Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000124

Physical Location & Seq

Genomic Coordinates Reverse (-)

9067097 .. 9069784

Gene Structure 2688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0103000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGAAGTCACTCTTGATCATCATCAACACTCTCCTCCCACTCACCCCCTACCTCACCACCTTCCTCCTCCTCCTCCTCTTCCTTGAACAACTCTCCTACCTCAAAAAGAAACGCACCGTTCCCGGTCCCTCCCTCGTCCTCCCATTTCTCGGCAACGCAGTCTCCCTAGTCCGCAACCCGACCCGCTTCTGGGACCTCCAATCCTCCCTCTCCACGTCATCCGGCCTCTCCGCCAACTACATCGTCGGCAACTTCATCCTCTTCATCCGCGACACCTCTCTCTCCCACAAAGTCTTCGCCAATGTACGACCCGACGCCTTCACCCTCGTCGGCCACCCCTTCGGAAAGAAACTCTTCGGCGAGCACAACCTCATTTACATGACCGGCCAGGAGCACAAAGACCTACGACGTCGTATCGCCCCCAACTTCACTCCCAAAGCCCTCGCCACCTACACCGCGCTCCAGCAGATTATTATCCTTGAACACCTCAAAAACTGGGTTCGCCTCACGTCTCAGACCAAGGACCCGATCGCGCTCCGGTTCTTGGTCCGAGACATGAATCTGGAGACTTCCCAGACGGTTTTCGTTGGACCATACTTGGCCCCCGACGCCCGCGAGAGGTTCAAGTCGGATTATAACTTCTTCAACGTTGGACTCATGAAGCTGCCCGTTAACCTGCCCGGGACCGCGTTCAGAAACGCCAGGCTGGCTGTGGCGCGCCTCGTCGAAACGCTCGCCGGCTGCGCCAAACAAAGCAGGGCGAAAATGGAAGCAGAGCAACAAGAGCCGACGTGTTTAATCGATTTCTGGATGCAGGAGACGGTAAAGGAGCTCCGCGCCGGCGTGGCTGACATCAGTGACGTCGAGGTCGGCGCTCACCTGTTCGACTTTCTATTTGCTGCCCAGGACGCCTCAACTTCGTCGCTGCTGTGGGCGGTGGTGCTGCTCGACTCGCACCCGGAGGTTCTGGCCAAGGTCCGGGAAGAGGTCGCTGGAGTTTGGGACCCGGAGTCGGACGAGCTGATCACTGCGGACCAGCTGGCGCGGATGAGGTACACGCACGCGGTGGCGCGTGAGGTGGTCAGGTACCGTGCTCCGGCCACCATGGTCCCTCACATTGCGGCGGTTGACTTTCGGTTGACCGAGACGTACACAGTCCCCAAGGGTACCATTGTGTTTCCCTCCGCCTACGAGTCTTGCTTTCAGGGGTTCACGGAACCGGAGCGGTTCGACCCGGACCGGTTCTCGGAGGAGAGACAGGAGGACCGGGTGTACAGGAGGAACTACCTGGCGTTCGGGGCCGGGGCCCACCAGTGCGTGGGGCAGAGATACGCTCTGAACCACCTGGTGCTCTTCATCGCGGTGTTCGCCACGTTGCTGGATTTCAAGAGGCACAGAACGGACGGCTGCGATGACATCTCGTACGTTCCGACGATCTGCCCCAAAGACGATTGCAAGGTTTTCCTCTCGATGCGGTGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

494

Amino Acids

56.04

Weight (kDa)

8.51

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	41 - 456	3.2e-51	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis	RchiOBHm_Chr2g0155611
rosa_laevigata	RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora	Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii	Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa	Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha	Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana	Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AasI	GACNNNNNNGTC	1 cut(s)	866
