Rh7CG346500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000124
Physical Location & Seq
Reverse (-)
39171946 .. 39172392
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG346500.1

Sequence Viewer

Length: 447 bp
ATGGGAATGCTTGACTGGGGTACAGAGATCAAGCTGGGGGCTACTGTAGACGCGGGAGAGTATGGTATCTTTGTGCAGGACTTGTGCGATGGAGAAGGTCGGATACAGGTCTATCTATTAAAGGAGATTGTCATGAACCGGGCTGATGTGGACGACACGTTCCGTATTGCATTTACAATGCTTGCATTGGCTCTGGTGCTATGCCTAGGCACGGGTGACGATGTCGATCCGTCCTTGGTACTCCCGCTACTAGAGACGGGGGAGATTGGGAAGAAAAATTGGGCTTCATTCTGTGTGAAGACATTACTGGAAGCTGTGACTACTCAGCGGGAATCTGGTGACTGTGTAATTGGTGGGTGCATTCTGTTTCTGCAAACCCTTTATTTTGATAAGGTTGGCGATTCCATGTTTCACGTGGATAGGTTTTTCCTGCCACTCAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

148

Amino Acids

16.31

Weight (kDa)

4.37

Isoelectric Point (pI)

10.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 53
AciI CCGC 3 cut(s) 53, 245, 328
AclWI GGATC 1 cut(s) 221
AcvI CACGTG 1 cut(s) 415
AfaI GTAC 2 cut(s) 22, 240
AfiI CCNNNNNNNGG 2 cut(s) 211, 440
AflIII ACRYGT 1 cut(s) 156
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 2 cut(s) 34, 314
AluI AGCT 2 cut(s) 34, 314
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 221
AspA2I CCTAGG 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 227, 350
AvrII CCTAGG 1 cut(s) 205
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BbrPI CACGTG 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 305
BccI CCATC 1 cut(s) 83
BciVI GTATCC 1 cut(s) 96
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 2 cut(s) 206, 251
BfmI CTRYAG 1 cut(s) 45
BfuI GTATCC 1 cut(s) 96
BlnI CCTAGG 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 415
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 205, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 440
Bse1I ACTGG 2 cut(s) 20, 312
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 205, 234
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 211, 440
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 2 cut(s) 20, 312
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 211, 440
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmI GAATGC 2 cut(s) 12, 360
Bsp143I GATC 2 cut(s) 27, 226
BspACI CCGC 3 cut(s) 53, 245, 328
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 132
BspPI GGATC 1 cut(s) 221
BsrI ACTGG 2 cut(s) 20, 312
BssECI CCNNGG 2 cut(s) 205, 234
BssMI GATC 2 cut(s) 27, 226
BssT1I CCWWGG 2 cut(s) 205, 234
Bst4CI ACNGT 2 cut(s) 46, 344
BstBAI YACGTR 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 324, 437
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 2 cut(s) 30, 229
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 27, 226
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 45
BstUI CGCG 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 305
BsuI GTATCC 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 183
CciI TCATGA 1 cut(s) 132
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 21, 239
CviAII CATG 2 cut(s) 133, 406
CviJI RGCY 6 cut(s) 34, 41, 143, 191, 284, 314
CviKI_1 RGCY 6 cut(s) 34, 41, 143, 191, 284, 314
CviQI GTAC 2 cut(s) 21, 239
DdeI CTNAG 2 cut(s) 324, 437
DpnI GATC 2 cut(s) 29, 228
DpnII GATC 2 cut(s) 27, 226
Eco130I CCWWGG 2 cut(s) 205, 234
Eco72I CACGTG 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 205, 234
ErhI CCWWGG 2 cut(s) 205, 234
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 2 cut(s) 136, 409
FaiI YATR 4 cut(s) 63, 134, 202, 407
FatI CATG 2 cut(s) 132, 405
FauI CCCGC 3 cut(s) 46, 252, 321
FblI GTMKAC 1 cut(s) 48
FspBI CTAG 2 cut(s) 206, 251
GsaI CCCAGC 1 cut(s) 38
HapII CCGG 1 cut(s) 139
HgaI GACGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 136, 409
HinfI GANTC 2 cut(s) 332, 401
HpaII CCGG 1 cut(s) 139
HphI GGTGA 2 cut(s) 227, 350
Hpy166II GTNNAC 2 cut(s) 49, 151
Hpy188I TCNGA 2 cut(s) 102, 440
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 49, 151
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 46, 344
HpyCH4IV ACGT 2 cut(s) 158, 414
HpyCH4V TGCA 5 cut(s) 76, 170, 185, 360, 373
HpyF3I CTNAG 2 cut(s) 324, 437
HpySE526I ACGT 2 cut(s) 158, 414
Hsp92II CATG 2 cut(s) 136, 409
Kzo9I GATC 2 cut(s) 27, 226
LpnPI CCDG 8 cut(s) 20, 62, 92, 152, 179, 293, 321, 443
MaeI CTAG 2 cut(s) 206, 251
MaeII ACGT 2 cut(s) 158, 414
MaeIII GTNAC 3 cut(s) 215, 316, 338
MalI GATC 2 cut(s) 29, 228
MboI GATC 2 cut(s) 27, 226
MboII GAAGA 2 cut(s) 283, 310
MluCI AATT 2 cut(s) 277, 348
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 1 cut(s) 434
MseI TTAA 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 2 cut(s) 12, 360
MvnI CGCG 1 cut(s) 53
NciI CCSGG 1 cut(s) 140
NdeII GATC 2 cut(s) 27, 226
NlaIII CATG 2 cut(s) 136, 409
NmuCI GTSAC 3 cut(s) 215, 316, 338
PagI TCATGA 1 cut(s) 132
PctI GAATGC 2 cut(s) 12, 360
PfeI GAWTC 2 cut(s) 332, 401
PflFI GACNNNGTC 1 cut(s) 221
PmaCI CACGTG 1 cut(s) 415
PmlI CACGTG 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 415
PspCI CACGTG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 2 cut(s) 22, 240
RsaNI GTAC 2 cut(s) 21, 239
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 2 cut(s) 27, 226
ScrFI CCNGG 1 cut(s) 140
SetI ASST 8 cut(s) 36, 100, 111, 161, 316, 396, 417, 425
SfcI CTRYAG 1 cut(s) 45
Sse9I AATT 2 cut(s) 277, 348
SsiI CCGC 3 cut(s) 53, 245, 328
SspMI CTAG 2 cut(s) 206, 251
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 2 cut(s) 205, 234
TaaI ACNGT 2 cut(s) 46, 344
TaiI ACGT 2 cut(s) 161, 417
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 277, 348
TfiI GAWTC 2 cut(s) 332, 401
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseFI GTSAC 3 cut(s) 215, 316, 338
Tsp45I GTSAC 3 cut(s) 215, 316, 338
TspDTI ATGAA 2 cut(s) 149, 276
TspGWI ACGGA 2 cut(s) 152, 219
Tth111I GACNNNGTC 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmaJI CCTAGG 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 2 cut(s) 206, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.