Rh2BG336800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000124
Physical Location & Seq
Reverse (-)
44478618 .. 44479292
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG336800.1

Sequence Viewer

Length: 480 bp
ATGTGCACGACGTCGCTGCAATACACCCAAGCTCCAGCTGTGCCCCCACATTTTAGGGGTAATGAGCACATGCAGGGTAATGAGGAGCCTGAGGAGGACCATATGGATGCGGATGGGGCACAGGGGGAAGAAGACGAGGAACGGATCCCGGATCAGGATGTTGAAGATGAAGACGAGGAACCTCATATGGAACGGGTGAACCCAGGATGGCGTACTTCCAGGTCGGACAAATGCACAATTCAAAGATGTCACTGTTATCTGCCGGCCAAGTTTGCTCATGCCACATTTCCCAGAGGAGCAGCTGTGAATATAAAGGTCCAGAAATCAGATGGATGTGTCTGGAGGATGAAAGTCGTCCCATCCAATACCACTCACTACCTAAGTGCTGGGTACACCAATTTCAGGGAGGATCTGAAACTGCCCATAGGGTCCACAATCGAGCTCCATGTGGTTGATCGGAACAGACTAGTGTTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.17

Weight (kDa)

5.05

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 80 - 154 6e-07 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AciI CCGC 1 cut(s) 110
AclWI GGATC 4 cut(s) 139, 152, 159, 417
AcoI YGGCCR 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 214, 392
AfiI CCNNNNNNNGG 2 cut(s) 154, 402
AgsI TTSAA 2 cut(s) 164, 242
AhlI ACTAGT 1 cut(s) 466
AjnI CCWGG 2 cut(s) 202, 218
AluBI AGCT 4 cut(s) 32, 38, 302, 442
AluI AGCT 4 cut(s) 32, 38, 302, 442
Alw21I GWGCWC 3 cut(s) 8, 69, 444
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 4 cut(s) 139, 152, 159, 417
AoxI GGCC 1 cut(s) 264
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 2 cut(s) 16, 299
AspS9I GGNCC 3 cut(s) 97, 316, 429
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 3 cut(s) 97, 316, 429
AxyI CCTNAGG 1 cut(s) 90
BaeGI GKGCMC 3 cut(s) 8, 45, 121
BamHI GGATCC 1 cut(s) 144
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 138, 177
Bbv12I GWGCWC 3 cut(s) 8, 69, 444
BbvI GCAGC 2 cut(s) 3, 311
BccI CCATC 4 cut(s) 107, 201, 323, 367
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 204, 220
BcnI CCSGG 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 1 cut(s) 467
BisI GCNGC 2 cut(s) 17, 300
BlsI GCNGC 2 cut(s) 18, 301
Bme1390I CCNGG 3 cut(s) 149, 204, 220
Bme18I GGWCC 3 cut(s) 97, 316, 429
BmgT120I GGNCC 3 cut(s) 97, 316, 429
BmiI GGNNCC 4 cut(s) 87, 146, 180, 430
BmrFI CCNGG 3 cut(s) 149, 204, 220
BmsI GCATC 1 cut(s) 97
BpiI GAAGAC 2 cut(s) 138, 177
BpmI CTGGAG 2 cut(s) 18, 361
BpuMI CCSGG 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 202
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 402
Bse118I RCCGGY 1 cut(s) 262
Bse21I CCTNAGG 1 cut(s) 90
BseBI CCWGG 2 cut(s) 204, 220
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 7 cut(s) 112, 118, 163, 212, 338, 351, 359
BseLI CCNNNNNNNGG 2 cut(s) 154, 402
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 3 cut(s) 98, 107, 309
BseSI GKGCMC 3 cut(s) 8, 45, 121
BseXI GCAGC 2 cut(s) 3, 311
BseYI CCCAGC 1 cut(s) 386
BshFI GGCC 1 cut(s) 266
BsiHKAI GWGCWC 3 cut(s) 8, 69, 444
BsiSI CCGG 2 cut(s) 149, 263
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 154, 402
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 266
Bsp1286I GDGCHC 5 cut(s) 8, 45, 69, 121, 444
Bsp143I GATC 4 cut(s) 144, 151, 409, 454
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 4 cut(s) 87, 146, 180, 430
BspPI GGATC 4 cut(s) 139, 152, 159, 417
BsrFI RCCGGY 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 4 cut(s) 144, 151, 409, 454
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 204, 220
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 90, 380
BstF5I GGATG 7 cut(s) 112, 118, 163, 212, 338, 351, 359
BstKTI GATC 4 cut(s) 147, 154, 412, 457
BstMBI GATC 4 cut(s) 144, 151, 409, 454
BstMWI GCNNNNNNNGC 2 cut(s) 116, 272
BstNI CCWGG 2 cut(s) 204, 220
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 147, 202, 218
BstSLI GKGCMC 3 cut(s) 8, 45, 121
BstV1I GCAGC 2 cut(s) 3, 311
BstV2I GAAGAC 2 cut(s) 138, 177
BstX2I RGATCY 2 cut(s) 144, 409
BstYI RGATCY 2 cut(s) 144, 409
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 7 cut(s) 112, 118, 163, 212, 338, 351, 359
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 3 cut(s) 97, 316, 429
Csp6I GTAC 2 cut(s) 213, 391
CviAII CATG 3 cut(s) 70, 278, 446
