGTCGCCCAACTAGCAAGGAAAGTGGAGATTATAGCACATCAGATAAGCGGTTTGAGGGAGGAATGTGCCGACATGGTGAAGATCCAACTGCTGAGATCGGCAAACAGGAAGGGGGATGACTGCAACGTTCACACAGTCCCTGTGTGGAAACCGCGGAGGAGGGATGGAATGGGGAGTGGAGATTCAGTCCTCCATGCTGACACATTTCAGGAGGAAGAGAGCTTGCAGCGAAAGAAGGCAAATTCAAAGCTATGTGATAATGCTTTTGGTAAGGCAGTCAAGGCTGTATCTGCCAGCTCAAGCAGTCCTGGTGCCGCCCCAACAAGAGAGATGAGAACATATCAGGGCGGGTGTGTGGCTGAATCCAAGGCAGTTGTATCTCCACATGCCAGGGCCATGTTCACATATGCAGTCACCCGCAACGAGGAGGTCAATCATGTGATTAGAACGGGCTGTAATGGAGCAGAGCTCACTAATGCCAAATCTTGGATGCTGCTAGGACCTTACATGCTGATGCACCCTATAGGGAATGACGACATTCTCCTAATCAATTACATTTTCATGGGTGGGAAGAAAGTTACGGTGGAGGAGGGAAGAACTATGGTTGCTTCAACCGGGAATGAGAAGGCACTACTTTACCGTGATGAGGCCTTATGCTTGGGGCCAGCCACAAATGTTTCCAGCTTTGTCATCAACTTTGTCGCAGAATGCTTGAACAAGGATGGGAGTGGGGACTGGTTTTTTCCTACTTACTTCTCGGAAAAGGCCAGTTCGTACAATGCAGGGGAATCGTTTCGGGAATGGGTGGAGCACACAAGGACACTGTGCAACCTTGATAGATTCAACGGTTGCATGAAGAATTGCAAGAGGATGTTTTTGCCGATGCACGAGGACAAGGCCGGGGGACATTGGTTTCTGATGGTGGTTGATCTAGAAAAGAAGGTGGCTGAGGTTTGGGACAGTCTGCCGACTCTGTCATCAACAAGCAGTAGATGGGACCATGCACTGACAACGGCCGGGTCAGATGAGCTTATAGCAAGGGTGCTTCTTCGGTGTCTCAAAGCCCCTGATAATGAGAGGGCCACGGTTACACTAACAGAAGCACACTCCTTTGCTGTTGAGAAGGGATCTGTGGGAGGTTTGAAGGAGGACAAGATAGTGGAGCCAAATGGATGGGAAGGGATTGATCTGTCTGAGTTTGAGGAACTGGATGATGATTTGGGAGTTACTCAAGTTGGTGATCCGAGTACAGCGGCAATTGGTGAGTCAGGCATAGTGAAGAGGAACATGGACCTTAGGGAAGGCTTTCCTAAGGGAATGTTCCGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

793

Amino Acids

87.27

Weight (kDa)

5.47

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 612 - 682 6.1e-07 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 978
AccB1I GGYRCC 1 cut(s) 1361
AccB7I CCANNNNNTGG 1 cut(s) 1536
AccII CGCG 1 cut(s) 1204
AclI AACGTT 1 cut(s) 1176
AclWI GGATC 6 cut(s) 451, 464, 527, 1126, 2185, 2285
AcoI YGGCCR 2 cut(s) 346, 2064
AcsI RAATTY 2 cut(s) 133, 1291
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 975
AfaI GTAC 4 cut(s) 464, 486, 1826, 2299
AfiI CCNNNNNNNGG 5 cut(s) 88, 355, 1474, 1536, 1696
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 3 cut(s) 435, 582, 1008
AgsI TTSAA 7 cut(s) 182, 386, 1296, 1662, 1765, 1894, 2194
AjiI CACGTC 2 cut(s) 585, 1009
AjnI CCWGG 4 cut(s) 726, 797, 1357, 1439
AloI GAACNNNNNNTCC 2 cut(s) 623, 655
AluBI AGCT 8 cut(s) 200, 988, 1272, 1300, 1347, 1519, 1734, 2080
AluI AGCT 8 cut(s) 200, 988, 1272, 1300, 1347, 1519, 1734, 2080
Alw21I GWGCWC 5 cut(s) 276, 720, 990, 1521, 1863
Alw26I GTCTC 4 cut(s) 224, 591, 653, 2111
