Rorug05G0106700

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000124
Physical Location & Seq
Forward (+)
9442587 .. 9447164
4578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0106700.1

Sequence Viewer

Length: 1215 bp
ATGTCCGATGAGCCTTCAATCACTCGATGGACCTTTCCGGAATTTAAATTGTTTTATGATGCCAAGTTTGGTAGAAAGAAAGTGTCGGAGGAAACGCAAAGTGAGCAGGCAGCCACTAATGGAGCTGTGAGTAATGGGGGAGCTTTGGGCGCTACAGCGAATGGGAATGGTCATGTGAAAAACCAATCTGACTTGGCCATCTATGAGCGATATCGAAACCAGGAAGCTGCACAGTCGAGTGGAGTTTCATCTGATCCAAATCATGTGATCCCGAAATCTTTGCTTCCTGCTTTTGACTCTGCAGAAACACGTTCATTAGCAGAGAGTTTATGCAGGGATATAGTTCGTGGTGATCCGGATGTTAAGTGGGAAACCATTAAGGGGTTAGAGAATGCTAAACGTTTACTTAAAGAAGCAGTGGTCATGCCGATTAAGTATCCCAAGTACTTTACTGGTCTCTTATCACCTTGGAAAGGTATTCTCCTTTTTGGCCCTCCAGGGACAGGAAAGACTATGCTTGCGAAGGCTGTTGCAACAGAGTGCAAGACCACATTTTTCAACATTTCAGCATCATCAGTTGTCAGTAAATGGCGTGGTGACTCAGAGAAGTTAGTAAAGGTGTTATTTGAGCTCGCCAGGCACCATGCACCCTCAACTATATTTATTGACGAAATTGATGCAATTATTAGTCAACGTGGTGAAGCACGAAGTGAGCATGAAGCAAGTAGGCGTTTGAAAACGGAGCTTCTGATACAGATGGATGGTTTGATGAAGACAAATGAACTAGTGTTTGTTTTGGCCGCAACAAATCTTCCTTGGGAACTAGATGCAGCCATGCTCCGGCGTCTTGAAAAACGAATTCTTGTGCCTCTGCCTGAACCCGAAGCTCGAAGAGCCATGTTTGAGGAGCTCCTGCCACTAGAGCCTGGTGAGGAGGAGCTTCCTTATGATTTGTTGGTGGATAAGACAGAAGGATATTCAGGTTCTGATATTAGGCTGGTGTGCAAGGAGGCTGCCATGCAGCCCCTGAGACGCCTAATGACACTCCTTGAAGACAAAGAGGAAGTGGTGCCTGAGGATGAACTGCCTAAGGTTGGACCAATCAAACACGATGACATTGAGACAGCTTTGAAGAACACAAGGCCATCTGCTCATCTCCAGGCTCATCGTTATGAGAAGTTCAATGCTGATTACGGCAGTCAAATACTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

404

Amino Acids

45.19

Weight (kDa)