AatII	GACGTC	2 cut(s)	412, 864
Acc36I	ACCTGC	1 cut(s)	684
Acc65I	GGTACC	2 cut(s)	1086, 1166
AccB1I	GGYRCC	3 cut(s)	1086, 1166, 1476
AccB7I	CCANNNNNTGG	1 cut(s)	1318
AccBSI	CCGCTC	1 cut(s)	1225
AclI	AACGTT	1 cut(s)	648
AcoI	YGGCCR	4 cut(s)	331, 385, 969, 1098
AcyI	GRCGYC	5 cut(s)	315, 409, 609, 861, 909
AdeI	CACNNNGTG	2 cut(s)	1066, 1348
AfaI	GTAC	7 cut(s)	306, 1055, 1088, 1151, 1168, 1274, 1424
AflIII	ACRYGT	1 cut(s)	791
AgeI	ACCGGT	1 cut(s)	1239
AgsI	TTSAA	5 cut(s)	86, 482, 625, 646, 1387
AhdI	GACNNNNNGTC	1 cut(s)	1009
AjiI	CACGTC	3 cut(s)	216, 510, 792
AjnI	CCWGG	5 cut(s)	387, 701, 903, 1287, 1344
AluBI	AGCT	4 cut(s)	664, 832, 1021, 1039
AluI	AGCT	4 cut(s)	664, 832, 1021, 1039
Alw21I	GWGCWC	5 cut(s)	366, 396, 834, 1096, 1353
Alw26I	GTCTC	7 cut(s)	166, 516, 546, 560, 812, 1139, 1249
Ama87I	CYCGRG	1 cut(s)	680
AoxI	GGCC	8 cut(s)	223, 331, 385, 600, 969, 1098, 1299, 1305
ApaI	GGGCCC	1 cut(s)	1309
ApeKI	GCWGC	6 cut(s)	664, 741, 899, 925, 943, 1407
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AscI	GGCGCGCC	1 cut(s)	716
AsiGI	ACCGGT	1 cut(s)	1239
Asp700I	GAANNNNTTC	1 cut(s)	353
Asp718I	GGTACC	2 cut(s)	1086, 1166
AspLEI	GCGC	9 cut(s)	460, 535, 718, 720, 746, 839, 875, 1045, 1072
AsuC2I	CCSGG	9 cut(s)	123, 681, 682, 959, 980, 1007, 1235, 1268, 1303
AsuHPI	GGTGA	4 cut(s)	34, 46, 313, 869
AvaI	CYCGRG	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	1309
BaeI	ACNNNNGTAYC	2 cut(s)	1158, 1191
BalI	TGGCCA	1 cut(s)	971
BanI	GGYRCC	3 cut(s)	1086, 1166, 1476
BanII	GRGCYC	2 cut(s)	834, 1309
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	5 cut(s)	366, 396, 834, 1096, 1353
BbvI	GCAGC	6 cut(s)	651, 728, 886, 912, 930, 1394
BceAI	ACGGC	1 cut(s)	1420
BciT130I	CCWGG	5 cut(s)	389, 703, 905, 1289, 1346
BclI	TGATCA	2 cut(s)	15, 1023
BcnI	CCSGG	9 cut(s)	123, 681, 682, 959, 980, 1007, 1235, 1268, 1303
BcoDI	GTCTC	7 cut(s)	166, 516, 546, 560, 812, 1139, 1249
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	876
BfuAI	ACCTGC	1 cut(s)	684
BglI	GCCNNNNNGGC	2 cut(s)	707, 845
BisI	GCNGC	8 cut(s)	665, 742, 900, 926, 944, 1122, 1408, 1480
BlsI	GCNGC	8 cut(s)	666, 743, 901, 927, 945, 1123, 1409, 1481
BmeRI	GACNNNNNGTC	1 cut(s)	1009
BmeT110I	CYCGRG	1 cut(s)	680
BmgBI	CACGTC	3 cut(s)	216, 510, 792
