Rh1AG004800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000124
Physical Location & Seq
Forward (+)
692661 .. 693444
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG004800.1

Sequence Viewer

Length: 342 bp
ATGACATTCGTTGTGCAGAAGTTGAAGTTCCAAATGGTTACAATTGGAGAGGAATCTGTACACACAACAGATATACCATACTTTGTGACCAGATTGGATAATACGCTGGCCGAAAGTCAAACACTGAAAATACCGACTGCTTTTAGGAAGCTGCATATGGCAGGGGATGACAATACGGTTGCAGTTCTTAAGTTGATCAGATTACGCAACAATGCATGGAAGGTGCATGTGGTGTCGAAACGTAATGGAAAGTTTTTTTCTCGCGGATGGGACTGGTTTCTACGGGACACTTGTGGAGTAGAAGAGACGGTGACACTTATGTTTCGTATGAAGGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.19

Weight (kDa)

9.66

Isoelectric Point (pI)

19.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 264
AciI CCGC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 108
AfaI GTAC 1 cut(s) 60
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 299
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 322
BbvI GCAGC 1 cut(s) 138
BccI CCATC 1 cut(s) 261
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 172, 272
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 110
BslFI GGGAC 2 cut(s) 284, 299
BsmAI GTCTC 1 cut(s) 299
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 2 cut(s) 284, 299
BsnI GGCC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 1 cut(s) 264
BspANI GGCC 1 cut(s) 110
BspFNI CGCG 1 cut(s) 264
BspTI CTTAAG 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 58
BsrI ACTGG 1 cut(s) 278
BssMI GATC 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 178, 310
Bst6I CTCTTC 1 cut(s) 297
BstAFI CTTAAG 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 108
BstF5I GGATG 2 cut(s) 172, 272
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 230
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 172, 272
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 59
CviAII CATG 2 cut(s) 216, 227
CviJI RGCY 2 cut(s) 110, 151
CviKI_1 RGCY 2 cut(s) 110, 151
CviQI GTAC 1 cut(s) 59
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 2 cut(s) 219, 230
FaiI YATR 9 cut(s) 74, 79, 156, 158, 217, 228, 320, 329, 340
FaqI GGGAC 2 cut(s) 284, 299
FatI CATG 2 cut(s) 215, 226
FauNDI CATATG 1 cut(s) 156
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 2 cut(s) 179, 279
Fsp4HI GCNGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 152
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 2 cut(s) 219, 230
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 214, 325
HpyCH4III ACNGT 2 cut(s) 178, 310
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 16, 154, 182, 215, 226
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 2 cut(s) 219, 230
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 4 cut(s) 92, 103, 147, 259
Lsp1109I GCAGC 1 cut(s) 138
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 37, 85, 310
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 1 cut(s) 314
MfeI CAATTG 1 cut(s) 42
MluCI AATT 1 cut(s) 42
MnlI CCTC 1 cut(s) 43
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 1 cut(s) 189
MspCI CTTAAG 1 cut(s) 188
MunI CAATTG 1 cut(s) 42
MvnI CGCG 1 cut(s) 264
NdeI CATATG 1 cut(s) 156
NdeII GATC 1 cut(s) 195
NlaIII CATG 2 cut(s) 219, 230
NmuCI GTSAC 2 cut(s) 85, 310
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 1 cut(s) 230
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 153
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 1 cut(s) 195
SetI ASST 3 cut(s) 153, 225, 244
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 264
TaaI ACNGT 2 cut(s) 178, 310
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 236
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 2 cut(s) 85, 310
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 2 cut(s) 85, 310
TspRI CASTG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 188
XceI RCATGY 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.