5.68

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 160 - 291 1.1e-40 ATPase family associated with various cellular activities (AAA)
RuvB_N PF05496 160 - 230 3.3e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA_lid_3 PF17862 316 - 353 4.4e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 639, 1069
AccIII TCCGGA 2 cut(s) 37, 355
AciI CCGC 1 cut(s) 801
AclI AACGTT 1 cut(s) 400
AclWI GGATC 3 cut(s) 248, 262, 347
AcoI YGGCCR 2 cut(s) 195, 798
AcsI RAATTY 2 cut(s) 41, 858
AcyI GRCGYC 2 cut(s) 844, 1033
AdeI CACNNNGTG 1 cut(s) 710
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 5 cut(s) 381, 473, 503, 840, 1094
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 7 cut(s) 18, 559, 736, 851, 1052, 1132, 1183
AhlI ACTAGT 1 cut(s) 784
AjnI CCWGG 5 cut(s) 219, 496, 635, 925, 1158
AluBI AGCT 9 cut(s) 125, 143, 227, 631, 745, 887, 910, 940, 1127
AluI AGCT 9 cut(s) 125, 143, 227, 631, 745, 887, 910, 940, 1127
Alw21I GWGCWC 2 cut(s) 633, 912
Alw26I GTCTC 3 cut(s) 461, 1024, 1115
AlwI GGATC 3 cut(s) 248, 262, 347
AlwNI CAGNNNCTG 2 cut(s) 986, 1027
Aor13HI TCCGGA 2 cut(s) 37, 355
AoxI GGCC 4 cut(s) 195, 490, 798, 1142
ApeKI GCWGC 5 cut(s) 110, 227, 830, 1013, 1021
ApoI RAATTY 2 cut(s) 41, 858
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 30, 491, 1097
AsuHPI GGTGA 5 cut(s) 362, 456, 608, 710, 941
AvaII GGWCC 2 cut(s) 30, 1097
AxyI CCTNAGG 2 cut(s) 1074, 1089
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 2 cut(s) 639, 1069
BanII GRGCYC 2 cut(s) 633, 912
BbsI GAAGAC 2 cut(s) 779, 1059
Bbv12I GWGCWC 2 cut(s) 633, 912
BbvI GCAGC 5 cut(s) 122, 214, 842, 1000, 1033
BccI CCATC 5 cut(s) 21, 206, 751, 755, 1153
BceAI ACGGC 1 cut(s) 1210
BcgI CGANNNNNNTGC 4 cut(s) 262, 296, 659, 693
BciT130I CCWGG 5 cut(s) 221, 498, 637, 927, 1160
BciVI GTATCC 1 cut(s) 447
BcoDI GTCTC 3 cut(s) 461, 1024, 1115
BcuI ACTAGT 1 cut(s) 784
BfaI CTAG 3 cut(s) 785, 824, 920
BfmI CTRYAG 2 cut(s) 153, 300
BfoI RGCGCY 1 cut(s) 153
BfuI GTATCC 1 cut(s) 447
BisI GCNGC 6 cut(s) 111, 228, 801, 831, 1014, 1022
BlsI GCNGC 6 cut(s) 112, 229, 802, 832, 1015, 1023
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 5 cut(s) 221, 498, 637, 927, 1160
Bme18I GGWCC 2 cut(s) 30, 1097
BmgT120I GGNCC 3 cut(s) 30, 491, 1097
BmiI GGNNCC 2 cut(s) 641, 1071
BmrFI CCNGG 5 cut(s) 221, 498, 637, 927, 1160
BmsI GCATC 4 cut(s) 49, 578, 667, 817
BpiI GAAGAC 2 cut(s) 779, 1059
BpmI CTGGAG 2 cut(s) 480, 1142
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 2 cut(s) 844, 1033
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 3 cut(s) 467, 497, 815
BsaWI WCCGGW 2 cut(s) 37, 355
Bsc4I CCNNNNNNNGG 5 cut(s) 381, 473, 503, 840, 1094
Bse1I ACTGG 1 cut(s) 457
Bse21I CCTNAGG 2 cut(s) 1074, 1089
Bse8I GATNNNNATC 1 cut(s) 258
BseAI TCCGGA 2 cut(s) 37, 355
BseBI CCWGG 5 cut(s) 221, 498, 637, 927, 1160
BseDI CCNNGG 3 cut(s) 467, 497, 815
BseGI GGATG 3 cut(s) 364, 766, 1084
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 5 cut(s) 381, 473, 503, 840, 1094
BseMII CTCAG 3 cut(s) 615, 1019, 1065
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 3 cut(s) 920, 947, 950
BseXI GCAGC 5 cut(s) 122, 214, 842, 1000, 1033
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 4 cut(s) 197, 492, 800, 1144
BshNI GGYRCC 2 cut(s) 639, 1069
BsiHKAI GWGCWC 2 cut(s) 633, 912
BsiSI CCGG 3 cut(s) 38, 356, 841
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 5 cut(s) 381, 473, 503, 840, 1094
BsmAI GTCTC 3 cut(s) 461, 1024, 1115
BsmBI CGTCTC 1 cut(s) 1024
BsmFI GGGAC 1 cut(s) 514
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 4 cut(s) 197, 492, 800, 1144
Bso31I GGTCTC 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 633, 912
