Rw6G014940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000124
Physical Location & Seq
Reverse (-)
28103469 .. 28104483
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014940.1

Sequence Viewer

Length: 768 bp
ATGGAACTGACTGGTATTTTGGACTCCTTCATGTCGGACATTTGGGATCGGAAAGTAACTGTGCCTATTGTACGAAGAGGTTCTCTGCGTGACAAGCTAGTGGCAGACGGCGCGCCGGGCATATGTGAGCTCCTTTGGGAAACAATTCCGTCAAGGCGGTGGATGGTTCACATGACAGGAAAGAAAGAGTTGACATTCGGTTCTGGATGGGACCGCTTTCAAACGGATGCAGGGTTGGACGATTCTCTGTGCTGTGTTTTCACGCGCATTGGTCGATTGTGTTTCTCTGTTCAAGTATTCAACATCAAGAAAGGGATTCTGTCAATGAATCTCAGCCAAGCAGGCCTATCTAGAACTCTGCCCGATGTGAAAACAAAGGATGAAGCCTCAATGGAAGAAGAAGTCGCAGTTGGGGCCGATGTGGGGGGGCAGCTATCTGAACCGGATATGGGACCATATGGTGAGCTTCCTCAAAGGGAACGCGTCGACACTGGATGGGCTGGATTCCGCTATGACACTTGTAAGATTCAACAATCTCACGGGGCTTTCCATGCTGACTTTGCTCGTAGCCTATTTGGAGATGATGAGAGACCTGTGATAAAGGTGCAGAAATCAAATGGCCGGGTGTGGCGAATCAAGGTGGTCCCAAGCAACACAACTCATGTTTTGAGTGCGGGCTACACTAAAATGAAGGATGCTCTCGGACTGCCGGTACATTCTACAATCCGACTTCATGTGGTTAATCCAAGACTACTTGTGTTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.48

Weight (kDa)