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	801, 1461
BmuI	ACTGGG	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	1318, 1350
BpmI	CTGGAG	3 cut(s)	446, 584, 1014
BpuMI	CCSGG	9 cut(s)	123, 681, 682, 959, 980, 1007, 1235, 1268, 1303
Bsa29I	ATCGAT	1 cut(s)	801
BsaBI	GATNNNNATC	2 cut(s)	20, 473
BsaHI	GRCGYC	5 cut(s)	315, 409, 609, 861, 909
BsaJI	CCNNGG	7 cut(s)	519, 680, 903, 972, 1104, 1161, 1302
BsaWI	WCCGGW	3 cut(s)	537, 1219, 1239
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse118I	RCCGGY	4 cut(s)	383, 737, 839, 1239
Bse1I	ACTGG	2 cut(s)	500, 1312
Bse3DI	GCAATG	1 cut(s)	1116
Bse8I	GATNNNNATC	2 cut(s)	20, 473
BseBI	CCWGG	5 cut(s)	389, 703, 905, 1289, 1346
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	7 cut(s)	519, 680, 903, 972, 1104, 1161, 1302
BseGI	GGATG	5 cut(s)	218, 255, 264, 816, 1053
BseJI	GATNNNNATC	2 cut(s)	20, 473
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	2 cut(s)	500, 1312
BsePI	GCGCGC	1 cut(s)	716
BseRI	GAGGAG	6 cut(s)	23, 56, 59, 62, 65, 1265
BseSI	GKGCMC	1 cut(s)	1309
BseXI	GCAGC	6 cut(s)	651, 728, 886, 912, 930, 1394
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	8 cut(s)	225, 333, 387, 602, 971, 1100, 1301, 1307
BshNI	GGYRCC	3 cut(s)	1086, 1166, 1476
BshTI	ACCGGT	1 cut(s)	1239
BshVI	ATCGAT	1 cut(s)	801
BsiEI	CGRYCG	1 cut(s)	531
BsiHKAI	GWGCWC	5 cut(s)	366, 396, 834, 1096, 1353
BsiHKCI	CYCGRG	1 cut(s)	680
BsiWI	CGTACG	1 cut(s)	1422
BslFI	GGGAC	6 cut(s)	111, 206, 697, 1016, 1094, 1142
BsmAI	GTCTC	7 cut(s)	166, 516, 546, 560, 812, 1139, 1249
BsmBI	CGTCTC	3 cut(s)	516, 812, 1139
BsmFI	GGGAC	6 cut(s)	111, 206, 697, 1016, 1094, 1142
BsnI	GGCC	8 cut(s)	225, 333, 387, 602, 971, 1100, 1301, 1307
BsoBI	CYCGRG	1 cut(s)	680
Bsp120I	GGGCCC	1 cut(s)	1305
Bsp1286I	GDGCHC	6 cut(s)	366, 396, 834, 1096, 1309, 1353
Bsp1407I	TGTACA	1 cut(s)	1272
Bsp143I	GATC	4 cut(s)	15, 528, 1023, 1434
Bsp19I	CCATGG	1 cut(s)	1104
BspANI	GGCC	8 cut(s)	225, 333, 387, 602, 971, 1100, 1301, 1307
BspCNI	CTCAG	1 cut(s)	526
BspDI	ATCGAT	1 cut(s)	801
BspHI	TCATGA	1 cut(s)	657
BspMI	ACCTGC	1 cut(s)	684
BspQI	GCTCTTC	1 cut(s)	1358
BspT107I	GGYRCC	3 cut(s)	1086, 1166, 1476
BsrBI	CCGCTC	1 cut(s)	1225
BsrDI	GCAATG	1 cut(s)	1116
BsrFI	RCCGGY	4 cut(s)	383, 737, 839, 1239
BsrGI	TGTACA	1 cut(s)	1272
BsrI	ACTGG	2 cut(s)	500, 1312
BssAI	RCCGGY	4 cut(s)	383, 737, 839, 1239
