Rorug05G0252800

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
27747658 .. 27748656
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0252800.1

Sequence Viewer

Length: 507 bp
ATGTGCTTCAGTCCCCAGCTTCTGTCGCTGTCTTGGCGTGGCGCGTGGAGGCGCGTCAGCTGTAATCTGGGGCTAATTATGCTTGCAAATGCCTATGTAAGTACAAGGATAATCCCTCGTGATCTAAAAGCTAGCAATGTCTTATTAGACTATGAATTGAATCCAAAGTTTTCAGATTTTTGCATTGCTAGGAGTTTTGGAGGAGAAAAAACTGAAGTAAATACGAACAGAGTGGTTGGAACATATTACATGTCTCCAGAATATGTAATTGATGGTGTCTTCTCGGTGAAATCTGATGTTTTTAGCTTTGGTGTTTTGGTACTTGAGATAGTGAGTGGAAAGAAGAACAGAGGATTTTCTCACCCAGACCACAAGCTTAACCTTCTTGGACATCCTAATGATCCAGGCTTTTTCACAGAAAGGCATCTGCTATCTATGGCTTCCTCGTCCAGCCAGCGTGAAAGATCTTCATCCAACAGACTATCCATTTCACTAGAGGCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.86

Weight (kDa)

9.3

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 34 - 115 1.1e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 34 - 115 6.6e-16 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 44, 54
AclWI GGATC 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 2 cut(s) 103, 321
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 5 cut(s) 19, 60, 131, 306, 376
AluI AGCT 5 cut(s) 19, 60, 131, 306, 376
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 395
AlwNI CAGNNNCTG 1 cut(s) 22
AspLEI GCGC 2 cut(s) 44, 54
AsuHPI GGTGA 2 cut(s) 298, 353
AsuNHI GCTAGC 1 cut(s) 131
BauI CACGAG 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 271
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 3 cut(s) 132, 189, 494
BglII AGATCT 1 cut(s) 464
Bme1390I CCNGG 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 433
BmtI GCTAGC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 469
Bse3DI GCAATG 2 cut(s) 142, 183
Bse8I GATNNNNATC 1 cut(s) 469
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 2 cut(s) 391, 470
BseJI GATNNNNATC 1 cut(s) 469
BseMI GCAATG 2 cut(s) 142, 183
BseRI GAGGAG 1 cut(s) 216
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 2 cut(s) 44, 54
BsmAI GTCTC 1 cut(s) 258
Bsp143I GATC 3 cut(s) 121, 400, 464
BspFNI CGCG 2 cut(s) 44, 54
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 142, 183
BssMI GATC 3 cut(s) 121, 400, 464
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 84, 133, 455
BstF5I GGATG 2 cut(s) 391, 470
BstFNI CGCG 2 cut(s) 44, 54
BstHHI GCGC 2 cut(s) 44, 54
BstKTI GATC 3 cut(s) 124, 403, 467
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 3 cut(s) 121, 400, 464
BstMWI GCNNNNNNNGC 3 cut(s) 25, 34, 79
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 403
BstUI CGCG 2 cut(s) 44, 54
BstV2I GAAGAC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BtsCI GGATG 2 cut(s) 391, 470
Cac8I GCNNGC 3 cut(s) 84, 133, 455
CaiI CAGNNNCTG 1 cut(s) 22
CfoI GCGC 2 cut(s) 44, 54
CseI GACGC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 102, 320
CviAII CATG 1 cut(s) 250
CviQI GTAC 2 cut(s) 102, 320
DpnI GATC 3 cut(s) 123, 402, 466
DpnII GATC 3 cut(s) 121, 400, 464
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 253
FaiI YATR 7 cut(s) 80, 96, 153, 244, 251, 264, 437
FatI CATG 1 cut(s) 249
FokI GGATG 2 cut(s) 378, 457
FspBI CTAG 3 cut(s) 132, 189, 494
GlaI GCGC 2 cut(s) 43, 53
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 240
HgaI GACGC 1 cut(s) 43
HhaI GCGC 2 cut(s) 44, 54
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 2 cut(s) 42, 52
HinP1I GCGC 2 cut(s) 42, 52
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 160
HphI GGTGA 2 cut(s) 298, 353
Hpy188I TCNGA 2 cut(s) 175, 295
Hpy188III TCNNGA 2 cut(s) 119, 257
HpyAV CCTTC 1 cut(s) 392
HpyCH4V TGCA 2 cut(s) 86, 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 34, 79
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 2 cut(s) 42, 52
Kzo9I GATC 3 cut(s) 121, 400, 464
LpnPI CCDG 8 cut(s) 29, 53, 270, 378, 390, 417, 463, 467
LweI GCATC 1 cut(s) 433
MaeI CTAG 3 cut(s) 132, 189, 494
MalI GATC 3 cut(s) 123, 402, 466
MboI GATC 3 cut(s) 121, 400, 464
MboII GAAGA 3 cut(s) 271, 355, 459
MflI RGATCY 1 cut(s) 464
MluCI AATT 3 cut(s) 75, 155, 267
MmeI TCCRAC 2 cut(s) 217, 498
MnlI CCTC 6 cut(s) 42, 126, 194, 344, 454, 490
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 2 cut(s) 44, 54
MwoI GCNNNNNNNGC 3 cut(s) 25, 34, 79
NdeII GATC 3 cut(s) 121, 400, 464
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 253
NspI RCATGY 1 cut(s) 253
PciI ACATGT 1 cut(s) 249
PfeI GAWTC 1 cut(s) 160
PscI ACATGT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 60
RsaI GTAC 2 cut(s) 103, 321
RsaNI GTAC 2 cut(s) 102, 320
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 1 cut(s) 378
Sau3AI GATC 3 cut(s) 121, 400, 464
ScrFI CCNGG 1 cut(s) 405
SetI ASST 6 cut(s) 21, 62, 133, 308, 378, 384
SfaNI GCATC 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 75, 155, 267
SspMI CTAG 3 cut(s) 132, 189, 494
StyD4I CCNGG 1 cut(s) 403
TaqI TCGA 1 cut(s) 502
TasI AATT 3 cut(s) 75, 155, 267
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TspDTI ATGAA 2 cut(s) 168, 459
XceI RCATGY 1 cut(s) 253
XspI CTAG 3 cut(s) 132, 189, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.