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 6 cut(s) 451, 464, 527, 1126, 2185, 2285
AlwNI CAGNNNCTG 1 cut(s) 1190
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 3 cut(s) 902, 1276, 1543
ApoI RAATTY 2 cut(s) 133, 1291
Asp700I GAANNNNTTC 2 cut(s) 1842, 2355
AspLEI GCGC 1 cut(s) 914
AsuC2I CCSGG 4 cut(s) 10, 1666, 1951, 2068
AsuHPI GGTGA 9 cut(s) 63, 139, 904, 938, 1016, 1138, 1456, 2300, 2324
AvaII GGWCC 5 cut(s) 251, 490, 1550, 2047, 2341
AxyI CCTNAGG 2 cut(s) 2345, 2361
BaeGI GKGCMC 2 cut(s) 276, 560
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 1361
BanII GRGCYC 2 cut(s) 990, 1521
BauI CACGAG 1 cut(s) 1937
BbsI GAAGAC 1 cut(s) 438
Bbv12I GWGCWC 5 cut(s) 276, 720, 990, 1521, 1863
BbvCI CCTCAGC 1 cut(s) 1998
BbvI GCAGC 3 cut(s) 889, 1288, 1530
BceAI ACGGC 3 cut(s) 333, 690, 2079
BcgI CGANNNNNNTGC 2 cut(s) 1821, 1855
BciT130I CCWGG 4 cut(s) 728, 799, 1359, 1441
BcnI CCSGG 4 cut(s) 10, 1666, 1951, 2068
BcoDI GTCTC 4 cut(s) 224, 591, 653, 2111
BfaI CTAG 5 cut(s) 542, 662, 1061, 1547, 1982
BfmI CTRYAG 1 cut(s) 1572
BfrI CTTAAG 1 cut(s) 791
BisI GCNGC 5 cut(s) 903, 1277, 1365, 1544, 2304
BlsI GCNGC 5 cut(s) 904, 1278, 1366, 1545, 2305
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 8 cut(s) 10, 728, 799, 1359, 1441, 1666, 1951, 2068
Bme18I GGWCC 5 cut(s) 251, 490, 1550, 2047, 2341
BmgBI CACGTC 2 cut(s) 585, 1009
BmiI GGNNCC 8 cut(s) 52, 458, 491, 754, 1363, 1713, 2048, 2214
BmrFI CCNGG 8 cut(s) 10, 728, 799, 1359, 1441, 1666, 1951, 2068
BmrI ACTGGG 2 cut(s) 398, 643
BmsI GCATC 5 cut(s) 224, 1015, 1530, 1554, 1923
BmuI ACTGGG 2 cut(s) 398, 643
BpiI GAAGAC 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 1503, 1535
BpmI CTGGAG 3 cut(s) 78, 280, 710
Bpu10I CCTNAGC 1 cut(s) 1998
BpuEI CTTGAG 2 cut(s) 1333, 2265
BpuMI CCSGG 4 cut(s) 10, 1666, 1951, 2068
BsaHI GRCGYC 1 cut(s) 975
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 7 cut(s) 286, 798, 1202, 1416, 1440, 1950, 2133
BsaXI ACNNNNNCTCC 2 cut(s) 1221, 1251
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 355, 1474, 1536, 1696
Bse1I ACTGG 7 cut(s) 61, 393, 460, 638, 1790, 1818, 2262
Bse21I CCTNAGG 2 cut(s) 2345, 2361
BseBI CCWGG 4 cut(s) 728, 799, 1359, 1441
BseDI CCNNGG 7 cut(s) 286, 798, 1202, 1416, 1440, 1950, 2133
BseLI CCNNNNNNNGG 5 cut(s) 88, 355, 1474, 1536, 1696
BseMII CTCAG 6 cut(s) 192, 402, 935, 1133, 1989, 2235
BseNI ACTGG 7 cut(s) 61, 393, 460, 638, 1790, 1818, 2262
