Rmu_sc0006514.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006514.1
OG0000124
Physical Location & Seq
Reverse (-)
124379 .. 127220
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006514.1_g000028.1.cds

Sequence Viewer

Length: 924 bp
atggagggtgtgaaacagcaccaggaggaaggaactcccgtggtcgggggatgtttgatatttcttcaacttctataccttgacaaagtgggggacgttcttacacctgataaggacaacctttgtacacctgtaatgtattggaacactaataaggtgcaggaaattgtgaacaagataaggttgacgggaggccacaaaagtcctattgtcatgttggagaagagcaagaggacgaagagattacaagacgcaggtcatgaatgcggggtttcgggattcggactgaagcgggacgtccacaagaccatgatggccttgcagttggatgtgagttcgatgaaggatcgcatgttggatatgaaatgggaaggcatgggagggattgatgagacaaaaatgcatccttccaccgtgggaatgtgcaacgataactgcagtagagaaattcatttgtcgaataacaagatattcttacctgtgcatgacggttcaatcaaggatgggcattggattctcattgtggttgacatggtcaaaaacattgctgaagtatgggatagcggactaggaccaatactacagccattgacaatggaaaacattttgcttgtgctgagacacatagatcgggtaatgtggcttgataacataacgcaacctggaagcatggtaaaggtagaagattctacaattgttgaggccccgaatgtgccaaagcaacaaaacgcatttgactgcgccccaaataacgagtcggatgcaaacgtaggagcggctatcgtaaatagtgacaatggggttgaaaaaaaaaagcaatgcagcatgatggtttgcatcagaatggagaaggaaagcatatggaagaatgagaaaaaggagggaaaggggagtatagccacatacaaggtcgtgcaggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

307

Amino Acids

34.31

Weight (kDa)

