Rmu_sc0005712.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005712.1
OG0000124
Physical Location & Seq
Forward (+)
129334 .. 130244
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005712.1_g000023.1.cds

Sequence Viewer

Length: 672 bp
atgcatgatagactgattgcggatggggcccctgctcggtgtgaactccaatgggagatggtgcctccatgcctccagcaggtcgacattacaggaggacgtaaggagctgcggttcgcttgtgcatgggaaagatttcacttcgagaatcggttggacaaacgtcggtgctgtgtgttcacctacctgggaaatctacgtttctccgttcttgtgttcgacactgttcgaggtaacctgtgcacgacgccgctgcaatacacccaagctccagctgtgcccccacattttaggggtaatgagcacatgcagggtaatgaggagcctgaggaggaccatatggatgcggatagggcacagggggaagaagacgaggaacagatcccggatcaggatgttgaagatgaagatgaggaactttatatggaacgggtgaacccaagatggctatctgccggccaagtttgctcaggccacatttcccagaggagcagtgtgaagataaaggtccagaaatcagatggacgtgtctggaggatgaaagccgtcccatccaataccactcactacctaagtgctgggtactccaaattcagggaggctctgaaactgcccatagggtccacaatcgagctccatgtggttgaccggaacagactagtgttcgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.78

Weight (kDa)