BseRI GAGGAG 3 cut(s) 1222, 1490, 1652
BseSI GKGCMC 2 cut(s) 276, 560
BseX3I CGGCCG 1 cut(s) 2064
BseXI GCAGC 3 cut(s) 889, 1288, 1530
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 1204
Bsh1285I CGRYCG 1 cut(s) 2067
BshNI GGYRCC 1 cut(s) 1361
BsiEI CGRYCG 1 cut(s) 2067
BsiHKAI GWGCWC 5 cut(s) 276, 720, 990, 1521, 1863
BsiSI CCGG 4 cut(s) 10, 1665, 1950, 2067
BslI CCNNNNNNNGG 5 cut(s) 88, 355, 1474, 1536, 1696
BsmAI GTCTC 4 cut(s) 224, 591, 653, 2111
BsmBI CGTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 1763
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 6 cut(s) 276, 560, 720, 990, 1521, 1863
Bsp143I GATC 8 cut(s) 456, 519, 1131, 1145, 1978, 2177, 2236, 2290
BspCNI CTCAG 6 cut(s) 193, 403, 936, 1134, 1990, 2236
BspFNI CGCG 1 cut(s) 1204
BspHI TCATGA 2 cut(s) 870, 958
BspLI GGNNCC 8 cut(s) 52, 458, 491, 754, 1363, 1713, 2048, 2214
BspPI GGATC 6 cut(s) 451, 464, 527, 1126, 2185, 2285
BspQI GCTCTTC 1 cut(s) 725
BspT107I GGYRCC 1 cut(s) 1361
BspTI CTTAAG 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 224
BsrI ACTGG 7 cut(s) 61, 393, 460, 638, 1790, 1818, 2262
BssECI CCNNGG 7 cut(s) 286, 798, 1202, 1416, 1440, 1950, 2133
BssMI GATC 8 cut(s) 456, 519, 1131, 1145, 1978, 2177, 2236, 2290
BssNI GRCGYC 1 cut(s) 975
BssSI CACGAG 1 cut(s) 1937
BssT1I CCWWGG 1 cut(s) 1416
Bst2BI CACGAG 1 cut(s) 1937
Bst2UI CCWGG 4 cut(s) 728, 799, 1359, 1441
Bst6I CTCTTC 3 cut(s) 725, 1260, 2324
BstACI GRCGYC 1 cut(s) 975
BstAFI CTTAAG 1 cut(s) 791
BstC8I GCNNGC 4 cut(s) 537, 1274, 1345, 1716
BstDEI CTNAG 8 cut(s) 201, 411, 944, 1142, 1998, 2244, 2345, 2361
BstDSI CCRYGG 2 cut(s) 1202, 2133
BstEII GGTNACC 1 cut(s) 290
BstFNI CGCG 1 cut(s) 1204
BstHHI GCGC 1 cut(s) 914
BstKTI GATC 8 cut(s) 459, 522, 1134, 1148, 1981, 2180, 2239, 2293
BstMAI GTCTC 4 cut(s) 224, 591, 653, 2111
BstMBI GATC 8 cut(s) 456, 519, 1131, 1145, 1978, 2177, 2236, 2290
BstMCI CGRYCG 1 cut(s) 2067
BstMWI GCNNNNNNNGC 6 cut(s) 59, 271, 911, 1061, 1331, 1340
BstNI CCWGG 4 cut(s) 728, 799, 1359, 1441
BstNSI RCATGY 3 cut(s) 439, 1439, 1561
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 8 cut(s) 8, 726, 797, 1357, 1439, 1664, 1949, 2066
BstSFI CTRYAG 1 cut(s) 1572
BstSLI GKGCMC 2 cut(s) 276, 560
BstUI CGCG 1 cut(s) 1204
BstV1I GCAGC 3 cut(s) 889, 1288, 1530
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 3 cut(s) 456, 1131, 2177
BstXI CCANNNNNNTGG 1 cut(s) 2223
BstYI RGATCY 3 cut(s) 456, 1131, 2177
