Rh5CG363700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000124
Physical Location & Seq
Reverse (-)
43734430 .. 43735974
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG363700.1

Sequence Viewer

Length: 648 bp
ATGTTCACTTATGCAGTGACCCGCAACGAGGACGTCAATCATGGGATTAGGATGGACTGCAATGGAGACGAGCAAACTAAAGCCAAATCTTGGATGCTACCAGGACCTTACATGTTGATGAACCCTATAGGGAATCACGACAATCTCCTCATCAATTACATCTTCATGGGTGGGAAAAAAGTCACGGTGGAGGAGGGAAGGTGGAATGTCATCAACTTTGTCGCAGAATGCTTGAACAAGGAGGGGAGTGGGGACTGGTTTTTACCTACTTACTTCTCGATGAGTCGTTATGTACTTCCGGAAAAGGCCAGTTCGTACAATGCAGGGGAGTCGTTTCGGGAATGGGTGGAGCACATAAGGACAGTGTGCAACCTTGATAGGTTCTACGGTTGCATGGAGAATTGCAAGAGGATGTTTTTGCCGATGCATGATGACAAGGCCAGGGGACATTGCTGCGCCATCTTCACCATTGCTTTTACTTTTGACAAGTTGAGGATGGAAGGGACCAACACTGACTTTGGGTTATTCAACTATGTTGAGCCTGTAGATGCATCGAAACAGGCAAATGGATTCGACTGTGGGGTTTATGTCATCCATAATATGATGCACTACCGGACCAATTGGCTGAAAGGGGTCAAGCTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.91

Weight (kDa)

