Rw1G010430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000124
Physical Location & Seq
Reverse (-)
23352539 .. 23354633
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010430.1

Sequence Viewer

Length: 813 bp
ATGTTGGGTAGCGCGCCCAGTTTCGAAAGTGGACTGTTCCATCTCACTGTAGGGGATACGTGGCCGACGGATCTTCTGTCTATTGGCAACGTTCCTTCTGGAAATGAAATTGTTCATCATTCGACATCCAACCGCTGGTGTAGAAAGGGTCTATTGTCGTCGTCTCCACGGTTCAAAGCATTTACAAACTATATCTTCACATATGCTGATGAAGGTAGAACATCCTCCTCCTCTGATGAGGCCACATTTCCAAGTAATAGAACAATTGTTGCATCATGGGGGAATAAGAGGGCTCTGCTGTACCGAGATGAAATCTCCTGCTTCGGACCTGTCAAATTTGCGGCCAGCTTTTGTTGTCGCTATGTTTGCTGTATATGTAACACCTTTAATCGATTCTCATCATTAGGAGAAGGCAACCACGTATGGCGAAGGGGATTCGTACTTTCGGGATTGTACGGAAACTGCGCCATCTTCACCATTGGCTTCGACTTTGAGAAGCTGAGGCTGAAAGGTGGCACTAACTTTGGGATGTTCGATCATGTTCTTGCTAACAATGTTCCAACCCAGACAAATGGAGTTGATTGTGGCGTATTCGTCATCCACACCATGATGGACTTTAAGACTAAGTGGACTGAAGGGGATCCAAATGACATATTGGGAACCGCTGGATGCGATGCCATTGATTTGGCTAAGGTAGAAGAGGTGGGTGCTGGGTTGGGTGTTGGTGAAGATGGGTTACAGAGCTTGACAAGAGGGAAGGATTATGTGACGGTCAAGGGGAATAAACGATCTCACCAACTCTTTTCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.61

Weight (kDa)

7.05

Isoelectric Point (pI)