BssECI	CCNNGG	7 cut(s)	519, 680, 903, 972, 1104, 1161, 1302
BssHII	GCGCGC	1 cut(s)	716
BssMI	GATC	4 cut(s)	15, 528, 1023, 1434
BssNI	GRCGYC	5 cut(s)	315, 409, 609, 861, 909
BssT1I	CCWWGG	4 cut(s)	519, 972, 1104, 1161
Bst2UI	CCWGG	5 cut(s)	389, 703, 905, 1289, 1346
Bst4CI	ACNGT	5 cut(s)	118, 580, 823, 1091, 1156
Bst6I	CTCTTC	5 cut(s)	83, 266, 359, 978, 1358
BstACI	GRCGYC	5 cut(s)	315, 409, 609, 861, 909
BstAUI	TGTACA	1 cut(s)	1272
BstC8I	GCNNGC	9 cut(s)	362, 613, 708, 718, 735, 739, 841, 1041, 1062
BstDEI	CTNAG	1 cut(s)	513
BstDSI	CCRYGG	1 cut(s)	1104
BstF5I	GGATG	5 cut(s)	218, 255, 264, 816, 1053
BstH2I	RGCGCY	1 cut(s)	876
BstHHI	GCGC	9 cut(s)	460, 535, 718, 720, 746, 839, 875, 1045, 1072
BstKTI	GATC	4 cut(s)	18, 531, 1026, 1437
BstMAI	GTCTC	7 cut(s)	166, 516, 546, 560, 812, 1139, 1249
BstMBI	GATC	4 cut(s)	15, 528, 1023, 1434
BstMCI	CGRYCG	1 cut(s)	531
BstMWI	GCNNNNNNNGC	9 cut(s)	608, 707, 743, 784, 845, 908, 952, 1298, 1367
BstNI	CCWGG	5 cut(s)	389, 703, 905, 1289, 1346
BstSLI	GKGCMC	1 cut(s)	1309
BstV1I	GCAGC	6 cut(s)	651, 728, 886, 912, 930, 1394
BstV2I	GAAGAC	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	1378
Bsu15I	ATCGAT	1 cut(s)	801
BsuRI	GGCC	8 cut(s)	225, 333, 387, 602, 971, 1100, 1301, 1307
BsuTUI	ATCGAT	1 cut(s)	801
BtgI	CCRYGG	1 cut(s)	1104
BtgZI	GCGATG	2 cut(s)	1342, 1425
BtrI	CACGTC	3 cut(s)	216, 510, 792
BtsCI	GGATG	5 cut(s)	218, 255, 264, 816, 1053
BtsI	GCAGTG	1 cut(s)	1026
BtsIMutI	CAGTG	3 cut(s)	862, 1026, 1319
BveI	ACCTGC	1 cut(s)	684
Cac8I	GCNNGC	9 cut(s)	362, 613, 708, 718, 735, 739, 841, 1041, 1062
CciI	TCATGA	1 cut(s)	657
CfoI	GCGC	9 cut(s)	460, 535, 718, 720, 746, 839, 875, 1045, 1072
Cfr10I	RCCGGY	4 cut(s)	383, 737, 839, 1239
Cfr9I	CCCGGG	1 cut(s)	680
ClaI	ATCGAT	1 cut(s)	801
CpoI	CGGWCCG	1 cut(s)	1237
CseI	GACGC	3 cut(s)	323, 617, 917
CsiI	ACCWGGT	1 cut(s)	1344
Csp6I	GTAC	7 cut(s)	305, 1054, 1087, 1150, 1167, 1273, 1423
CspAI	ACCGGT	1 cut(s)	1239
CspI	CGGWCCG	1 cut(s)	1237
CviAII	CATG	4 cut(s)	379, 556, 658, 1105
CviQI	GTAC	7 cut(s)	305, 1054, 1087, 1150, 1167, 1273, 1423
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	4 cut(s)	17, 530, 1025, 1436
DpnII	GATC	4 cut(s)	15, 528, 1023, 1434
DraIII	CACNNNGTG	2 cut(s)	1066, 1348
DrdI	GACNNNNNNGTC	1 cut(s)	866
DriI	GACNNNNNGTC	1 cut(s)	1009
DseDI	GACNNNNNNGTC	1 cut(s)	866
EaeI	YGGCCR	4 cut(s)	331, 385, 969, 1098