6.38

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
AccB7I CCANNNNNTGG 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 2 cut(s) 294, 317
AfiI CCNNNNNNNGG 2 cut(s) 28, 90
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 2 cut(s) 235, 529
AjnI CCWGG 2 cut(s) 100, 440
AluBI AGCT 1 cut(s) 640
AluI AGCT 1 cut(s) 640
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 60
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 2 cut(s) 306, 438
ApeKI GCWGC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 3 cut(s) 104, 504, 615
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 3 cut(s) 104, 504, 615
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 440
BccI CCATC 3 cut(s) 46, 467, 490
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 2 cut(s) 102, 442
BcoDI GTCTC 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 126, 543
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
Bme1390I CCNGG 2 cut(s) 102, 442
Bme18I GGWCC 3 cut(s) 104, 504, 615
BmgT120I GGNCC 3 cut(s) 104, 504, 615
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 2 cut(s) 102, 442
BmsI GCATC 5 cut(s) 84, 414, 538, 560, 594
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 441
BsaWI WCCGGW 2 cut(s) 298, 612
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 90
Bse1I ACTGG 2 cut(s) 260, 309
Bse3DI GCAATG 3 cut(s) 67, 448, 468
BseAI TCCGGA 1 cut(s) 298
BseBI CCWGG 2 cut(s) 102, 442
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 5 cut(s) 57, 99, 417, 501, 591
BseLI CCNNNNNNNGG 2 cut(s) 28, 90
BseMI GCAATG 3 cut(s) 67, 448, 468
BseNI ACTGG 2 cut(s) 260, 309
BseRI GAGGAG 2 cut(s) 137, 206
BseXI GCAGC 1 cut(s) 440
BshFI GGCC 2 cut(s) 308, 440
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 2 cut(s) 299, 613
BslFI GGGAC 3 cut(s) 266, 459, 517
BslI CCNNNNNNNGG 2 cut(s) 28, 90
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsmFI GGGAC 3 cut(s) 266, 459, 517
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 2 cut(s) 308, 440
Bsp1286I GDGCHC 1 cut(s) 354
Bsp13I TCCGGA 1 cut(s) 298
BspACI CCGC 1 cut(s) 22
BspANI GGCC 2 cut(s) 308, 440
BspEI TCCGGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 505
BsrDI GCAATG 3 cut(s) 67, 448, 468
BsrI ACTGG 2 cut(s) 260, 309
BssECI CCNNGG 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 102, 442
Bst4CI ACNGT 4 cut(s) 187, 364, 389, 578
BstACI GRCGYC 1 cut(s) 33
BstF5I GGATG 5 cut(s) 57, 99, 417, 501, 591
BstHHI GCGC 1 cut(s) 458
BstMAI GTCTC 1 cut(s) 60
BstNI CCWGG 2 cut(s) 102, 442
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 100, 440
BstSFI CTRYAG 2 cut(s) 126, 543
BstV1I GCAGC 1 cut(s) 440
BsuRI GGCC 2 cut(s) 308, 440
BtsCI GGATG 5 cut(s) 57, 99, 417, 501, 591
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 369, 510
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 3 cut(s) 104, 504, 615
Csp6I GTAC 2 cut(s) 293, 316
CviAII CATG 5 cut(s) 41, 112, 166, 394, 428
CviJI RGCY 6 cut(s) 83, 308, 440, 541, 625, 640
CviKI_1 RGCY 6 cut(s) 83, 308, 440, 541, 625, 640
CviQI GTAC 2 cut(s) 293, 316
Eco47I GGWCC 3 cut(s) 104, 504, 615
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 2 cut(s) 100, 440
EcoT22I ATGCAT 2 cut(s) 429, 553
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 5 cut(s) 44, 115, 169, 397, 431
FaqI GGGAC 3 cut(s) 266, 459, 517
FatI CATG 5 cut(s) 40, 111, 165, 393, 427
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 5 cut(s) 64, 106, 424, 508, 578
Fsp4HI GCNGC 1 cut(s) 454
GlaI GCGC 1 cut(s) 457
GluI GCNGC 1 cut(s) 454
HaeIII GGCC 2 cut(s) 308, 440
HapII CCGG 2 cut(s) 299, 613
HhaI GCGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 5 cut(s) 44, 115, 169, 397, 431
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 4 cut(s) 133, 283, 329, 570
HpaII CCGG 2 cut(s) 299, 613
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 4 cut(s) 137, 277, 299, 338
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 192, 494
HpyCH4III ACNGT 4 cut(s) 187, 364, 389, 578
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 9 cut(s) 14, 60, 323, 369, 393, 405, 427, 551, 607
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 5 cut(s) 44, 115, 169, 397, 431
HspAI GCGC 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 298
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 5 cut(s) 84, 414, 538, 560, 594
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 16, 181
MboII GAAGA 2 cut(s) 154, 454
MfeI CAATTG 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 3 cut(s) 154, 400, 619
MlyI GAGTC 2 cut(s) 292, 338
MnlI CCTC 7 cut(s) 22, 158, 184, 187, 235, 402, 486
Mph1103I ATGCAT 2 cut(s) 429, 553
MroI TCCGGA 1 cut(s) 298
MseI TTAA 1 cut(s) 646
MslI CAYNNNNRTG 2 cut(s) 116, 164
MspI CCGG 2 cut(s) 299, 613
MspR9I CCNGG 2 cut(s) 102, 442
MunI CAATTG 1 cut(s) 619
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 2 cut(s) 102, 442
NlaIII CATG 5 cut(s) 44, 115, 169, 397, 431
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 16, 181
NsiI ATGCAT 2 cut(s) 429, 553
NspI RCATGY 1 cut(s) 115
PciI ACATGT 1 cut(s) 111
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 133, 570
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 1 cut(s) 455
PleI GAGTC 2 cut(s) 291, 337
PpsI GAGTC 2 cut(s) 291, 337
PpuMI RGGWCCY 1 cut(s) 104
PscI ACATGT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 100, 440
PspGI CCWGG 2 cut(s) 100, 440
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 3 cut(s) 104, 504, 615
PspPPI RGGWCCY 1 cut(s) 104
RsaI GTAC 2 cut(s) 294, 317
RsaNI GTAC 2 cut(s) 293, 316
RseI CAYNNNNRTG 2 cut(s) 116, 164
SaqAI TTAA 1 cut(s) 646
SatI GCNGC 1 cut(s) 454
Sau96I GGNCC 3 cut(s) 104, 504, 615
SchI GAGTC 2 cut(s) 292, 338
ScrFI CCNGG 2 cut(s) 102, 442
SduI GDGCHC 1 cut(s) 354
SetI ASST 7 cut(s) 36, 109, 203, 268, 375, 383, 642
SfaNI GCATC 5 cut(s) 84, 414, 538, 560, 594
SfcI CTRYAG 2 cut(s) 126, 543
SinI GGWCC 3 cut(s) 104, 504, 615
SmiMI CAYNNNNRTG 2 cut(s) 116, 164
Sse9I AATT 3 cut(s) 154, 400, 619
SsiI CCGC 1 cut(s) 22
StyD4I CCNGG 2 cut(s) 100, 440
TaaI ACNGT 4 cut(s) 187, 364, 389, 578
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 278, 554, 573
TasI AATT 3 cut(s) 154, 400, 619
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 2 cut(s) 133, 570
Tru1I TTAA 1 cut(s) 646
Tru9I TTAA 1 cut(s) 646
TscAI CASTG 3 cut(s) 21, 369, 517
TseFI GTSAC 2 cut(s) 16, 181
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 2 cut(s) 16, 181
TspDTI ATGAA 2 cut(s) 134, 154
TspRI CASTG 3 cut(s) 21, 369, 517
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 3 cut(s) 104, 504, 615
XceI RCATGY 1 cut(s) 115
ZraI GACGTC 1 cut(s) 34
Zsp2I ATGCAT 2 cut(s) 429, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.