Bsp13I TCCGGA 2 cut(s) 37, 355
Bsp143I GATC 3 cut(s) 253, 267, 352
BspACI CCGC 1 cut(s) 801
BspANI GGCC 4 cut(s) 197, 492, 800, 1144
BspCNI CTCAG 3 cut(s) 614, 1020, 1066
BspEI TCCGGA 2 cut(s) 37, 355
BspLI GGNNCC 2 cut(s) 641, 1071
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 3 cut(s) 248, 262, 347
BspQI GCTCTTC 1 cut(s) 886
BspT107I GGYRCC 2 cut(s) 639, 1069
BspTNI GGTCTC 1 cut(s) 461
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 3 cut(s) 467, 497, 815
BssMI GATC 3 cut(s) 253, 267, 352
BssNI GRCGYC 2 cut(s) 844, 1033
BssT1I CCWWGG 2 cut(s) 467, 815
Bst2UI CCWGG 5 cut(s) 221, 498, 637, 927, 1160
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 886
BstACI GRCGYC 2 cut(s) 844, 1033
BstC8I GCNNGC 3 cut(s) 108, 519, 633
BstDEI CTNAG 4 cut(s) 601, 1028, 1074, 1089
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 364, 766, 1084
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 256, 270, 355
BstMAI GTCTC 3 cut(s) 461, 1024, 1115
BstMBI GATC 3 cut(s) 253, 267, 352
BstMWI GCNNNNNNNGC 5 cut(s) 103, 149, 637, 893, 922
BstNI CCWGG 5 cut(s) 221, 498, 637, 927, 1160
BstSCI CCNGG 5 cut(s) 219, 496, 635, 925, 1158
BstSFI CTRYAG 2 cut(s) 153, 300
BstV1I GCAGC 5 cut(s) 122, 214, 842, 1000, 1033
BstV2I GAAGAC 2 cut(s) 779, 1059
Bsu36I CCTNAGG 2 cut(s) 1074, 1089
BsuI GTATCC 1 cut(s) 447
BsuRI GGCC 4 cut(s) 197, 492, 800, 1144
BtsCI GGATG 3 cut(s) 364, 766, 1084
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 3 cut(s) 108, 519, 633
CaiI CAGNNNCTG 2 cut(s) 986, 1027
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 30, 491, 1097
CseI GACGC 2 cut(s) 833, 1041
Csp6I GTAC 1 cut(s) 445
CviAII CATG 8 cut(s) 173, 263, 424, 644, 716, 835, 898, 1018
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 4 cut(s) 601, 1028, 1074, 1089
DpnI GATC 3 cut(s) 255, 269, 354
DpnII GATC 3 cut(s) 253, 267, 352
DraI TTTAAA 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 710
EaeI YGGCCR 2 cut(s) 195, 798
Eam1104I CTCTTC 1 cut(s) 886
EarI CTCTTC 1 cut(s) 886
Ecl136II GAGCTC 2 cut(s) 631, 910
Eco130I CCWWGG 2 cut(s) 467, 815
Eco24I GRGCYC 2 cut(s) 633, 912
Eco31I GGTCTC 1 cut(s) 461
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 30, 1097
Eco53kI GAGCTC 2 cut(s) 631, 910
Eco81I CCTNAGG 2 cut(s) 1074, 1089
EcoICRI GAGCTC 2 cut(s) 631, 910
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 858
EcoRII CCWGG 5 cut(s) 219, 496, 635, 925, 1158
EcoRV GATATC 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 467, 815
EcoT38I GRGCYC 2 cut(s) 633, 912
ErhI CCWWGG 2 cut(s) 467, 815
Esp3I CGTCTC 1 cut(s) 1024
FaeI CATG 8 cut(s) 176, 266, 427, 647, 719, 838, 901, 1021
FaqI GGGAC 1 cut(s) 514
FatI CATG 8 cut(s) 172, 262, 423, 643, 715, 834, 897, 1017
Fnu4HI GCNGC 6 cut(s) 111, 228, 801, 831, 1014, 1022
FokI GGATG 3 cut(s) 371, 773, 1091
FriOI GRGCYC 2 cut(s) 633, 912
Fsp4HI GCNGC 6 cut(s) 111, 228, 801, 831, 1014, 1022
FspBI CTAG 3 cut(s) 785, 824, 920
GlaI GCGC 1 cut(s) 151
GluI GCNGC 6 cut(s) 111, 228, 801, 831, 1014, 1022
GsuI CTGGAG 2 cut(s) 480, 1142
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 4 cut(s) 197, 492, 800, 1144
HapII CCGG 3 cut(s) 38, 356, 841
HgaI GACGC 2 cut(s) 833, 1041
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 2 cut(s) 844, 1033
Hin1II CATG 8 cut(s) 176, 266, 427, 647, 719, 838, 901, 1021
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HinfI GANTC 2 cut(s) 296, 599
HpaII CCGG 3 cut(s) 38, 356, 841
HphI GGTGA 5 cut(s) 362, 456, 608, 710, 941
Hpy166II GTNNAC 2 cut(s) 404, 692
Hpy188I TCNGA 7 cut(s) 7, 88, 190, 253, 604, 750, 988
Hpy188III TCNNGA 4 cut(s) 38, 271, 356, 848
Hpy8I GTNNAC 2 cut(s) 404, 692
