Rh7CG346700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000124
Physical Location & Seq
Forward (+)
39179099 .. 39181619
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG346700.1

Sequence Viewer

Length: 894 bp
ATGGATCATCACCTAGACGTCAACCACCCATACTTCTCCGTGATCGTTCGGTTGCTGACTCAGAACGTGGAAAAGGCGAAAATTCCTCCGGCGTTTATGGAGAGGCACATGAAGGACTTTAACCGGATAGGCGTCCAACTAACTTTGACCGGACTGCGTGGGGTTCCGTACCACATCGGCCTGACAGCACAAGGGGATCACCGCTGGATGCACGGAAATCAGGAGTCCTTCATCGAGAAGATTCATAACCACGAACGGATGATGGTGTTGCCCGCCATCCCACGGGGTCGCCCATACTCTGCCATCTGCAATGATGGCGGTCCAGGACCTAGTCTCTTAAGGTGGGATTCAAGGGAGGGGTTGATATTCTGGCATGTTGAGATGACTCAAGGAGTAGGTTGCATGACTTTTGGTCAAGGCTGGAACAGATTTGCTGCCCACAATCGGTTGGTTGATGGAAAGCGCTTTTGTGTCTTCACTTACAGGGGTGGCCTTGAGTTCTCTGTCCTTGTTTTCCAAAAACGGAGGGGTACCTTGATGATGAAGAGGGGGCCGATTTGGGGGCTGCTAATAATGGGCCTATGTATGAGGAGGTTGTCTGTGGCTACCAACGCATCTGTTATTGTGATGTTAGGATTTAGCAAGGTCATGGAGCGTTTCTCACAAATGATGCTCGTTCTCTGCTTCCTAGAAAGGGTAACGCATGTGTTAAGCTGCAAAGGTCATACGGAGCCTTGTGGGATATCGGGGTCGCGCCTAGCAACGACACTCACTTCCTCACCAGGGGCTACAGTAAATTCAAGGAGGCAAATGGACTTCGTAGGGTTCAGCTGCTCCGACTGTATATCGTCTCAAGACGAAGGATTTGATCATCTAGTTTCTTGTGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

33.48

Weight (kDa)