BstZI CGGCCG 1 cut(s) 2064
Bsu36I CCTNAGG 2 cut(s) 2345, 2361
BtgI CCRYGG 2 cut(s) 1202, 2133
BtrI CACGTC 2 cut(s) 585, 1009
BtsIMutI CAGTG 4 cut(s) 54, 283, 1871, 2054
Cac8I GCNNGC 4 cut(s) 537, 1274, 1345, 1716
CaiI CAGNNNCTG 1 cut(s) 1190
CciI TCATGA 2 cut(s) 870, 958
CfoI GCGC 1 cut(s) 914
Cfr42I CCGCGG 1 cut(s) 1205
CseI GACGC 2 cut(s) 581, 624
Csp6I GTAC 4 cut(s) 463, 485, 1825, 2298
CspCI CAANNNNNGTGG 4 cut(s) 388, 423, 1053, 1088
CviQI GTAC 4 cut(s) 463, 485, 1825, 2298
DdeI CTNAG 8 cut(s) 201, 411, 944, 1142, 1998, 2244, 2345, 2361
DpnI GATC 8 cut(s) 458, 521, 1133, 1147, 1980, 2179, 2238, 2292
DpnII GATC 8 cut(s) 456, 519, 1131, 1145, 1978, 2177, 2236, 2290
EaeI YGGCCR 2 cut(s) 346, 2064
EagI CGGCCG 1 cut(s) 2064
Eam1104I CTCTTC 3 cut(s) 725, 1260, 2324
EarI CTCTTC 3 cut(s) 725, 1260, 2324
Ecl136II GAGCTC 2 cut(s) 988, 1519
EclXI CGGCCG 1 cut(s) 2064
Eco130I CCWWGG 1 cut(s) 1416
Eco147I AGGCCT 2 cut(s) 797, 1700
Eco24I GRGCYC 2 cut(s) 990, 1521
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 5 cut(s) 251, 490, 1550, 2047, 2341
Eco52I CGGCCG 1 cut(s) 2064
Eco53kI GAGCTC 2 cut(s) 988, 1519
Eco57I CTGAAG 1 cut(s) 494
Eco81I CCTNAGG 2 cut(s) 2345, 2361
Eco91I GGTNACC 1 cut(s) 290
EcoICRI GAGCTC 2 cut(s) 988, 1519
EcoO109I RGGNCCY 1 cut(s) 1550
EcoO65I GGTNACC 1 cut(s) 290
EcoRII CCWGG 4 cut(s) 726, 797, 1357, 1439
EcoT14I CCWWGG 1 cut(s) 1416
EcoT38I GRGCYC 2 cut(s) 990, 1521
ErhI CCWWGG 1 cut(s) 1416
Esp3I CGTCTC 1 cut(s) 591
FauI CCCGC 3 cut(s) 882, 1391, 1475
FauNDI CATATG 2 cut(s) 844, 1456
Fnu4HI GCNGC 5 cut(s) 903, 1277, 1365, 1544, 2304
FriOI GRGCYC 2 cut(s) 990, 1521
Fsp4HI GCNGC 5 cut(s) 903, 1277, 1365, 1544, 2304
FspBI CTAG 5 cut(s) 542, 662, 1061, 1547, 1982
GlaI GCGC 1 cut(s) 913
GluI GCNGC 5 cut(s) 903, 1277, 1365, 1544, 2304
GsuI CTGGAG 3 cut(s) 78, 280, 710
HapII CCGG 4 cut(s) 10, 1665, 1950, 2067
HgaI GACGC 2 cut(s) 581, 624
HhaI GCGC 1 cut(s) 914
Hin1I GRCGYC 1 cut(s) 975
Hin6I GCGC 1 cut(s) 912
HinP1I GCGC 1 cut(s) 912
HincII GTYRAC 2 cut(s) 283, 580
HindII GTYRAC 2 cut(s) 283, 580
HpaII CCGG 4 cut(s) 10, 1665, 1950, 2067
HphI GGTGA 9 cut(s) 63, 139, 904, 938, 1016, 1138, 1456, 2300, 2324
Hpy166II GTNNAC 6 cut(s) 153, 274, 283, 580, 1180, 1452
Hpy8I GTNNAC 6 cut(s) 153, 274, 283, 580, 1180, 1452
Hpy99I CGWCG 2 cut(s) 509, 977
HpyCH4IV ACGT 5 cut(s) 405, 584, 975, 1008, 1176
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 271, 911, 1061, 1331, 1340