5.44

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 84
AciI CCGC 4 cut(s) 20, 112, 251, 347
AclWI GGATC 2 cut(s) 376, 396
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 1 cut(s) 590
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 4 cut(s) 36, 79, 391, 594
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 1 cut(s) 401
AhlI ACTAGT 1 cut(s) 658
AjiI CACGTC 1 cut(s) 527
AjnI CCWGG 1 cut(s) 186
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 4 cut(s) 109, 269, 275, 634
AluI AGCT 4 cut(s) 109, 269, 275, 634
Alw21I GWGCWC 3 cut(s) 245, 306, 636
Alw44I GTGCAC 1 cut(s) 241
AlwI GGATC 2 cut(s) 376, 396
AoxI GGCC 3 cut(s) 27, 457, 472
ApaI GGGCCC 1 cut(s) 31
ApaLI GTGCAC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 109, 253
ApoI RAATTY 1 cut(s) 590
Asp700I GAANNNNTTC 1 cut(s) 135
AspS9I GGNCC 5 cut(s) 27, 28, 334, 508, 621
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 172, 445
AvaII GGWCC 3 cut(s) 334, 508, 621
AxyI CCTNAGG 1 cut(s) 327
BaeGI GKGCMC 4 cut(s) 31, 245, 282, 358
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 31, 636
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 3 cut(s) 245, 306, 636
BbvI GCAGC 2 cut(s) 96, 240
BccI CCATC 5 cut(s) 17, 52, 438, 515, 559
BceAI ACGGC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 188
BcnI CCSGG 1 cut(s) 386
BcuI ACTAGT 1 cut(s) 658
BfaI CTAG 1 cut(s) 659
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 3 cut(s) 110, 251, 254
BlsI GCNGC 3 cut(s) 111, 252, 255
Bme1390I CCNGG 2 cut(s) 188, 386
Bme18I GGWCC 3 cut(s) 334, 508, 621
BmgBI CACGTC 1 cut(s) 527
BmgT120I GGNCC 5 cut(s) 27, 28, 334, 508, 621
BmiI GGNNCC 6 cut(s) 28, 29, 30, 63, 324, 622
BmrFI CCNGG 2 cut(s) 188, 386
BmsI GCATC 1 cut(s) 334
BoxI GACNNNNGTC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 3 cut(s) 59, 255, 553
Bpu10I CCTNAGC 1 cut(s) 469
BpuMI CCSGG 1 cut(s) 386
BsaBI GATNNNNATC 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 648
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 253, 283
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 79, 391, 594
Bse118I RCCGGY 1 cut(s) 455
Bse21I CCTNAGG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 448
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 5 cut(s) 28, 349, 400, 543, 551
BseJI GATNNNNATC 1 cut(s) 448
BseLI CCNNNNNNNGG 4 cut(s) 36, 79, 391, 594
BseMII CTCAG 2 cut(s) 318, 483
BseRI GAGGAG 3 cut(s) 335, 344, 502
BseSI GKGCMC 4 cut(s) 31, 245, 282, 358
BseXI GCAGC 2 cut(s) 96, 240
BseYI CCCAGC 1 cut(s) 578
BshFI GGCC 3 cut(s) 29, 459, 474
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 3 cut(s) 245, 306, 636
BsiSI CCGG 3 cut(s) 386, 456, 649
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 4 cut(s) 36, 79, 391, 594
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 3 cut(s) 29, 459, 474
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 6 cut(s) 31, 245, 282, 306, 358, 636
Bsp143I GATC 2 cut(s) 381, 388
BspACI CCGC 4 cut(s) 20, 112, 251, 347
BspANI GGCC 3 cut(s) 29, 459, 474
BspCNI CTCAG 2 cut(s) 319, 482
BspLI GGNNCC 6 cut(s) 28, 29, 30, 63, 324, 622
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 376, 396
BspT107I GGYRCC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 381, 388
BssNI GRCGYC 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 3 cut(s) 327, 469, 572
BstEII GGTNACC 1 cut(s) 233
BstENI CCTNNNNNAGG 1 cut(s) 77
BstF5I GGATG 5 cut(s) 28, 349, 400, 543, 551
BstKTI GATC 2 cut(s) 384, 391
BstMBI GATC 2 cut(s) 381, 388
BstMWI GCNNNNNNNGC 3 cut(s) 26, 353, 465
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 310
BstPAI GACNNNNGTC 1 cut(s) 162
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 186, 384
BstSLI GKGCMC 4 cut(s) 31, 245, 282, 358
BstV1I GCAGC 2 cut(s) 96, 240
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 3 cut(s) 29, 459, 474
BtrI CACGTC 1 cut(s) 527
BtsCI GGATG 5 cut(s) 28, 349, 400, 543, 551
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 2 cut(s) 222, 499
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 5 cut(s) 27, 28, 334, 508, 621
CseI GACGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 583
CviAII CATG 5 cut(s) 5, 69, 126, 307, 638
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 3 cut(s) 327, 469, 572
DpnI GATC 2 cut(s) 383, 390
DpnII GATC 2 cut(s) 381, 388
EaeI YGGCCR 1 cut(s) 457
