Rmu_sc0000642.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000642.1
OG0000124
Physical Location & Seq
Reverse (-)
116292 .. 117119
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000642.1_g000017.1.cds

Sequence Viewer

Length: 669 bp
atgcacatgaaggacaacaaccaaccgatcgctgatctgtatttggacggattatcggccgttccctacttcgtcgacattacaccacaaggatcggacaagtggacggatggtgttgtggttccattacataaggaatatgacttcatcgtacaccgcttcgatgttaacggccggttgatgctcggagctcccaaaccgccctttggatttgtggtggaccagtcaatggaactgactggtattttggactccttcatgtcggacatttgggatcggaaagtaactgtgcctaatgtaagaagaggttctctgcgtgacaagctagtggcagacggcgcgccgggcaaatgtgagctccgttgggaaacaattccgtcaaggcgttggacggttcacatgacaggaaagaaagagttgacattcggttctggatgggaccgctttcaaacggatgcagggttggacgattctctgtgctgtgttttcacgcgcattggtcgattgtgtttctctgttcaagtattcaacatcaagagatggattctgtcaataaatctcagccaagcaggcctatctagaactctgcccgatgtgaaaacaaaggatgaagcctcaatggaagaagaagtcgcagttggggccgatgtggggggggcagctatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.79

Weight (kDa)