Eam1104I	CTCTTC	5 cut(s)	83, 266, 359, 978, 1358
Eam1105I	GACNNNNNGTC	1 cut(s)	1009
EarI	CTCTTC	5 cut(s)	83, 266, 359, 978, 1358
EciI	GGCGGA	2 cut(s)	220, 1174
Ecl136II	GAGCTC	1 cut(s)	832
Eco130I	CCWWGG	4 cut(s)	519, 972, 1104, 1161
Eco24I	GRGCYC	2 cut(s)	834, 1309
Eco53kI	GAGCTC	1 cut(s)	832
Eco88I	CYCGRG	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	832
EcoO109I	RGGNCCY	4 cut(s)	193, 523, 1003, 1305
EcoRII	CCWGG	5 cut(s)	387, 701, 903, 1287, 1344
EcoT14I	CCWWGG	4 cut(s)	519, 972, 1104, 1161
EcoT38I	GRGCYC	2 cut(s)	834, 1309
ErhI	CCWWGG	4 cut(s)	519, 972, 1104, 1161
Esp3I	CGTCTC	3 cut(s)	516, 812, 1139
FaeI	CATG	4 cut(s)	382, 559, 661, 1108
FaiI	YATR	6 cut(s)	380, 557, 595, 636, 659, 1106
FalI	AAGNNNNNCTT	3 cut(s)	28, 338, 370
FaqI	GGGAC	6 cut(s)	111, 206, 697, 1016, 1094, 1142
FatI	CATG	4 cut(s)	378, 555, 657, 1104
FauI	CCCGC	2 cut(s)	191, 620
FbaI	TGATCA	2 cut(s)	15, 1023
Fnu4HI	GCNGC	8 cut(s)	665, 742, 900, 926, 944, 1122, 1408, 1480
FokI	GGATG	5 cut(s)	205, 242, 251, 823, 1060
FriOI	GRGCYC	2 cut(s)	834, 1309
Fsp4HI	GCNGC	8 cut(s)	665, 742, 900, 926, 944, 1122, 1408, 1480
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	9 cut(s)	459, 534, 717, 719, 745, 838, 874, 1044, 1071
GluI	GCNGC	8 cut(s)	665, 742, 900, 926, 944, 1122, 1408, 1480
GsuI	CTGGAG	3 cut(s)	446, 584, 1014
HaeII	RGCGCY	1 cut(s)	876
HaeIII	GGCC	8 cut(s)	225, 333, 387, 602, 971, 1100, 1301, 1307
HgaI	GACGC	3 cut(s)	323, 617, 917
HhaI	GCGC	9 cut(s)	460, 535, 718, 720, 746, 839, 875, 1045, 1072
Hin1I	GRCGYC	5 cut(s)	315, 409, 609, 861, 909
Hin1II	CATG	4 cut(s)	382, 559, 661, 1108
Hin6I	GCGC	9 cut(s)	458, 533, 716, 718, 744, 837, 873, 1043, 1070
HinP1I	GCGC	9 cut(s)	458, 533, 716, 718, 744, 837, 873, 1043, 1070
HincII	GTYRAC	3 cut(s)	673, 1129, 1140
HindII	GTYRAC	3 cut(s)	673, 1129, 1140
HinfI	GANTC	5 cut(s)	559, 654, 950, 1010, 1193
HpaI	GTTAAC	1 cut(s)	673
HphI	GGTGA	4 cut(s)	34, 46, 313, 869
Hpy166II	GTNNAC	7 cut(s)	673, 1056, 1129, 1140, 1152, 1212, 1273
Hpy188I	TCNGA	9 cut(s)	344, 516, 551, 631, 695, 1015, 1249, 1338, 1431
Hpy188III	TCNNGA	6 cut(s)	13, 563, 658, 808, 1387, 1468
Hpy8I	GTNNAC	7 cut(s)	673, 1056, 1129, 1140, 1152, 1212, 1273
HpyAV	CCTTC	3 cut(s)	70, 328, 349
HpyCH4III	ACNGT	5 cut(s)	118, 580, 823, 1091, 1156
HpyCH4IV	ACGT	9 cut(s)	215, 409, 509, 648, 791, 861, 1148, 1373, 1425