CviJI RGCY 6 cut(s) 32, 38, 88, 266, 302, 442
CviKI_1 RGCY 6 cut(s) 32, 38, 88, 266, 302, 442
CviQI GTAC 2 cut(s) 213, 391
DdeI CTNAG 2 cut(s) 90, 380
DpnI GATC 4 cut(s) 146, 153, 411, 456
DpnII GATC 4 cut(s) 144, 151, 409, 454
EaeI YGGCCR 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 3 cut(s) 97, 316, 429
Eco53kI GAGCTC 1 cut(s) 442
Eco81I CCTNAGG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 202, 218
EcoT38I GRGCYC 1 cut(s) 444
FaeI CATG 3 cut(s) 73, 281, 449
FaiI YATR 9 cut(s) 71, 102, 104, 186, 188, 279, 311, 425, 447
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 69, 277, 445
FauNDI CATATG 2 cut(s) 102, 186
Fnu4HI GCNGC 2 cut(s) 17, 300
FokI GGATG 7 cut(s) 119, 125, 170, 219, 345, 346, 358
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 17, 300
FspBI CTAG 1 cut(s) 467
GluI GCNGC 2 cut(s) 17, 300
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 2 cut(s) 18, 361
HaeIII GGCC 1 cut(s) 266
HapII CCGG 2 cut(s) 149, 263
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 3 cut(s) 73, 281, 449
HpaII CCGG 2 cut(s) 149, 263
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 4 cut(s) 6, 199, 393, 432
Hpy188I TCNGA 4 cut(s) 226, 328, 414, 459
Hpy188III TCNNGA 3 cut(s) 155, 319, 340
Hpy8I GTNNAC 4 cut(s) 6, 199, 393, 432
Hpy99I CGWCG 2 cut(s) 13, 16
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 6, 19, 73, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 272
HpyF3I CTNAG 2 cut(s) 90, 380
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 73, 281, 449
KroI GCCGGC 1 cut(s) 262
KroNI GCCGGC 1 cut(s) 264
Kzo9I GATC 4 cut(s) 144, 151, 409, 454
LmnI GCTCC 4 cut(s) 37, 85, 296, 447
Lsp1109I GCAGC 2 cut(s) 3, 311
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 467
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 248
MalI GATC 4 cut(s) 146, 153, 411, 456
MboI GATC 4 cut(s) 144, 151, 409, 454
MboII GAAGA 4 cut(s) 140, 143, 176, 182
MflI RGATCY 2 cut(s) 144, 409
MhlI GDGCHC 5 cut(s) 8, 45, 69, 121, 444
MluCI AATT 2 cut(s) 237, 397
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 9 cut(s) 76, 85, 88, 130, 169, 192, 287, 336, 400
MroNI GCCGGC 1 cut(s) 262
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 38, 302
MspI CCGG 2 cut(s) 149, 263
MspR9I CCNGG 3 cut(s) 149, 204, 220
MvaI CCWGG 2 cut(s) 204, 220
MwoI GCNNNNNNNGC 2 cut(s) 116, 272
NaeI GCCGGC 1 cut(s) 264
NciI CCSGG 1 cut(s) 149
NdeI CATATG 2 cut(s) 102, 186
NdeII GATC 4 cut(s) 144, 151, 409, 454
NgoMIV GCCGGC 1 cut(s) 262
NlaIII CATG 3 cut(s) 73, 281, 449
NlaIV GGNNCC 4 cut(s) 87, 146, 180, 430
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 2 cut(s) 18, 301
Psp124BI GAGCTC 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 202, 218
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 2 cut(s) 202, 218
PspN4I GGNNCC 4 cut(s) 87, 146, 180, 430
PspPI GGNCC 3 cut(s) 97, 316, 429
PsuI RGATCY 2 cut(s) 144, 409
PvuII CAGCTG 2 cut(s) 38, 302
RsaI GTAC 2 cut(s) 214, 392
RsaNI GTAC 2 cut(s) 213, 391
RseI CAYNNNNRTG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 444
SatI GCNGC 2 cut(s) 17, 300
Sau3AI GATC 4 cut(s) 144, 151, 409, 454
Sau96I GGNCC 3 cut(s) 97, 316, 429
ScrFI CCNGG 3 cut(s) 149, 204, 220
SduI GDGCHC 5 cut(s) 8, 45, 69, 121, 444
SetI ASST 9 cut(s) 14, 34, 40, 184, 224, 304, 318, 381, 444
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 3 cut(s) 97, 316, 429
SmiMI CAYNNNNRTG 1 cut(s) 105
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 2 cut(s) 237, 397
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 467
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 3 cut(s) 147, 202, 218
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 438, 474
TasI AATT 2 cut(s) 237, 397
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 16, 299
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 183, 362
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 1 cut(s) 257
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 3 cut(s) 97, 316, 429
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 1 cut(s) 467
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.