9.31

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 21
Acc65I GGTACC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 530
AccII CGCG 1 cut(s) 754
AciI CCGC 3 cut(s) 202, 273, 318
AclWI GGATC 2 cut(s) 12, 204
AcsI RAATTY 2 cut(s) 81, 796
AcyI GRCGYC 2 cut(s) 18, 132
AfaI GTAC 2 cut(s) 170, 532
AfeI AGCGCT 1 cut(s) 464
AfiI CCNNNNNNNGG 5 cut(s) 282, 444, 560, 694, 783
AflII CTTAAG 1 cut(s) 337
AgsI TTSAA 2 cut(s) 351, 801
AhdI GACNNNNNGTC 1 cut(s) 411
AjnI CCWGG 2 cut(s) 322, 781
AluBI AGCT 2 cut(s) 714, 831
AluI AGCT 2 cut(s) 714, 831
Alw26I GTCTC 2 cut(s) 338, 855
AlwI GGATC 2 cut(s) 12, 204
Aor51HI AGCGCT 1 cut(s) 464
AoxI GGCC 4 cut(s) 178, 490, 551, 577
ApeKI GCWGC 4 cut(s) 434, 565, 714, 831
ApoI RAATTY 2 cut(s) 81, 796
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
Asp718I GGTACC 1 cut(s) 530
AspLEI GCGC 2 cut(s) 465, 756
AspS9I GGNCC 4 cut(s) 320, 326, 551, 577
AsuHPI GGTGA 2 cut(s) 191, 771
AvaII GGWCC 2 cut(s) 320, 326
BanI GGYRCC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 4 cut(s) 421, 552, 701, 818
BccI CCATC 5 cut(s) 256, 284, 308, 311, 449
BciT130I CCWGG 2 cut(s) 324, 783
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 2 cut(s) 338, 855
BfaI CTAG 5 cut(s) 14, 330, 689, 758, 875
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 1 cut(s) 466
BfrI CTTAAG 1 cut(s) 337
BisI GCNGC 4 cut(s) 435, 566, 715, 832
BlsI GCNGC 4 cut(s) 436, 567, 716, 833
Bme1390I CCNGG 2 cut(s) 324, 783
Bme18I GGWCC 2 cut(s) 320, 326
BmeRI GACNNNNNGTC 1 cut(s) 411
BmgT120I GGNCC 4 cut(s) 320, 326, 551, 577
BmiI GGNNCC 4 cut(s) 165, 532, 552, 732
BmrFI CCNGG 2 cut(s) 324, 783
BmsI GCATC 3 cut(s) 198, 623, 660
BpiI GAAGAC 1 cut(s) 466
BplI GAGNNNNNCTC 2 cut(s) 644, 676
BpuEI CTTGAG 3 cut(s) 372, 515, 837
BsaHI GRCGYC 2 cut(s) 18, 132
BsaJI CCNNGG 2 cut(s) 281, 782
BsaWI WCCGGW 2 cut(s) 123, 149
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 444, 560, 694, 783
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 2 cut(s) 324, 783
BseDI CCNNGG 2 cut(s) 281, 782
BseGI GGATG 3 cut(s) 213, 264, 276
BseLI CCNNNNNNNGG 5 cut(s) 282, 444, 560, 694, 783
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 604
BseXI GCAGC 4 cut(s) 421, 552, 701, 818
Bsh1236I CGCG 1 cut(s) 754
BshFI GGCC 4 cut(s) 180, 492, 553, 579
BshNI GGYRCC 1 cut(s) 530
BsiSI CCGG 3 cut(s) 89, 124, 150
BslI CCNNNNNNNGG 5 cut(s) 282, 444, 560, 694, 783
BsmAI GTCTC 2 cut(s) 338, 855
BsmBI CGTCTC 1 cut(s) 855
BsnI GGCC 4 cut(s) 180, 492, 553, 579
Bsp143I GATC 4 cut(s) 4, 42, 196, 868
BspACI CCGC 3 cut(s) 202, 273, 318
BspANI GGCC 4 cut(s) 180, 492, 553, 579
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 754
BspLI GGNNCC 4 cut(s) 165, 532, 552, 732
BspPI GGATC 2 cut(s) 12, 204
BspT107I GGYRCC 1 cut(s) 530
BspTI CTTAAG 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 281, 782
BssMI GATC 4 cut(s) 4, 42, 196, 868
BssNI GRCGYC 2 cut(s) 18, 132
Bst2UI CCWGG 2 cut(s) 324, 783
Bst4CI ACNGT 2 cut(s) 793, 842
Bst6I CTCTTC 1 cut(s) 539
BstACI GRCGYC 2 cut(s) 18, 132
BstAFI CTTAAG 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 3 cut(s) 213, 264, 276
BstFNI CGCG 1 cut(s) 754
BstH2I RGCGCY 1 cut(s) 466
BstHHI GCGC 2 cut(s) 465, 756
BstKTI GATC 4 cut(s) 7, 45, 199, 871
BstMAI GTCTC 2 cut(s) 338, 855
BstMBI GATC 4 cut(s) 4, 42, 196, 868
BstMWI GCNNNNNNNGC 2 cut(s) 315, 611
BstNI CCWGG 2 cut(s) 324, 783
BstNSI RCATGY 2 cut(s) 377, 707
BstSCI CCNGG 2 cut(s) 322, 781
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 1 cut(s) 754
BstV1I GCAGC 4 cut(s) 421, 552, 701, 818
BstV2I GAAGAC 1 cut(s) 466
BsuRI GGCC 4 cut(s) 180, 492, 553, 579
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 3 cut(s) 213, 264, 276
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 2 cut(s) 465, 756
Cfr13I GGNCC 4 cut(s) 320, 326, 551, 577
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 169, 531
CviAII CATG 5 cut(s) 109, 374, 403, 649, 704
CviQI GTAC 2 cut(s) 169, 531
DdeI CTNAG 1 cut(s) 60
DpnI GATC 4 cut(s) 6, 44, 198, 870
DpnII GATC 4 cut(s) 4, 42, 196, 868
DriI GACNNNNNGTC 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 539
Eam1105I GACNNNNNGTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 744