7.67

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 486
AccII CGCG 3 cut(s) 113, 265, 483
AciI CCGC 4 cut(s) 157, 214, 508, 674
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 619
AfaI GTAC 2 cut(s) 72, 714
AfiI CCNNNNNNNGG 2 cut(s) 423, 449
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 4 cut(s) 221, 293, 301, 530
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 4 cut(s) 97, 130, 433, 466
AluI AGCT 4 cut(s) 97, 130, 433, 466
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 583
AlwI GGATC 1 cut(s) 54
AoxI GGCC 3 cut(s) 343, 414, 619
ApeKI GCWGC 1 cut(s) 430
ArsI GACNNNNNNTTYG 1 cut(s) 33
AscI GGCGCGCC 1 cut(s) 111
Asp700I GAANNNNTTC 2 cut(s) 79, 144
AspLEI GCGC 3 cut(s) 113, 115, 267
AspS9I GGNCC 4 cut(s) 211, 414, 452, 643
AsuC2I CCSGG 2 cut(s) 117, 623
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 3 cut(s) 211, 452, 643
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 442
BccI CCATC 3 cut(s) 157, 201, 489
BceAI ACGGC 1 cut(s) 124
BcnI CCSGG 2 cut(s) 117, 623
BcoDI GTCTC 1 cut(s) 583
BfaI CTAG 2 cut(s) 98, 351
BglI GCCNNNNNGGC 1 cut(s) 342
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 2 cut(s) 117, 623
Bme18I GGWCC 3 cut(s) 211, 452, 643
BmgT120I GGNCC 4 cut(s) 211, 414, 452, 643
BmiI GGNNCC 4 cut(s) 212, 415, 453, 645
BmrFI CCNGG 2 cut(s) 117, 623
BmsI GCATC 2 cut(s) 217, 685
BpuMI CCSGG 2 cut(s) 117, 623
BsaI GGTCTC 1 cut(s) 583
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 2 cut(s) 423, 449
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 2 cut(s) 16, 496
BseGI GGATG 6 cut(s) 168, 212, 232, 385, 500, 700
BseLI CCNNNNNNNGG 2 cut(s) 423, 449
BseMII CTCAG 1 cut(s) 346
BseNI ACTGG 2 cut(s) 16, 496
BsePI GCGCGC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 626
Bsh1236I CGCG 3 cut(s) 113, 265, 483
BshFI GGCC 3 cut(s) 345, 416, 621
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 4 cut(s) 116, 443, 622, 710
BslFI GGGAC 3 cut(s) 224, 465, 629
BslI CCNNNNNNNGG 2 cut(s) 423, 449
BsmAI GTCTC 1 cut(s) 583
BsmFI GGGAC 3 cut(s) 224, 465, 629
BsnI GGCC 3 cut(s) 345, 416, 621
Bso31I GGTCTC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 4 cut(s) 157, 214, 508, 674
BspANI GGCC 3 cut(s) 345, 416, 621
BspCNI CTCAG 1 cut(s) 345
BspFNI CGCG 3 cut(s) 113, 265, 483
BspLI GGNNCC 4 cut(s) 212, 415, 453, 645
BspPI GGATC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 2 cut(s) 16, 496
BssAI RCCGGY 1 cut(s) 709
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 113, 343, 676
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 6 cut(s) 168, 212, 232, 385, 500, 700
BstFNI CGCG 3 cut(s) 113, 265, 483
BstHHI GCGC 3 cut(s) 113, 115, 267
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 7 cut(s) 94, 110, 117, 342, 413, 551, 560
BstSCI CCNGG 2 cut(s) 115, 621
BstUI CGCG 3 cut(s) 113, 265, 483
BstV1I GCAGC 1 cut(s) 442
BsuRI GGCC 3 cut(s) 345, 416, 621
BtsCI GGATG 6 cut(s) 168, 212, 232, 385, 500, 700
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 3 cut(s) 113, 343, 676
CfoI GCGC 3 cut(s) 113, 115, 267
Cfr10I RCCGGY 1 cut(s) 709
Cfr13I GGNCC 4 cut(s) 211, 414, 452, 643
CseI GACGC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 71, 713
CviAII CATG 5 cut(s) 31, 172, 551, 662, 734
CviQI GTAC 2 cut(s) 71, 713
DdeI CTNAG 1 cut(s) 332
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 583
Eco47I GGWCC 3 cut(s) 211, 452, 643
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 5 cut(s) 34, 175, 554, 665, 737
FaqI GGGAC 3 cut(s) 224, 465, 629
FatI CATG 5 cut(s) 30, 171, 550, 661, 733
FauI CCCGC 1 cut(s) 667
FauNDI CATATG 2 cut(s) 122, 457
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 6 cut(s) 175, 219, 239, 392, 507, 707
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 2 cut(s) 98, 351
GlaI GCGC 3 cut(s) 112, 114, 266
GluI GCNGC 1 cut(s) 431
HaeIII GGCC 3 cut(s) 345, 416, 621
HapII CCGG 4 cut(s) 116, 443, 622, 710
HgaI GACGC 1 cut(s) 472
HhaI GCGC 3 cut(s) 113, 115, 267
Hin1II CATG 5 cut(s) 34, 175, 554, 665, 737
Hin6I GCGC 3 cut(s) 111, 113, 265
HinP1I GCGC 3 cut(s) 111, 113, 265
HincII GTYRAC 2 cut(s) 192, 487
HindII GTYRAC 2 cut(s) 192, 487
HinfI GANTC 7 cut(s) 23, 242, 316, 328, 504, 526, 633
HpaII CCGG 4 cut(s) 116, 443, 622, 710
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 3 cut(s) 169, 192, 487
Hpy188I TCNGA 5 cut(s) 37, 51, 439, 704, 728
Hpy188III TCNNGA 3 cut(s) 204, 307, 351
Hpy8I GTNNAC 3 cut(s) 169, 192, 487
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 37, 685
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 230, 607
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 110, 117, 342, 413, 551, 560
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 5 cut(s) 34, 175, 554, 665, 737
HspAI GCGC 3 cut(s) 111, 113, 265
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 135
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 2 cut(s) 217, 685
MaeI CTAG 2 cut(s) 98, 351
MaeIII GTNAC 2 cut(s) 55, 89
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 87, 407, 410
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 1 cut(s) 144
MluI ACGCGT 1 cut(s) 481
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 3 cut(s) 15, 216, 751
MnlI CCTC 3 cut(s) 71, 397, 480
MroXI GAANNNNTTC 2 cut(s) 79, 144
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 686
MspI CCGG 4 cut(s) 116, 443, 622, 710
MspR9I CCNGG 2 cut(s) 117, 623
MvnI CGCG 3 cut(s) 113, 265, 483
MwoI GCNNNNNNNGC 7 cut(s) 94, 110, 117, 342, 413, 551, 560
NciI CCSGG 2 cut(s) 117, 623
NdeI CATATG 2 cut(s) 122, 457
NdeII GATC 1 cut(s) 46
NlaIII CATG 5 cut(s) 34, 175, 554, 665, 737
NlaIV GGNNCC 4 cut(s) 212, 415, 453, 645
NmuCI GTSAC 1 cut(s) 89
PalAI GGCGCGCC 1 cut(s) 111
PauI GCGCGC 1 cut(s) 111
PceI AGGCCT 1 cut(s) 345
PdmI GAANNNNTTC 2 cut(s) 79, 144
PfeI GAWTC 6 cut(s) 242, 316, 328, 504, 526, 633
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 212, 415, 453, 645
PspPI GGNCC 4 cut(s) 211, 414, 452, 643
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 2 cut(s) 72, 714
RsaNI GTAC 2 cut(s) 71, 713
RseI CAYNNNNRTG 1 cut(s) 686
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 4 cut(s) 211, 414, 452, 643
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 117, 623
SduI GDGCHC 1 cut(s) 132
SetI ASST 8 cut(s) 82, 99, 132, 435, 468, 595, 606, 642
SfaNI GCATC 2 cut(s) 217, 685
SgsI GGCGCGCC 1 cut(s) 111
SinI GGWCC 3 cut(s) 211, 452, 643
SmiMI CAYNNNNRTG 1 cut(s) 686
Sse9I AATT 1 cut(s) 144
SseBI AGGCCT 1 cut(s) 345
SsiI CCGC 4 cut(s) 157, 214, 508, 674
SspMI CTAG 2 cut(s) 98, 351
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 115, 621
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 274, 486, 762
TasI AATT 1 cut(s) 144
TfiI GAWTC 6 cut(s) 242, 316, 328, 504, 526, 633
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 5 cut(s) 19, 341, 396, 704, 722
TspGWI ACGGA 2 cut(s) 138, 239
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 3 cut(s) 211, 452, 643
XbaI TCTAGA 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 486
XmnI GAANNNNTTC 2 cut(s) 79, 144
XspI CTAG 2 cut(s) 98, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.