HpyCH4V	TGCA	2 cut(s)	814, 1455
HpyF10VI	GCNNNNNNNGC	9 cut(s)	608, 707, 743, 784, 845, 908, 952, 1298, 1367
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	9 cut(s)	215, 409, 509, 648, 791, 861, 1148, 1373, 1425
Hsp92I	GRCGYC	5 cut(s)	315, 409, 609, 861, 909
Hsp92II	CATG	4 cut(s)	382, 559, 661, 1108
HspAI	GCGC	9 cut(s)	458, 533, 716, 718, 744, 837, 873, 1043, 1070
KflI	GGGWCCC	1 cut(s)	1003
KpnI	GGTACC	2 cut(s)	1090, 1170
KroI	GCCGGC	2 cut(s)	737, 839
KroNI	GCCGGC	2 cut(s)	739, 841
Ksp22I	TGATCA	2 cut(s)	15, 1023
KspAI	GTTAAC	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	15, 528, 1023, 1434
LguI	GCTCTTC	1 cut(s)	1358
LmnI	GCTCC	7 cut(s)	391, 465, 540, 829, 837, 1099, 1222
Lsp1109I	GCAGC	6 cut(s)	651, 728, 886, 912, 930, 1394
LweI	GCATC	2 cut(s)	801, 1461
MabI	ACCWGGT	1 cut(s)	1344
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	9 cut(s)	215, 409, 509, 648, 791, 861, 1148, 1373, 1425
MaeIII	GTNAC	2 cut(s)	6, 857
MalI	GATC	4 cut(s)	17, 530, 1025, 1436
MbiI	CCGCTC	1 cut(s)	1225
MboI	GATC	4 cut(s)	15, 528, 1023, 1434
MboII	GAAGA	7 cut(s)	70, 253, 286, 346, 634, 995, 1345
MhlI	GDGCHC	6 cut(s)	366, 396, 834, 1096, 1309, 1353
MlsI	TGGCCA	1 cut(s)	971
MluNI	TGGCCA	1 cut(s)	971
MlyI	GAGTC	4 cut(s)	648, 944, 1019, 1202
MmeI	TCCRAC	5 cut(s)	568, 609, 631, 993, 1454
Mox20I	TGGCCA	1 cut(s)	971
MreI	CGCCGGCG	1 cut(s)	839
MroNI	GCCGGC	2 cut(s)	737, 839
MroXI	GAANNNNTTC	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	971
MseI	TTAA	2 cut(s)	672, 797
MslI	CAYNNNNRTG	2 cut(s)	377, 1361
Msp20I	TGGCCA	1 cut(s)	971
MspA1I	CMGCKG	2 cut(s)	1039, 1482
MvaI	CCWGG	5 cut(s)	389, 703, 905, 1289, 1346
MwoI	GCNNNNNNNGC	9 cut(s)	608, 707, 743, 784, 845, 908, 952, 1298, 1367
NaeI	GCCGGC	2 cut(s)	739, 841
NciI	CCSGG	9 cut(s)	123, 681, 682, 959, 980, 1007, 1235, 1268, 1303
NcoI	CCATGG	1 cut(s)	1104
NdeII	GATC	4 cut(s)	15, 528, 1023, 1434
NgoMIV	GCCGGC	2 cut(s)	737, 839
NlaIII	CATG	4 cut(s)	382, 559, 661, 1108
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	6, 857
PagI	TCATGA	1 cut(s)	657
PalAI	GGCGCGCC	1 cut(s)	716
PauI	GCGCGC	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	1358
PcsI	WCGNNNNNNNCGW	1 cut(s)	1427
PdiI	GCCGGC	2 cut(s)	739, 841
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	559
Pfl23II	CGTACG	1 cut(s)	1422
PflMI	CCANNNNNTGG	1 cut(s)	1318
