Rh2AG354500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000124
Physical Location & Seq
Forward (+)
52316593 .. 52317165
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG354500.1

Sequence Viewer

Length: 573 bp
ATGGACGAACGAGGCATTGTGATTGCGAATAAGGAAGGGGCAAGTAAGTTTTCGAGGGAAAATGATCGAATAATGACCAATTCAAAACTGTGGGAATTTAGTGCAGCCGTGAATTACATTTCAGAAGAAAAAAAAGAGGCTGTGCGGGGCATTGGCCTAGGCTATACTTTACACTTGGGATGTACTGATTTGGTACAACCGATAATTGAAGCAACAGTTAAATATGTTGATCCGTTGAATTACAAAATATTGATACACGAAATCGTGTGCTACATAAACAGGGACGAGTTTGGACGTGTAATGGGCATACACGACGGTGGAGAAGGGATTGTGCTAGGTGAGGGCCAAGAAGCAAAGGAGTATGGAAAAACAGTTTGTCCAATGTGCGATGCGGAAGGAAGAATCACAATTGAGTTGTTGACTGACATAGTAAGTAAAAGAAGAGAGGTGGACGACACTTTCAAGATTGCGTTTGCAATGTTGGCACTAACTTGTGTGATATGCCCGGGAGGAGATGATGCGGTTGACGTAGGATTGTTGCTTCCACTTATGGAAACATCAAAAATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

190

Amino Acids

20.97

Weight (kDa)

4.83

Isoelectric Point (pI)

22.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 145, 392, 521
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 2 cut(s) 184, 195
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 4 cut(s) 84, 209, 238, 463
AjiI CACGTC 1 cut(s) 296
AleI CACNNNNGTG 1 cut(s) 315
AlwI GGATC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 2 cut(s) 154, 343
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 95
AspA2I CCTAGG 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 343
AsuC2I CCSGG 2 cut(s) 506, 507
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 505
AvrII CCTAGG 1 cut(s) 157
BbvI GCAGC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 92
BcnI CCSGG 2 cut(s) 506, 507
BfaI CTAG 2 cut(s) 158, 335
BisI GCNGC 1 cut(s) 105
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 506, 507
BmeT110I CYCGRG 1 cut(s) 505
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 343
BmrFI CCNGG 2 cut(s) 506, 507
BmsI GCATC 2 cut(s) 379, 508
BpuMI CCSGG 2 cut(s) 506, 507
BsaJI CCNNGG 2 cut(s) 157, 505
Bse3DI GCAATG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 157, 505
BseGI GGATG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 483
BseRI GAGGAG 1 cut(s) 525
BseXI GCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 2 cut(s) 156, 345
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 156, 345
BsoBI CYCGRG 1 cut(s) 505
Bsp143I GATC 2 cut(s) 64, 229
BspACI CCGC 3 cut(s) 145, 392, 521
BspANI GGCC 2 cut(s) 156, 345
BspPI GGATC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 483
BssECI CCNNGG 2 cut(s) 157, 505
BssMI GATC 2 cut(s) 64, 229
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 4 cut(s) 90, 217, 317, 373
Bst6I CTCTTC 1 cut(s) 436
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 2 cut(s) 67, 232
BstMBI GATC 2 cut(s) 64, 229
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 504, 505
BstV1I GCAGC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 156, 345
BtgZI GCGATG 1 cut(s) 402
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 343
Cfr9I CCCGGG 1 cut(s) 505
Csp6I GTAC 2 cut(s) 183, 194
CviJI RGCY 5 cut(s) 107, 140, 156, 162, 345
CviKI_1 RGCY 5 cut(s) 107, 140, 156, 162, 345
CviQI GTAC 2 cut(s) 183, 194
DpnI GATC 2 cut(s) 66, 231
DpnII GATC 2 cut(s) 64, 229
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaiI YATR 8 cut(s) 165, 225, 275, 308, 363, 428, 502, 551
FaqI GGGAC 1 cut(s) 296
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 2 cut(s) 158, 335
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 2 cut(s) 156, 345
HapII CCGG 1 cut(s) 506
HincII GTYRAC 2 cut(s) 420, 526
HindII GTYRAC 2 cut(s) 420, 526
HinfI GANTC 1 cut(s) 402
HpaII CCGG 1 cut(s) 506
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 420, 451, 526
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 3 cut(s) 420, 451, 526
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 29, 317, 389
HpyCH4III ACNGT 4 cut(s) 90, 217, 317, 373
HpyCH4IV ACGT 2 cut(s) 295, 528
HpyCH4V TGCA 2 cut(s) 104, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpySE526I ACGT 2 cut(s) 295, 528
Kzo9I GATC 2 cut(s) 64, 229
LpnPI CCDG 2 cut(s) 265, 519
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 2 cut(s) 379, 508
MaeI CTAG 2 cut(s) 158, 335
MaeII ACGT 2 cut(s) 295, 528
MalI GATC 2 cut(s) 66, 231
MboI GATC 2 cut(s) 64, 229
MboII GAAGA 3 cut(s) 137, 411, 453
MfeI CAATTG 1 cut(s) 408
MluCI AATT 6 cut(s) 79, 95, 112, 204, 238, 408
MnlI CCTC 6 cut(s) 5, 48, 130, 334, 439, 503
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 2 cut(s) 506, 507
MunI CAATTG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 2 cut(s) 506, 507
NdeII GATC 2 cut(s) 64, 229
OliI CACNNNNGTG 1 cut(s) 315
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 343
RsaI GTAC 2 cut(s) 184, 195
RsaNI GTAC 2 cut(s) 183, 194
RseI CAYNNNNRTG 1 cut(s) 315
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 64, 229
Sau96I GGNCC 1 cut(s) 343
ScrFI CCNGG 2 cut(s) 506, 507
SetI ASST 4 cut(s) 298, 340, 450, 531
SfaNI GCATC 2 cut(s) 379, 508
SmaI CCCGGG 1 cut(s) 507
SmiMI CAYNNNNRTG 1 cut(s) 315
Sse9I AATT 6 cut(s) 79, 95, 112, 204, 238, 408
SsiI CCGC 3 cut(s) 145, 392, 521
SspI AATATT 1 cut(s) 249
SspMI CTAG 2 cut(s) 158, 335
StyD4I CCNGG 2 cut(s) 504, 505
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 4 cut(s) 90, 217, 317, 373
TaiI ACGT 2 cut(s) 298, 531
TaqI TCGA 2 cut(s) 53, 67
TasI AATT 6 cut(s) 79, 95, 112, 204, 238, 408
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 222
TspMI CCCGGG 1 cut(s) 505
XapI RAATTY 1 cut(s) 95
XmaI CCCGGG 1 cut(s) 505
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 2 cut(s) 158, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.