5.59

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 1 cut(s) 75
AccII CGCG 2 cut(s) 341, 493
AciI CCGC 3 cut(s) 157, 200, 442
AclWI GGATC 2 cut(s) 100, 282
AcoI YGGCCR 2 cut(s) 57, 172
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 3 cut(s) 206, 229, 651
AgsI TTSAA 3 cut(s) 449, 521, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 621, 653
AluBI AGCT 4 cut(s) 191, 325, 358, 662
AluI AGCT 4 cut(s) 191, 325, 358, 662
Alw21I GWGCWC 2 cut(s) 193, 360
AlwI GGATC 2 cut(s) 100, 282
AoxI GGCC 4 cut(s) 57, 172, 571, 642
ApeKI GCWGC 1 cut(s) 659
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
AscI GGCGCGCC 1 cut(s) 339
Asp700I GAANNNNTTC 2 cut(s) 307, 372
AspLEI GCGC 3 cut(s) 341, 343, 495
AspS9I GGNCC 3 cut(s) 220, 439, 642
AsuC2I CCSGG 1 cut(s) 345
AvaII GGWCC 2 cut(s) 220, 439
BanII GRGCYC 2 cut(s) 193, 360
Bbv12I GWGCWC 2 cut(s) 193, 360
BccI CCATC 3 cut(s) 104, 429, 534
BceAI ACGGC 3 cut(s) 44, 187, 352
BcnI CCSGG 1 cut(s) 345
BfaI CTAG 2 cut(s) 326, 579
BglI GCCNNNNNGGC 1 cut(s) 570
BisI GCNGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 661
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 2 cut(s) 220, 439
BmgT120I GGNCC 3 cut(s) 220, 439, 642
BmiI GGNNCC 3 cut(s) 123, 440, 643
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 171, 445
BpuMI CCSGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 229, 651
Bse118I RCCGGY 1 cut(s) 174
Bse1I ACTGG 2 cut(s) 223, 244
BseGI GGATG 4 cut(s) 115, 440, 460, 613
BseLI CCNNNNNNNGG 3 cut(s) 206, 229, 651
BseMII CTCAG 1 cut(s) 574
BseNI ACTGG 2 cut(s) 223, 244
BsePI GCGCGC 1 cut(s) 339
BseX3I CGGCCG 2 cut(s) 57, 172
Bsh1236I CGCG 2 cut(s) 341, 493
Bsh1285I CGRYCG 3 cut(s) 30, 60, 175
BshFI GGCC 4 cut(s) 59, 174, 573, 644
BsiEI CGRYCG 3 cut(s) 30, 60, 175
BsiHKAI GWGCWC 2 cut(s) 193, 360
BsiSI CCGG 2 cut(s) 175, 344
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 3 cut(s) 206, 229, 651
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 4 cut(s) 59, 174, 573, 644
Bsp1286I GDGCHC 2 cut(s) 193, 360
Bsp143I GATC 4 cut(s) 27, 34, 92, 274
BspACI CCGC 3 cut(s) 157, 200, 442
BspANI GGCC 4 cut(s) 59, 174, 573, 644
BspCNI CTCAG 1 cut(s) 573
BspFNI CGCG 2 cut(s) 341, 493
BspLI GGNNCC 3 cut(s) 123, 440, 643
BspPI GGATC 2 cut(s) 100, 282
BsrFI RCCGGY 1 cut(s) 174
BsrI ACTGG 2 cut(s) 223, 244
BssAI RCCGGY 1 cut(s) 174
BssHII GCGCGC 1 cut(s) 339
BssMI GATC 4 cut(s) 27, 34, 92, 274
Bst4CI ACNGT 2 cut(s) 289, 394
Bst6I CTCTTC 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 341, 571
BstDEI CTNAG 1 cut(s) 560
BstF5I GGATG 4 cut(s) 115, 440, 460, 613
BstFNI CGCG 2 cut(s) 341, 493
BstHHI GCGC 3 cut(s) 341, 343, 495
BstKTI GATC 4 cut(s) 30, 37, 95, 277
BstMBI GATC 4 cut(s) 27, 34, 92, 274
BstMCI CGRYCG 3 cut(s) 30, 60, 175
BstMWI GCNNNNNNNGC 5 cut(s) 322, 338, 345, 570, 641
BstSCI CCNGG 1 cut(s) 343
BstUI CGCG 2 cut(s) 341, 493
BstZI CGGCCG 2 cut(s) 57, 172
BsuRI GGCC 4 cut(s) 59, 174, 573, 644
BtsCI GGATG 4 cut(s) 115, 440, 460, 613
Cac8I GCNNGC 2 cut(s) 341, 571
CfoI GCGC 3 cut(s) 341, 343, 495
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 3 cut(s) 220, 439, 642
Csp6I GTAC 1 cut(s) 152
CviAII CATG 3 cut(s) 7, 259, 400
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 560
DpnI GATC 4 cut(s) 29, 36, 94, 276
DpnII GATC 4 cut(s) 27, 34, 92, 274
EaeI YGGCCR 2 cut(s) 57, 172
EagI CGGCCG 2 cut(s) 57, 172
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Ecl136II GAGCTC 2 cut(s) 191, 358
EclXI CGGCCG 2 cut(s) 57, 172
Eco147I AGGCCT 1 cut(s) 573
Eco24I GRGCYC 2 cut(s) 193, 360
Eco47I GGWCC 2 cut(s) 220, 439
Eco52I CGGCCG 2 cut(s) 57, 172
Eco53kI GAGCTC 2 cut(s) 191, 358