PfoI	TCCNGGA	1 cut(s)	978
PinAI	ACCGGT	1 cut(s)	1239
PkrI	GCNGC	8 cut(s)	666, 743, 901, 927, 945, 1123, 1409, 1481
Ple19I	CGATCG	1 cut(s)	531
PleI	GAGTC	4 cut(s)	648, 944, 1018, 1201
PpsI	GAGTC	4 cut(s)	648, 944, 1018, 1201
PpuMI	RGGWCCY	3 cut(s)	193, 523, 1003
PsiI	TTATAA	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	834
Psp1406I	AACGTT	1 cut(s)	648
Psp5II	RGGWCCY	3 cut(s)	193, 523, 1003
Psp6I	CCWGG	5 cut(s)	387, 701, 903, 1287, 1344
PspGI	CCWGG	5 cut(s)	387, 701, 903, 1287, 1344
PspLI	CGTACG	1 cut(s)	1422
PspOMI	GGGCCC	1 cut(s)	1305
PspPPI	RGGWCCY	3 cut(s)	193, 523, 1003
PteI	GCGCGC	1 cut(s)	716
PvuI	CGATCG	1 cut(s)	531
PvuII	CAGCTG	1 cut(s)	1039
RsaI	GTAC	7 cut(s)	306, 1055, 1088, 1151, 1168, 1274, 1424
RsaNI	GTAC	7 cut(s)	305, 1054, 1087, 1150, 1167, 1273, 1423
RseI	CAYNNNNRTG	2 cut(s)	377, 1361
Rsr2I	CGGWCCG	1 cut(s)	1237
RsrII	CGGWCCG	1 cut(s)	1237
SacI	GAGCTC	1 cut(s)	834
SapI	GCTCTTC	1 cut(s)	1358
SaqAI	TTAA	2 cut(s)	672, 797
SatI	GCNGC	8 cut(s)	665, 742, 900, 926, 944, 1122, 1408, 1480
Sau3AI	GATC	4 cut(s)	15, 528, 1023, 1434
SchI	GAGTC	4 cut(s)	648, 944, 1019, 1202
SduI	GDGCHC	6 cut(s)	366, 396, 834, 1096, 1309, 1353
SexAI	ACCWGGT	1 cut(s)	1344
SfaNI	GCATC	2 cut(s)	801, 1461
SgrAI	CRCCGGYG	1 cut(s)	839
SgsI	GGCGCGCC	1 cut(s)	716
SmaI	CCCGGG	1 cut(s)	682
SmiMI	CAYNNNNRTG	2 cut(s)	377, 1361
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	834
StyI	CCWWGG	4 cut(s)	519, 972, 1104, 1161
TaaI	ACNGT	5 cut(s)	118, 580, 823, 1091, 1156
TaiI	ACGT	9 cut(s)	218, 412, 512, 651, 794, 864, 1151, 1376, 1428
TaqI	TCGA	7 cut(s)	726, 801, 864, 885, 948, 1230, 1469
TaqII	GACCGA	1 cut(s)	1157
TatI	WGTACW	1 cut(s)	1272
TauI	GCSGC	2 cut(s)	1124, 1482
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	2 cut(s)	672, 797
Tru9I	TTAA	2 cut(s)	672, 797
TscAI	CASTG	3 cut(s)	862, 1033, 1319
TseFI	GTSAC	2 cut(s)	6, 857
TseI	GCWGC	6 cut(s)	664, 741, 899, 925, 943, 1407
Tsp45I	GTSAC	2 cut(s)	6, 857
TspDTI	ATGAA	6 cut(s)	17, 244, 253, 572, 674, 1345
TspGWI	ACGGA	2 cut(s)	1229, 1415
TspMI	CCCGGG	1 cut(s)	680
TspRI	CASTG	3 cut(s)	862, 1033, 1319
Van91I	CCANNNNNTGG	1 cut(s)	1318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XmaI	CCCGGG	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	167
ZraI	GACGTC	2 cut(s)	410, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.