27.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 135
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 133, 341, 663
AclI AACGTT 1 cut(s) 90
AclWI GGATC 3 cut(s) 78, 635, 648
AcoI YGGCCR 2 cut(s) 62, 342
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 3 cut(s) 302, 441, 455
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 3 cut(s) 348, 499, 744
AluI AGCT 3 cut(s) 348, 499, 744
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 3 cut(s) 78, 635, 648
AoxI GGCC 3 cut(s) 62, 240, 342
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 3 cut(s) 14, 16, 467
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 466, 737, 785
AsuII TTCGAA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 326
BamHI GGATCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 295
BarI GAAGNNNNNNTAC 2 cut(s) 720, 752
BbvCI CCTCAGC 1 cut(s) 500
BccI CCATC 4 cut(s) 48, 476, 604, 725
BciVI GTATCC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 48
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 642, 661
BmrI ACTGGG 1 cut(s) 12
BmsI GCATC 3 cut(s) 281, 659, 664
BmuI ACTGGG 1 cut(s) 12
Bpu10I CCTNAGC 2 cut(s) 500, 690
Bpu14I TTCGAA 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 391
BsaAI YACGTR 2 cut(s) 60, 421
BsaBI GATNNNNATC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 397
BseCI ATCGAT 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 5 cut(s) 125, 221, 534, 597, 674
BseJI GATNNNNATC 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 1 cut(s) 18
BsePI GCGCGC 1 cut(s) 12
BseRI GAGGAG 2 cut(s) 217, 220
BseYI CCCAGC 1 cut(s) 710
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 64, 242, 344
BshVI ATCGAT 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsnI GGCC 3 cut(s) 64, 242, 344
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 4 cut(s) 70, 535, 640, 788
BspACI CCGC 3 cut(s) 133, 341, 663
BspANI GGCC 3 cut(s) 64, 242, 344
BspCNI CTCAG 1 cut(s) 492
BspDI ATCGAT 1 cut(s) 391
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 642, 661
BspPI GGATC 3 cut(s) 78, 635, 648
BspT104I TTCGAA 1 cut(s) 24
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 167
BssHII GCGCGC 1 cut(s) 12
BssMI GATC 4 cut(s) 70, 535, 640, 788
Bst4CI ACNGT 4 cut(s) 36, 49, 171, 772
Bst6I CTCTTC 1 cut(s) 693
BstBAI YACGTR 2 cut(s) 60, 421
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 14, 346
BstDEI CTNAG 3 cut(s) 500, 624, 690
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 5 cut(s) 125, 221, 534, 597, 674
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 3 cut(s) 14, 16, 467
BstKTI GATC 4 cut(s) 73, 538, 643, 791
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 4 cut(s) 70, 535, 640, 788
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 70, 640
BstXI CCANNNNNNTGG 2 cut(s) 572, 685
BstYI RGATCY 2 cut(s) 70, 640
Bsu15I ATCGAT 1 cut(s) 391
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 3 cut(s) 64, 242, 344
BsuTUI ATCGAT 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 687
BtsCI GGATG 5 cut(s) 125, 221, 534, 597, 674
BtsIMutI CAGTG 2 cut(s) 45, 808
Cac8I GCNNGC 2 cut(s) 14, 346
CfoI GCGC 3 cut(s) 14, 16, 467
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 391
Csp6I GTAC 3 cut(s) 301, 440, 454
CviAII CATG 3 cut(s) 276, 539, 607
CviQI GTAC 3 cut(s) 301, 440, 454
DdeI CTNAG 3 cut(s) 500, 624, 690
DpnI GATC 4 cut(s) 72, 537, 642, 790
DpnII GATC 4 cut(s) 70, 535, 640, 788
EaeI YGGCCR 2 cut(s) 62, 342
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 654
EcoT38I GRGCYC 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 3 cut(s) 279, 542, 610
FatI CATG 3 cut(s) 275, 538, 606
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 5 cut(s) 112, 208, 541, 584, 681
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 342
GlaI GCGC 3 cut(s) 13, 15, 466
GluI GCNGC 1 cut(s) 342
GsaI CCCAGC 1 cut(s) 714
HaeIII GGCC 3 cut(s) 64, 242, 344
HhaI GCGC 3 cut(s) 14, 16, 467
Hin1II CATG 3 cut(s) 279, 542, 610
Hin6I GCGC 3 cut(s) 12, 14, 465
HinP1I GCGC 3 cut(s) 12, 14, 465
HinfI GANTC 2 cut(s) 393, 435
HphI GGTGA 3 cut(s) 466, 737, 785
Hpy166II GTNNAC 2 cut(s) 32, 630
Hpy188I TCNGA 2 cut(s) 235, 326
Hpy188III TCNNGA 2 cut(s) 99, 447
Hpy8I GTNNAC 2 cut(s) 32, 630
Hpy99I CGWCG 2 cut(s) 70, 163
HpyAV CCTTC 6 cut(s) 105, 206, 404, 423, 629, 751
HpyCH4III ACNGT 4 cut(s) 36, 49, 171, 772
HpyCH4IV ACGT 3 cut(s) 59, 90, 420
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 3 cut(s) 500, 624, 690
HpySE526I ACGT 3 cut(s) 59, 90, 420
Hsp92II CATG 3 cut(s) 279, 542, 610
HspAI GCGC 3 cut(s) 12, 14, 465
Kzo9I GATC 4 cut(s) 70, 535, 640, 788
LpnPI CCDG 9 cut(s) 31, 84, 121, 331, 342, 358, 578, 651, 696
LweI GCATC 3 cut(s) 281, 659, 664
MaeII ACGT 3 cut(s) 59, 90, 420
MaeIII GTNAC 3 cut(s) 377, 735, 766
MalI GATC 4 cut(s) 72, 537, 642, 790
MboI GATC 4 cut(s) 70, 535, 640, 788
MboII GAAGA 5 cut(s) 65, 187, 463, 710, 740
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 2 cut(s) 70, 640
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 3 cut(s) 108, 264, 335
MmeI TCCRAC 2 cut(s) 153, 584
MnlI CCTC 8 cut(s) 232, 235, 238, 241, 282, 495, 694, 746
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 2 cut(s) 387, 618
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 2 cut(s) 135, 665
MunI CAATTG 1 cut(s) 264
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 366
NdeI CATATG 1 cut(s) 202
NdeII GATC 4 cut(s) 70, 535, 640, 788
NlaIII CATG 3 cut(s) 279, 542, 610
NlaIV GGNNCC 2 cut(s) 642, 661
NmuCI GTSAC 1 cut(s) 766
NspV TTCGAA 1 cut(s) 24
PauI GCGCGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 393, 435
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 1 cut(s) 343
Ppu21I YACGTR 2 cut(s) 60, 421
Psp1406I AACGTT 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 642, 661
PspPI GGNCC 1 cut(s) 326
PsuI RGATCY 2 cut(s) 70, 640
PteI GCGCGC 1 cut(s) 12
RsaI GTAC 3 cut(s) 302, 441, 455
RsaNI GTAC 3 cut(s) 301, 440, 454
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 2 cut(s) 387, 618
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 4 cut(s) 70, 535, 640, 788
Sau96I GGNCC 1 cut(s) 326
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 3 cut(s) 281, 659, 664
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 24
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 608
Sse9I AATT 3 cut(s) 108, 264, 335
SsiI CCGC 3 cut(s) 133, 341, 663
TaaI ACNGT 4 cut(s) 36, 49, 171, 772
TaiI ACGT 3 cut(s) 62, 93, 423
TaqI TCGA 5 cut(s) 24, 122, 391, 486, 534
TasI AATT 3 cut(s) 108, 264, 335
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 393, 435
Tru1I TTAA 2 cut(s) 387, 618
Tru9I TTAA 2 cut(s) 387, 618
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 766
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 4 cut(s) 104, 120, 225, 324
TspGWI ACGGA 2 cut(s) 83, 471
TspRI CASTG 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.