Ecl136II GAGCTC 1 cut(s) 634
Eco24I GRGCYC 2 cut(s) 31, 636
Eco47I GGWCC 3 cut(s) 334, 508, 621
Eco53kI GAGCTC 1 cut(s) 634
Eco81I CCTNAGG 1 cut(s) 327
Eco91I GGTNACC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 634
EcoNI CCTNNNNNAGG 1 cut(s) 77
EcoO109I RGGNCCY 2 cut(s) 27, 28
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 31, 636
FaeI CATG 5 cut(s) 8, 72, 129, 310, 641
FaqI GGGAC 1 cut(s) 533
FatI CATG 5 cut(s) 4, 68, 125, 306, 637
FauNDI CATATG 1 cut(s) 339
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 110, 251, 254
FokI GGATG 5 cut(s) 35, 356, 407, 538, 550
FriOI GRGCYC 2 cut(s) 31, 636
Fsp4HI GCNGC 3 cut(s) 110, 251, 254
FspBI CTAG 1 cut(s) 659
GluI GCNGC 3 cut(s) 110, 251, 254
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 3 cut(s) 59, 255, 553
HaeIII GGCC 3 cut(s) 29, 459, 474
HapII CCGG 3 cut(s) 386, 456, 649
HgaI GACGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 5 cut(s) 8, 72, 129, 310, 641
HincII GTYRAC 2 cut(s) 85, 646
HindII GTYRAC 2 cut(s) 85, 646
HinfI GANTC 1 cut(s) 148
HpaII CCGG 3 cut(s) 386, 456, 649
HphI GGTGA 2 cut(s) 172, 445
Hpy166II GTNNAC 7 cut(s) 44, 85, 180, 243, 436, 624, 646
Hpy188I TCNGA 2 cut(s) 520, 606
Hpy188III TCNNGA 4 cut(s) 145, 392, 511, 532
Hpy8I GTNNAC 7 cut(s) 44, 85, 180, 243, 436, 624, 646
Hpy99I CGWCG 2 cut(s) 168, 250
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 4 cut(s) 100, 163, 199, 526
HpyCH4V TGCA 5 cut(s) 4, 125, 243, 256, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 353, 465
HpyF3I CTNAG 3 cut(s) 327, 469, 572
HpySE526I ACGT 4 cut(s) 100, 163, 199, 526
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 5 cut(s) 8, 72, 129, 310, 641
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Kzo9I GATC 2 cut(s) 381, 388
LmnI GCTCC 5 cut(s) 106, 274, 322, 489, 639
Lsp1109I GCAGC 2 cut(s) 96, 240
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 659
MaeII ACGT 4 cut(s) 100, 163, 199, 526
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 383, 390
MboI GATC 2 cut(s) 381, 388
MboII GAAGA 5 cut(s) 377, 380, 413, 419, 511
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 6 cut(s) 31, 245, 282, 306, 358, 636
MluCI AATT 1 cut(s) 590
MmeI TCCRAC 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 455
MroXI GAANNNNTTC 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 253, 275
MspI CCGG 3 cut(s) 386, 456, 649
MspR9I CCNGG 2 cut(s) 188, 386
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 26, 353, 465
NaeI GCCGGC 1 cut(s) 457
NciI CCSGG 1 cut(s) 386
NdeI CATATG 1 cut(s) 339
NdeII GATC 2 cut(s) 381, 388
NgoMIV GCCGGC 1 cut(s) 455
NlaIII CATG 5 cut(s) 8, 72, 129, 310, 641
NlaIV GGNNCC 6 cut(s) 28, 29, 30, 63, 324, 622
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 310
PdiI GCCGGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 384
PkrI GCNGC 3 cut(s) 111, 252, 255
PshAI GACNNNNGTC 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 186
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 6 cut(s) 28, 29, 30, 63, 324, 622
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 5 cut(s) 27, 28, 334, 508, 621
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 342
SacI GAGCTC 1 cut(s) 636
SalI GTCGAC 1 cut(s) 83
SatI GCNGC 3 cut(s) 110, 251, 254
Sau3AI GATC 2 cut(s) 381, 388
Sau96I GGNCC 5 cut(s) 27, 28, 334, 508, 621
ScrFI CCNGG 2 cut(s) 188, 386
SduI GDGCHC 6 cut(s) 31, 245, 282, 306, 358, 636
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 3 cut(s) 334, 508, 621
SmiMI CAYNNNNRTG 1 cut(s) 342
SpeI ACTAGT 1 cut(s) 658
Sse9I AATT 1 cut(s) 590
SsiI CCGC 4 cut(s) 20, 112, 251, 347
SspMI CTAG 1 cut(s) 659
SstI GAGCTC 1 cut(s) 636
StyD4I CCNGG 2 cut(s) 186, 384
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 4 cut(s) 103, 166, 202, 529
TaqI TCGA 6 cut(s) 84, 144, 219, 229, 630, 666
TasI AATT 1 cut(s) 590
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 1 cut(s) 148
TscAI CASTG 2 cut(s) 229, 499
TseI GCWGC 2 cut(s) 109, 253
TspDTI ATGAA 2 cut(s) 420, 554
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 2 cut(s) 229, 499
VneI GTGCAC 1 cut(s) 241
VpaK11BI GGWCC 3 cut(s) 334, 508, 621
XagI CCTNNNNNAGG 1 cut(s) 77
XapI RAATTY 1 cut(s) 590
XceI RCATGY 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 1 cut(s) 659
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.