EcoICRI GAGCTC 2 cut(s) 191, 358
EcoT38I GRGCYC 2 cut(s) 193, 360
FaeI CATG 3 cut(s) 10, 262, 403
FaiI YATR 5 cut(s) 8, 132, 141, 260, 401
FaqI GGGAC 1 cut(s) 452
FatI CATG 3 cut(s) 6, 258, 399
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 660
FokI GGATG 4 cut(s) 122, 447, 467, 620
FriOI GRGCYC 2 cut(s) 193, 360
Fsp4HI GCNGC 1 cut(s) 660
FspBI CTAG 2 cut(s) 326, 579
GlaI GCGC 3 cut(s) 340, 342, 494
GluI GCNGC 1 cut(s) 660
HaeIII GGCC 4 cut(s) 59, 174, 573, 644
HapII CCGG 2 cut(s) 175, 344
HhaI GCGC 3 cut(s) 341, 343, 495
Hin1II CATG 3 cut(s) 10, 262, 403
Hin6I GCGC 3 cut(s) 339, 341, 493
HinP1I GCGC 3 cut(s) 339, 341, 493
HincII GTYRAC 3 cut(s) 76, 169, 420
HindII GTYRAC 3 cut(s) 76, 169, 420
HinfI GANTC 3 cut(s) 251, 470, 544
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 2 cut(s) 175, 344
Hpy166II GTNNAC 7 cut(s) 76, 105, 154, 169, 220, 397, 420
Hpy188I TCNGA 5 cut(s) 97, 188, 265, 279, 668
Hpy188III TCNNGA 3 cut(s) 432, 535, 579
Hpy8I GTNNAC 7 cut(s) 76, 105, 154, 169, 220, 397, 420
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 4, 265
HpyCH4III ACNGT 2 cut(s) 289, 394
HpyCH4V TGCA 2 cut(s) 4, 458
HpyF10VI GCNNNNNNNGC 5 cut(s) 322, 338, 345, 570, 641
HpyF3I CTNAG 1 cut(s) 560
Hsp92II CATG 3 cut(s) 10, 262, 403
HspAI GCGC 3 cut(s) 339, 341, 493
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 4 cut(s) 27, 34, 92, 274
LmnI GCTCC 3 cut(s) 188, 196, 363
LpnPI CCDG 8 cut(s) 188, 225, 236, 357, 390, 417, 444, 555
LweI GCATC 2 cut(s) 171, 445
MaeI CTAG 2 cut(s) 326, 579
MaeIII GTNAC 2 cut(s) 283, 317
MalI GATC 4 cut(s) 29, 36, 94, 276
MboI GATC 4 cut(s) 27, 34, 92, 274
MboII GAAGA 3 cut(s) 315, 635, 638
MhlI GDGCHC 2 cut(s) 193, 360
MluCI AATT 1 cut(s) 372
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 3 cut(s) 243, 368, 444
MnlI CCTC 2 cut(s) 299, 625
MroXI GAANNNNTTC 2 cut(s) 307, 372
MseI TTAA 1 cut(s) 168
MspI CCGG 2 cut(s) 175, 344
MspR9I CCNGG 1 cut(s) 345
MvnI CGCG 2 cut(s) 341, 493
MwoI GCNNNNNNNGC 5 cut(s) 322, 338, 345, 570, 641
NciI CCSGG 1 cut(s) 345
NdeII GATC 4 cut(s) 27, 34, 92, 274
NlaIII CATG 3 cut(s) 10, 262, 403
NlaIV GGNNCC 3 cut(s) 123, 440, 643
NmuCI GTSAC 1 cut(s) 317
PalAI GGCGCGCC 1 cut(s) 339
PauI GCGCGC 1 cut(s) 339
PceI AGGCCT 1 cut(s) 573
PdmI GAANNNNTTC 2 cut(s) 307, 372
PfeI GAWTC 2 cut(s) 470, 544
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 1 cut(s) 661
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp124BI GAGCTC 2 cut(s) 193, 360
PspN4I GGNNCC 3 cut(s) 123, 440, 643
PspPI GGNCC 3 cut(s) 220, 439, 642
PteI GCGCGC 1 cut(s) 339
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacI GAGCTC 2 cut(s) 193, 360
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 4 cut(s) 27, 34, 92, 274
Sau96I GGNCC 3 cut(s) 220, 439, 642
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 2 cut(s) 193, 360
SetI ASST 5 cut(s) 193, 310, 327, 360, 664
SfaNI GCATC 2 cut(s) 171, 445
SgsI GGCGCGCC 1 cut(s) 339
SinI GGWCC 2 cut(s) 220, 439
Sse9I AATT 1 cut(s) 372
SseBI AGGCCT 1 cut(s) 573
SsiI CCGC 3 cut(s) 157, 200, 442
SspMI CTAG 2 cut(s) 326, 579
SstI GAGCTC 2 cut(s) 193, 360
StuI AGGCCT 1 cut(s) 573
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 289, 394
TaqI TCGA 3 cut(s) 75, 162, 502
TasI AATT 1 cut(s) 372
TfiI GAWTC 2 cut(s) 470, 544
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 4 cut(s) 23, 136, 247, 624
TspGWI ACGGA 5 cut(s) 63, 122, 350, 366, 467
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 220, 439
XbaI TCTAGA 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 2 cut(s) 307, 372
XspI CTAG 2 cut(s) 326, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.