HpyF3I CTNAG 8 cut(s) 201, 411, 944, 1142, 1998, 2244, 2345, 2361
HpySE526I ACGT 5 cut(s) 405, 584, 975, 1008, 1176
Hsp92I GRCGYC 1 cut(s) 975
HspAI GCGC 1 cut(s) 912
KspI CCGCGG 1 cut(s) 1205
Kzo9I GATC 8 cut(s) 456, 519, 1131, 1145, 1978, 2177, 2236, 2290
LguI GCTCTTC 1 cut(s) 725
LmnI GCTCC 7 cut(s) 50, 59, 758, 985, 1511, 1858, 2212
Lsp1109I GCAGC 3 cut(s) 889, 1288, 1530
LweI GCATC 5 cut(s) 224, 1015, 1530, 1554, 1923
MaeI CTAG 5 cut(s) 542, 662, 1061, 1547, 1982
MaeII ACGT 5 cut(s) 405, 584, 975, 1008, 1176
MalI GATC 8 cut(s) 458, 521, 1133, 1147, 1980, 2179, 2238, 2292
MboI GATC 8 cut(s) 456, 519, 1131, 1145, 1978, 2177, 2236, 2290
MfeI CAATTG 2 cut(s) 864, 2307
MflI RGATCY 3 cut(s) 456, 1131, 2177
MhlI GDGCHC 6 cut(s) 276, 560, 720, 990, 1521, 1863
MluCI AATT 6 cut(s) 133, 864, 1291, 1600, 1909, 2307
MlyI GAGTC 7 cut(s) 62, 165, 659, 868, 930, 2014, 2324
MmeI TCCRAC 3 cut(s) 229, 963, 1159
MroXI GAANNNNTTC 2 cut(s) 1842, 2355
MseI TTAA 2 cut(s) 792, 855
MslI CAYNNNNRTG 3 cut(s) 425, 1562, 1610
MspA1I CMGCKG 2 cut(s) 1204, 2303
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 4 cut(s) 10, 1665, 1950, 2067
MspR9I CCNGG 8 cut(s) 10, 728, 799, 1359, 1441, 1666, 1951, 2068
MunI CAATTG 2 cut(s) 864, 2307
Mva1269I GAATGC 1 cut(s) 1763
MvaI CCWGG 4 cut(s) 728, 799, 1359, 1441
MvnI CGCG 1 cut(s) 1204
MwoI GCNNNNNNNGC 6 cut(s) 59, 271, 911, 1061, 1331, 1340
NciI CCSGG 4 cut(s) 10, 1666, 1951, 2068
NdeI CATATG 2 cut(s) 844, 1456
NdeII GATC 8 cut(s) 456, 519, 1131, 1145, 1978, 2177, 2236, 2290
NlaIV GGNNCC 8 cut(s) 52, 458, 491, 754, 1363, 1713, 2048, 2214
NmuCI GTSAC 5 cut(s) 127, 440, 670, 1004, 1462
NspI RCATGY 3 cut(s) 439, 1439, 1561
PagI TCATGA 2 cut(s) 870, 958
PceI AGGCCT 2 cut(s) 797, 1700
PciI ACATGT 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 725
PctI GAATGC 1 cut(s) 1763
PdmI GAANNNNTTC 2 cut(s) 1842, 2355
PfeI GAWTC 6 cut(s) 592, 1039, 1232, 1412, 1838, 1890
PflFI GACNNNGTC 1 cut(s) 2023
PflMI CCANNNNNTGG 1 cut(s) 1536
PkrI GCNGC 5 cut(s) 904, 1278, 1366, 1545, 2305
PleI GAGTC 7 cut(s) 62, 165, 659, 867, 930, 2014, 2323
PpsI GAGTC 7 cut(s) 62, 165, 659, 867, 930, 2014, 2323
PpuMI RGGWCCY 1 cut(s) 1550
PscI ACATGT 1 cut(s) 435
Psp124BI GAGCTC 2 cut(s) 990, 1521
Psp1406I AACGTT 1 cut(s) 1176
Psp5II RGGWCCY 1 cut(s) 1550
Psp6I CCWGG 4 cut(s) 726, 797, 1357, 1439
PspEI GGTNACC 1 cut(s) 290
PspGI CCWGG 4 cut(s) 726, 797, 1357, 1439