Eco47I GGWCC 2 cut(s) 320, 326
Eco47III AGCGCT 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 322, 781
EcoRV GATATC 1 cut(s) 744
Esp3I CGTCTC 1 cut(s) 855
FaeI CATG 5 cut(s) 112, 377, 406, 652, 707
FatI CATG 5 cut(s) 108, 373, 402, 648, 703
FauI CCCGC 1 cut(s) 280
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 4 cut(s) 435, 566, 715, 832
FokI GGATG 3 cut(s) 220, 263, 271
Fsp4HI GCNGC 4 cut(s) 435, 566, 715, 832
FspBI CTAG 5 cut(s) 14, 330, 689, 758, 875
GlaI GCGC 2 cut(s) 464, 755
GluI GCNGC 4 cut(s) 435, 566, 715, 832
HaeII RGCGCY 1 cut(s) 466
HaeIII GGCC 4 cut(s) 180, 492, 553, 579
HapII CCGG 3 cut(s) 89, 124, 150
HgaI GACGC 1 cut(s) 121
HhaI GCGC 2 cut(s) 465, 756
Hin1I GRCGYC 2 cut(s) 18, 132
Hin1II CATG 5 cut(s) 112, 377, 406, 652, 707
Hin6I GCGC 2 cut(s) 463, 754
HinP1I GCGC 2 cut(s) 463, 754
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 5 cut(s) 58, 224, 241, 347, 385
HpaII CCGG 3 cut(s) 89, 124, 150
HphI GGTGA 2 cut(s) 191, 771
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 63, 838
Hpy188III TCNNGA 3 cut(s) 221, 235, 854
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 106, 238, 854
HpyCH4III ACNGT 2 cut(s) 793, 842
HpyCH4IV ACGT 2 cut(s) 18, 66
HpyCH4V TGCA 4 cut(s) 211, 309, 402, 717
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 611
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 2 cut(s) 18, 66
Hsp92I GRCGYC 2 cut(s) 18, 132
Hsp92II CATG 5 cut(s) 112, 377, 406, 652, 707
HspAI GCGC 2 cut(s) 463, 754
KpnI GGTACC 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 4 cut(s) 4, 42, 196, 868
LmnI GCTCC 3 cut(s) 652, 730, 839
Lsp1109I GCAGC 4 cut(s) 421, 552, 701, 818
LweI GCATC 3 cut(s) 198, 623, 660
MaeI CTAG 5 cut(s) 14, 330, 689, 758, 875
MaeII ACGT 2 cut(s) 18, 66
MaeIII GTNAC 1 cut(s) 697
MalI GATC 4 cut(s) 6, 44, 198, 870
MboI GATC 4 cut(s) 4, 42, 196, 868
MboII GAAGA 3 cut(s) 250, 466, 556
MluCI AATT 2 cut(s) 81, 796
MlyI GAGTC 3 cut(s) 52, 233, 379
MmeI TCCRAC 2 cut(s) 160, 861
MnlI CCTC 9 cut(s) 96, 96, 349, 519, 540, 582, 585, 787, 798
MseI TTAA 3 cut(s) 120, 338, 710
MspA1I CMGCKG 2 cut(s) 204, 831
MspCI CTTAAG 1 cut(s) 337
MspI CCGG 3 cut(s) 89, 124, 150
MspR9I CCNGG 2 cut(s) 324, 783
MvaI CCWGG 2 cut(s) 324, 783
MvnI CGCG 1 cut(s) 754
MwoI GCNNNNNNNGC 2 cut(s) 315, 611
NdeII GATC 4 cut(s) 4, 42, 196, 868
NlaIII CATG 5 cut(s) 112, 377, 406, 652, 707
NlaIV GGNNCC 4 cut(s) 165, 532, 552, 732
NspI RCATGY 2 cut(s) 377, 707
PfeI GAWTC 2 cut(s) 241, 347
PflFI GACNNNGTC 1 cut(s) 330
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 4 cut(s) 436, 567, 716, 833
PleI GAGTC 3 cut(s) 52, 232, 379
PpsI GAGTC 3 cut(s) 52, 232, 379
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 322, 781
PspGI CCWGG 2 cut(s) 322, 781
PspN4I GGNNCC 4 cut(s) 165, 532, 552, 732
PspPI GGNCC 4 cut(s) 320, 326, 551, 577
PspPPI RGGWCCY 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 330
PvuII CAGCTG 1 cut(s) 831
RsaI GTAC 2 cut(s) 170, 532
RsaNI GTAC 2 cut(s) 169, 531
SaqAI TTAA 3 cut(s) 120, 338, 710
SatI GCNGC 4 cut(s) 435, 566, 715, 832
Sau3AI GATC 4 cut(s) 4, 42, 196, 868
Sau96I GGNCC 4 cut(s) 320, 326, 551, 577
SchI GAGTC 3 cut(s) 52, 233, 379
ScrFI CCNGG 2 cut(s) 324, 783
SfaNI GCATC 3 cut(s) 198, 623, 660
SfcI CTRYAG 1 cut(s) 789
SinI GGWCC 2 cut(s) 320, 326
SmlI CTYRAG 4 cut(s) 337, 387, 494, 852
SmoI CTYRAG 4 cut(s) 337, 387, 494, 852
Sse9I AATT 2 cut(s) 81, 796
SsiI CCGC 3 cut(s) 202, 273, 318
SspMI CTAG 5 cut(s) 14, 330, 689, 758, 875
StyD4I CCNGG 2 cut(s) 322, 781
TaaI ACNGT 2 cut(s) 793, 842
TaiI ACGT 2 cut(s) 21, 69
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 81, 796
TfiI GAWTC 2 cut(s) 241, 347
Tru1I TTAA 3 cut(s) 120, 338, 710
Tru9I TTAA 3 cut(s) 120, 338, 710
TseI GCWGC 4 cut(s) 434, 565, 714, 831
TspDTI ATGAA 4 cut(s) 125, 220, 233, 557
TspGWI ACGGA 6 cut(s) 28, 156, 228, 271, 538, 743
Tth111I GACNNNGTC 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 337
VpaK11BI GGWCC 2 cut(s) 320, 326
XapI RAATTY 2 cut(s) 81, 796
XceI RCATGY 2 cut(s) 377, 707
XspI CTAG 5 cut(s) 14, 330, 689, 758, 875
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.