Rh1AG004500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000124
Physical Location & Seq
Reverse (-)
687617 .. 688340
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG004500.1

Sequence Viewer

Length: 630 bp
ATGTGTTGTGCTCAATCGCAGCCCGCCATCCCAAGGGGTCGCCTATACGCGGCCATCCGCAATGATGGCGGTCCAGGACTGTGTCTCTTAAGGTGGGAGTCAAGGAAGGGGATGATATTTTGGCATGTTGAGCTGACTAGAGGCGTAGGTTGCATGACTTTTTGTGAAGGGTGGAACAGATTTGCAACCCACAATCGGCTACTTGATGGAAAGCGGTTTTGTGTCTTCACTTACAGGGGTGGCCTTGAGTTCTCCGTCCTTGTTTTCCACAAACGCAGGGGTACGTTGATGATGAATGTTAGCCAATTCGCTGTTGTGCCCCCACCACAACAAGTTCCAGAGTTGCAGGAGGTCGATGAACATGCCGTGGTTCAGCCGGGGATGCAGGAGGTAAATGCTGATGAGGCTGAGCAGGATATGGACATTGGCGGTATAGAGGGGGCCGCTTTGGGGGCTTCTACTAATGGGCCTGTGTACGAGGACGTTGTCGGTGACTACCAACGCCTCCGTCATTGTGATGTCAAGATTCAGCAAAGTCATGGAGCGTTTCTCACAAAAGATGCTCGTTATCTGTTTCCTAGAAAGGGTAACGCATGTGTTAAGCTGCAAAGGTCAGACGGAGCCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.32

Weight (kDa)