6.16

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
Acc36I ACCTGC 1 cut(s) 245
AccBSI CCGCTC 1 cut(s) 776
AciI CCGC 4 cut(s) 267, 292, 564, 776
AclWI GGATC 1 cut(s) 354
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 2 cut(s) 308, 570
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 44, 45
AgsI TTSAA 3 cut(s) 68, 495, 806
AjnI CCWGG 2 cut(s) 21, 661
Alw26I GTCTC 2 cut(s) 386, 613
AlwI GGATC 1 cut(s) 354
AoxI GGCC 3 cut(s) 193, 315, 702
ApeKI GCWGC 1 cut(s) 822
ApoI RAATTY 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 2 cut(s) 572, 703
AvaII GGWCC 1 cut(s) 572
BbvI GCAGC 1 cut(s) 834
BccI CCATC 3 cut(s) 307, 497, 823
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 2 cut(s) 23, 663
BcoDI GTCTC 2 cut(s) 386, 613
BfaI CTAG 2 cut(s) 569, 922
BfmI CTRYAG 2 cut(s) 436, 581
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 777, 823
BlsI GCNGC 2 cut(s) 778, 824
Bme1390I CCNGG 2 cut(s) 23, 663
Bme18I GGWCC 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 572, 703
BmiI GGNNCC 1 cut(s) 705
BmrFI CCNGG 2 cut(s) 23, 663
BmsI GCATC 3 cut(s) 412, 751, 846
BoxI GACNNNNGTC 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 39, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 45
Bse3DI GCAATG 2 cut(s) 543, 824
BseBI CCWGG 2 cut(s) 23, 663
BseDI CCNNGG 2 cut(s) 39, 414
BseGI GGATG 5 cut(s) 56, 334, 403, 508, 766
BseLI CCNNNNNNNGG 2 cut(s) 44, 45
BseMI GCAATG 2 cut(s) 543, 824
BseMII CTCAG 1 cut(s) 608
BseXI GCAGC 1 cut(s) 834
BsgI GTGCAG 1 cut(s) 179
BshFI GGCC 3 cut(s) 195, 317, 704
BslFI GGGAC 2 cut(s) 107, 308
BslI CCNNNNNNNGG 2 cut(s) 44, 45
BsmAI GTCTC 2 cut(s) 386, 613
BsmFI GGGAC 2 cut(s) 107, 308
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 3 cut(s) 195, 317, 704
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 2 cut(s) 346, 628
BspACI CCGC 4 cut(s) 267, 292, 564, 776
BspANI GGCC 3 cut(s) 195, 317, 704
BspCNI CTCAG 1 cut(s) 609
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 705
BspMAI CTGCAG 1 cut(s) 440
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 776
BsrDI GCAATG 2 cut(s) 543, 824
BsrGI TGTACA 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 39, 414
BssMI GATC 2 cut(s) 346, 628
BssNI GRCGYC 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 23, 663
Bst4CI ACNGT 2 cut(s) 415, 491
Bst6I CTCTTC 2 cut(s) 218, 233
BstACI GRCGYC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 617
BstDSI CCRYGG 2 cut(s) 39, 414
BstF5I GGATG 5 cut(s) 56, 334, 403, 508, 766
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 2 cut(s) 349, 631
BstMAI GTCTC 2 cut(s) 386, 613
BstMBI GATC 2 cut(s) 346, 628
BstNI CCWGG 2 cut(s) 23, 663
BstNSI RCATGY 1 cut(s) 355
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 2 cut(s) 21, 661
BstSFI CTRYAG 2 cut(s) 436, 581
BstV1I GCAGC 1 cut(s) 834
BsuRI GGCC 3 cut(s) 195, 317, 704
BtgI CCRYGG 2 cut(s) 39, 414
BtsCI GGATG 5 cut(s) 56, 334, 403, 508, 766
BveI ACCTGC 1 cut(s) 245
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 743
Cfr13I GGNCC 2 cut(s) 572, 703
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 126
CviAII CATG 9 cut(s) 214, 260, 310, 352, 376, 485, 532, 670, 826
CviJI RGCY 7 cut(s) 195, 317, 586, 643, 704, 779, 899
CviKI_1 RGCY 7 cut(s) 195, 317, 586, 643, 704, 779, 899
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 617
DpnI GATC 2 cut(s) 348, 630
DpnII GATC 2 cut(s) 346, 628
Eam1104I CTCTTC 2 cut(s) 218, 233
EarI CTCTTC 2 cut(s) 218, 233
Eco47I GGWCC 1 cut(s) 572
Eco57I CTGAAG 2 cut(s) 308, 570
EcoO109I RGGNCCY 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 21, 661
EcoT22I ATGCAT 1 cut(s) 405
FaeI CATG 9 cut(s) 217, 263, 313, 355, 379, 488, 535, 673, 829
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 2 cut(s) 107, 308
FatI CATG 9 cut(s) 213, 259, 309, 351, 375, 484, 531, 669, 825
FauI CCCGC 2 cut(s) 260, 285
FauNDI CATATG 1 cut(s) 860
Fnu4HI GCNGC 2 cut(s) 777, 823
FokI GGATG 5 cut(s) 63, 341, 390, 515, 773
Fsp4HI GCNGC 2 cut(s) 777, 823
FspBI CTAG 2 cut(s) 569, 922
GlaI GCGC 1 cut(s) 742
GluI GCNGC 2 cut(s) 777, 823
HaeIII GGCC 3 cut(s) 195, 317, 704
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 743
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 9 cut(s) 217, 263, 313, 355, 379, 488, 535, 673, 829
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HincII GTYRAC 2 cut(s) 186, 529
HindII GTYRAC 2 cut(s) 186, 529
HinfI GANTC 4 cut(s) 279, 514, 686, 755
Hpy166II GTNNAC 5 cut(s) 128, 172, 186, 301, 529
Hpy188I TCNGA 3 cut(s) 284, 760, 842
Hpy188III TCNNGA 2 cut(s) 260, 276
Hpy8I GTNNAC 5 cut(s) 128, 172, 186, 301, 529
HpyAV CCTTC 5 cut(s) 23, 337, 365, 417, 844
HpyCH4III ACNGT 2 cut(s) 415, 491
HpyCH4IV ACGT 3 cut(s) 96, 297, 768
HpyF3I CTNAG 1 cut(s) 617
HpySE526I ACGT 3 cut(s) 96, 297, 768
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 9 cut(s) 217, 263, 313, 355, 379, 488, 535, 673, 829
HspAI GCGC 1 cut(s) 741
Kzo9I GATC 2 cut(s) 346, 628
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 773
Lsp1109I GCAGC 1 cut(s) 834
LweI GCATC 3 cut(s) 412, 751, 846
MaeI CTAG 2 cut(s) 569, 922
MaeII ACGT 3 cut(s) 96, 297, 768
MaeIII GTNAC 1 cut(s) 791
MalI GATC 2 cut(s) 348, 630
MbiI CCGCTC 1 cut(s) 776
MboI GATC 2 cut(s) 346, 628
MboII GAAGA 5 cut(s) 56, 235, 250, 695, 877
MfeI CAATTG 1 cut(s) 693
MluCI AATT 3 cut(s) 165, 447, 693
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 4 cut(s) 198, 306, 336, 738
MnlI CCTC 6 cut(s) 19, 185, 225, 374, 694, 874
Mph1103I ATGCAT 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 842
MspR9I CCNGG 2 cut(s) 23, 663
MunI CAATTG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 2 cut(s) 23, 663
NdeI CATATG 1 cut(s) 860
NdeII GATC 2 cut(s) 346, 628
NlaIII CATG 9 cut(s) 217, 263, 313, 355, 379, 488, 535, 673, 829
NlaIV GGNNCC 1 cut(s) 705
NmuCI GTSAC 1 cut(s) 791
NsiI ATGCAT 1 cut(s) 405
NspI RCATGY 1 cut(s) 355
PagI TCATGA 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 218
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 3 cut(s) 279, 514, 686
PflFI GACNNNGTC 1 cut(s) 533
PkrI GCNGC 2 cut(s) 778, 824
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
PshAI GACNNNNGTC 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 21, 661
PspGI CCWGG 2 cut(s) 21, 661
PspN4I GGNNCC 1 cut(s) 705
PspPI GGNCC 2 cut(s) 572, 703
PstI CTGCAG 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 533
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 842
SapI GCTCTTC 1 cut(s) 218
SatI GCNGC 2 cut(s) 777, 823
Sau3AI GATC 2 cut(s) 346, 628
Sau96I GGNCC 2 cut(s) 572, 703
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 2 cut(s) 23, 663
SfaNI GCATC 3 cut(s) 412, 751, 846
SfcI CTRYAG 2 cut(s) 436, 581
SinI GGWCC 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 842
Sse9I AATT 3 cut(s) 165, 447, 693
SsiI CCGC 4 cut(s) 267, 292, 564, 776
SspMI CTAG 2 cut(s) 569, 922
StyD4I CCNGG 2 cut(s) 21, 661
TaaI ACNGT 2 cut(s) 415, 491
TaiI ACGT 3 cut(s) 99, 300, 771
TaqI TCGA 2 cut(s) 338, 458
TasI AATT 3 cut(s) 165, 447, 693
TatI WGTACW 1 cut(s) 125
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 3 cut(s) 279, 514, 686
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 1 cut(s) 822
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 4 cut(s) 276, 356, 377, 440
Tth111I GACNNNGTC 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 572
XapI RAATTY 1 cut(s) 447
XceI RCATGY 1 cut(s) 355
XspI CTAG 2 cut(s) 569, 922
ZraI GACGTC 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.