PspN4I GGNNCC 8 cut(s) 52, 458, 491, 754, 1363, 1713, 2048, 2214
PspPPI RGGWCCY 1 cut(s) 1550
PstNI CAGNNNCTG 1 cut(s) 1190
PsuI RGATCY 3 cut(s) 456, 1131, 2177
PsyI GACNNNGTC 1 cut(s) 2023
RsaI GTAC 4 cut(s) 464, 486, 1826, 2299
RsaNI GTAC 4 cut(s) 463, 485, 1825, 2298
RseI CAYNNNNRTG 3 cut(s) 425, 1562, 1610
SacI GAGCTC 2 cut(s) 990, 1521
SacII CCGCGG 1 cut(s) 1205
SapI GCTCTTC 1 cut(s) 725
SaqAI TTAA 2 cut(s) 792, 855
SatI GCNGC 5 cut(s) 903, 1277, 1365, 1544, 2304
Sau3AI GATC 8 cut(s) 456, 519, 1131, 1145, 1978, 2177, 2236, 2290
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 7 cut(s) 62, 165, 659, 868, 930, 2014, 2324
ScrFI CCNGG 8 cut(s) 10, 728, 799, 1359, 1441, 1666, 1951, 2068
SduI GDGCHC 6 cut(s) 276, 560, 720, 990, 1521, 1863
SfaNI GCATC 5 cut(s) 224, 1015, 1530, 1554, 1923
SfcI CTRYAG 1 cut(s) 1572
Sfr303I CCGCGG 1 cut(s) 1205
SgrBI CCGCGG 1 cut(s) 1205
SinI GGWCC 5 cut(s) 251, 490, 1550, 2047, 2341
SmiMI CAYNNNNRTG 3 cut(s) 425, 1562, 1610
SmlI CTYRAG 3 cut(s) 791, 1348, 2280
SmoI CTYRAG 3 cut(s) 791, 1348, 2280
Sse9I AATT 6 cut(s) 133, 864, 1291, 1600, 1909, 2307
SseBI AGGCCT 2 cut(s) 797, 1700
SspMI CTAG 5 cut(s) 542, 662, 1061, 1547, 1982
SstI GAGCTC 2 cut(s) 990, 1521
StuI AGGCCT 2 cut(s) 797, 1700
StyD4I CCNGG 8 cut(s) 8, 726, 797, 1357, 1439, 1664, 1949, 2066
StyI CCWWGG 1 cut(s) 1416
TaiI ACGT 5 cut(s) 408, 587, 978, 1011, 1179
TaqI TCGA 3 cut(s) 305, 741, 972
TasI AATT 6 cut(s) 133, 864, 1291, 1600, 1909, 2307
TatI WGTACW 2 cut(s) 462, 2297
TauI GCSGC 2 cut(s) 1367, 2306
TfiI GAWTC 6 cut(s) 592, 1039, 1232, 1412, 1838, 1890
Tru1I TTAA 2 cut(s) 792, 855
Tru9I TTAA 2 cut(s) 792, 855
TscAI CASTG 4 cut(s) 61, 283, 1878, 2061
TseFI GTSAC 5 cut(s) 127, 440, 670, 1004, 1462
TseI GCWGC 3 cut(s) 902, 1276, 1543
Tsp45I GTSAC 5 cut(s) 127, 440, 670, 1004, 1462
TspDTI ATGAA 5 cut(s) 17, 755, 947, 1600, 1919
TspGWI ACGGA 2 cut(s) 166, 2363
TspRI CASTG 4 cut(s) 61, 283, 1878, 2061
Tth111I GACNNNGTC 1 cut(s) 2023
Van91I CCANNNNNTGG 1 cut(s) 1536
Vha464I CTTAAG 1 cut(s) 791
VneI GTGCAC 1 cut(s) 272
VpaK11BI GGWCC 5 cut(s) 251, 490, 1550, 2047, 2341
XapI RAATTY 2 cut(s) 133, 1291
XbaI TCTAGA 1 cut(s) 1981
XceI RCATGY 3 cut(s) 439, 1439, 1561
XcmI CCANNNNNNNNNTGG 3 cut(s) 202, 686, 795
XmnI GAANNNNTTC 2 cut(s) 1842, 2355
XspI CTAG 5 cut(s) 542, 662, 1061, 1547, 1982
ZraI GACGTC 1 cut(s) 976
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.