HpyAV CCTTC 3 cut(s) 24, 517, 965
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 3 cut(s) 310, 400, 694
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 149, 637, 893, 922
HpyF3I CTNAG 4 cut(s) 601, 1028, 1074, 1089
HpySE526I ACGT 3 cut(s) 310, 400, 694
Hsp92I GRCGYC 2 cut(s) 844, 1033
Hsp92II CATG 8 cut(s) 176, 266, 427, 647, 719, 838, 901, 1021
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 2 cut(s) 37, 355
Kzo9I GATC 3 cut(s) 253, 267, 352
LguI GCTCTTC 1 cut(s) 886
LmnI GCTCC 7 cut(s) 122, 140, 742, 843, 907, 915, 937
Lsp1109I GCAGC 5 cut(s) 122, 214, 842, 1000, 1033
LweI GCATC 4 cut(s) 49, 578, 667, 817
MaeI CTAG 3 cut(s) 785, 824, 920
MaeII ACGT 3 cut(s) 310, 400, 694
MaeIII GTNAC 1 cut(s) 596
MalI GATC 3 cut(s) 255, 269, 354
MboI GATC 3 cut(s) 253, 267, 352
MboII GAAGA 5 cut(s) 784, 803, 903, 1064, 1144
MhlI GDGCHC 2 cut(s) 633, 912
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 5 cut(s) 41, 47, 672, 681, 858
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 2 cut(s) 290, 593
MmeI TCCRAC 2 cut(s) 66, 1075
Mox20I TGGCCA 1 cut(s) 197
MroI TCCGGA 2 cut(s) 37, 355
MscI TGGCCA 1 cut(s) 197
MseI TTAA 5 cut(s) 45, 363, 378, 408, 432
MslI CAYNNNNRTG 1 cut(s) 1170
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 3 cut(s) 38, 356, 841
MspR9I CCNGG 5 cut(s) 221, 498, 637, 927, 1160
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 5 cut(s) 221, 498, 637, 927, 1160
MwoI GCNNNNNNNGC 5 cut(s) 103, 149, 637, 893, 922
NdeII GATC 3 cut(s) 253, 267, 352
NlaIII CATG 8 cut(s) 176, 266, 427, 647, 719, 838, 901, 1021
NlaIV GGNNCC 2 cut(s) 641, 1071
NmuCI GTSAC 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 886
PctI GAATGC 1 cut(s) 397
PkrI GCNGC 6 cut(s) 112, 229, 802, 832, 1015, 1023
PleI GAGTC 2 cut(s) 290, 593
PpsI GAGTC 2 cut(s) 290, 593
Psp124BI GAGCTC 2 cut(s) 633, 912
Psp1406I AACGTT 1 cut(s) 400
Psp6I CCWGG 5 cut(s) 219, 496, 635, 925, 1158
PspGI CCWGG 5 cut(s) 219, 496, 635, 925, 1158
PspN4I GGNNCC 2 cut(s) 641, 1071
PspPI GGNCC 3 cut(s) 30, 491, 1097
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 2 cut(s) 986, 1027
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 1170
SacI GAGCTC 2 cut(s) 633, 912
SapI GCTCTTC 1 cut(s) 886
SaqAI TTAA 5 cut(s) 45, 363, 378, 408, 432
SatI GCNGC 6 cut(s) 111, 228, 801, 831, 1014, 1022
Sau3AI GATC 3 cut(s) 253, 267, 352
Sau96I GGNCC 3 cut(s) 30, 491, 1097
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 2 cut(s) 290, 593
ScrFI CCNGG 5 cut(s) 221, 498, 637, 927, 1160
SduI GDGCHC 2 cut(s) 633, 912
SfaNI GCATC 4 cut(s) 49, 578, 667, 817
SfcI CTRYAG 2 cut(s) 153, 300
SinI GGWCC 2 cut(s) 30, 1097
SmiI ATTTAAAT 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 1170
SpeI ACTAGT 1 cut(s) 784
Sse9I AATT 5 cut(s) 41, 47, 672, 681, 858
SsiI CCGC 1 cut(s) 801
SspMI CTAG 3 cut(s) 785, 824, 920
SstI GAGCTC 2 cut(s) 633, 912
StyD4I CCNGG 5 cut(s) 219, 496, 635, 925, 1158
StyI CCWWGG 2 cut(s) 467, 815
SwaI ATTTAAAT 1 cut(s) 46
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 3 cut(s) 313, 403, 697
TaqI TCGA 4 cut(s) 25, 214, 236, 889
TasI AATT 5 cut(s) 41, 47, 672, 681, 858
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 803
Tru1I TTAA 5 cut(s) 45, 363, 378, 408, 432
Tru9I TTAA 5 cut(s) 45, 363, 378, 408, 432
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 5 cut(s) 110, 227, 830, 1013, 1021
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 6 cut(s) 237, 303, 732, 785, 795, 1095
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 2 cut(s) 30, 1097
XagI CCTNNNNNAGG 1 cut(s) 471
XapI RAATTY 2 cut(s) 41, 858
XspI CTAG 3 cut(s) 785, 824, 920
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.