7.6

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AciI CCGC 7 cut(s) 24, 50, 58, 69, 214, 429, 444
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 2 cut(s) 283, 476
AfiI CCNNNNNNNGG 5 cut(s) 33, 49, 195, 450, 584
AflII CTTAAG 1 cut(s) 88
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 2 cut(s) 133, 604
AluI AGCT 2 cut(s) 133, 604
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 4 cut(s) 51, 241, 441, 467
ApeKI GCWGC 2 cut(s) 19, 604
AspS9I GGNCC 3 cut(s) 71, 441, 467
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 31, 591
BccI CCATC 4 cut(s) 35, 59, 62, 200
BceAI ACGGC 2 cut(s) 350, 608
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 138, 579
BfrI CTTAAG 1 cut(s) 88
BisI GCNGC 4 cut(s) 20, 51, 444, 605
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 4 cut(s) 21, 52, 445, 606
Bme1390I CCNGG 2 cut(s) 75, 378
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 71, 441, 467
BmiI GGNNCC 2 cut(s) 442, 622
BmrFI CCNGG 2 cut(s) 75, 378
BmsI GCATC 2 cut(s) 372, 550
BpiI GAAGAC 1 cut(s) 217
BplI GAGNNNNNCTC 2 cut(s) 534, 566
Bpu1102I GCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 378
BsaJI CCNNGG 3 cut(s) 32, 366, 377
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 49, 195, 450, 584
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 32, 366, 377
BseGI GGATG 4 cut(s) 27, 54, 117, 387
BseLI CCNNNNNNNGG 5 cut(s) 33, 49, 195, 450, 584
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 399
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 2 cut(s) 31, 591
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 4 cut(s) 53, 243, 443, 469
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 5 cut(s) 33, 49, 195, 450, 584
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 4 cut(s) 53, 243, 443, 469
Bsp1286I GDGCHC 2 cut(s) 13, 321
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 7 cut(s) 24, 50, 58, 69, 214, 429, 444
BspANI GGCC 4 cut(s) 53, 243, 443, 469
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 442, 622
BspTI CTTAAG 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 32, 366, 377
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 27, 54, 117, 387
BstFNI CGCG 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 6 cut(s) 66, 130, 150, 382, 404, 452
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 3 cut(s) 128, 365, 597
BstSCI CCNGG 2 cut(s) 73, 376
BstSLI GKGCMC 1 cut(s) 321
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 31, 591
BstV2I GAAGAC 1 cut(s) 217
BsuRI GGCC 4 cut(s) 53, 243, 443, 469
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 4 cut(s) 27, 54, 117, 387
Cac8I GCNNGC 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 71, 441, 467
Csp6I GTAC 2 cut(s) 282, 475
CviAII CATG 5 cut(s) 125, 154, 362, 539, 594
CviQI GTAC 2 cut(s) 282, 475
DdeI CTNAG 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 5 cut(s) 128, 157, 365, 542, 597
FaiI YATR 8 cut(s) 46, 126, 155, 363, 419, 434, 540, 595
FatI CATG 5 cut(s) 124, 153, 361, 538, 593
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 4 cut(s) 20, 51, 444, 605
FokI GGATG 4 cut(s) 14, 41, 124, 394
Fsp4HI GCNGC 4 cut(s) 20, 51, 444, 605
FspBI CTAG 2 cut(s) 138, 579
GluI GCNGC 4 cut(s) 20, 51, 444, 605
HaeIII GGCC 4 cut(s) 53, 243, 443, 469
HapII CCGG 1 cut(s) 377
Hin1II CATG 5 cut(s) 128, 157, 365, 542, 597
HinfI GANTC 2 cut(s) 98, 526
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 1 cut(s) 616
Hpy188III TCNNGA 2 cut(s) 338, 523
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 100, 161
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 2 cut(s) 284, 483
HpyCH4V TGCA 5 cut(s) 153, 185, 346, 385, 607
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 130, 150, 382, 404, 452
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 2 cut(s) 284, 483
Hsp92II CATG 5 cut(s) 128, 157, 365, 542, 597
LmnI GCTCC 2 cut(s) 542, 620
Lsp1109I GCAGC 2 cut(s) 31, 591
LweI GCATC 2 cut(s) 372, 550
MaeI CTAG 2 cut(s) 138, 579
MaeII ACGT 2 cut(s) 284, 483
MaeIII GTNAC 2 cut(s) 491, 587
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 13, 321
MluCI AATT 1 cut(s) 305
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 7 cut(s) 134, 343, 382, 397, 430, 472, 515
MseI TTAA 2 cut(s) 89, 600
MslI CAYNNNNRTG 1 cut(s) 516
MspCI CTTAAG 1 cut(s) 88
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 2 cut(s) 75, 378
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 6 cut(s) 66, 130, 150, 382, 404, 452
NciI CCSGG 1 cut(s) 378
NlaIII CATG 5 cut(s) 128, 157, 365, 542, 597
NlaIV GGNNCC 2 cut(s) 442, 622
NmuCI GTSAC 1 cut(s) 491
NspI RCATGY 3 cut(s) 128, 365, 597
PfeI GAWTC 1 cut(s) 526
PflFI GACNNNGTC 2 cut(s) 81, 485
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 4 cut(s) 21, 52, 445, 606
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 442, 622
PspPI GGNCC 3 cut(s) 71, 441, 467
PsyI GACNNNGTC 2 cut(s) 81, 485
RsaI GTAC 2 cut(s) 283, 476
RsaNI GTAC 2 cut(s) 282, 475
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 2 cut(s) 89, 600
SatI GCNGC 4 cut(s) 20, 51, 444, 605
Sau96I GGNCC 3 cut(s) 71, 441, 467
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 75, 378
SduI GDGCHC 2 cut(s) 13, 321
SetI ASST 9 cut(s) 95, 135, 151, 287, 354, 393, 486, 606, 614
SfaNI GCATC 2 cut(s) 372, 550
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 88, 245
SmoI CTYRAG 2 cut(s) 88, 245
Sse9I AATT 1 cut(s) 305
SsiI CCGC 7 cut(s) 24, 50, 58, 69, 214, 429, 444
SspMI CTAG 2 cut(s) 138, 579
StyD4I CCNGG 2 cut(s) 73, 376
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 2 cut(s) 287, 486
TaqI TCGA 1 cut(s) 354
TasI AATT 1 cut(s) 305
TauI GCSGC 2 cut(s) 53, 446
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 2 cut(s) 89, 600
Tru9I TTAA 2 cut(s) 89, 600
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 2 cut(s) 19, 604
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 2 cut(s) 308, 372
TspGWI ACGGA 2 cut(s) 244, 497
Tth111I GACNNNGTC 2 cut(s) 81, 485
Vha464I CTTAAG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 71
XceI RCATGY 3 cut(s) 128, 365, 597
XspI CTAG 2 cut(s) 138, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.