Rroxscaffold_7G00162710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000124
Physical Location & Seq
Reverse (-)
5075746 .. 5079624
3879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162710.1

Sequence Viewer

Length: 702 bp
ATGCCTACGTGGCGGCTATGTGAGACTCATAACTGGAGGTGTGAAATGGCTACCCCCTCATTACAACTTCCACATCCAGCAGATATCCCCTTCTTTGTGACGACAGTGGATACTACCGGGTCCAGAATGAAGTCTTTGAAAATACCTACTGCTTTTCGACAGCTTCATTTGGCGACCGATGATAGGAAGGAAGCAGTTCTGAATTTAGTCGGATTACCTCATAATGCATGGAAAGTGGATGTCGTTGAGGCAGACAATGAAAAGTTTTTGGGAGTAGGATGGGAGTGGTTTGTACGGCTCACTTGCGGGGTACAAGCAAGGGTGGTACTCGTCCTCAAGTACCAAGGATGTATGACATTTAGTGTCATACGGTTCGGATATAACGGCCAAGTCCTATACTTTCTTCCTTGGTTGACTGCAACCAACCCTTGGAACAAGCTGAATCAAATATATGAAACTTTTCAAGGGTTTGTCGTTACCGTACGGGGACTCGGAAACAGCCATGCATTTCCAACATATTTTGCGAAGTTTCATCTTGGCGGAAGACCCTCAAGCCCGACTTTACGAAGGCCACGAGGTGGAACATGGCCGGTAACTACAGCTGCCACAAATGGAACTCTATATGTAAGCGGGGTTATGCAAATTTCAAAACCGACAACAAATTCAATACCGGGGACTTGGTCCGCGTATTCTGGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.2

Weight (kDa)

9.73

Isoelectric Point (pI)

19.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 429, 578
AccII CGCG 1 cut(s) 686
AciI CCGC 5 cut(s) 13, 306, 540, 630, 684
AcoI YGGCCR 2 cut(s) 385, 587
AcsI RAATTY 3 cut(s) 202, 642, 661
AdeI CACNNNGTG 1 cut(s) 578
AfaI GTAC 5 cut(s) 294, 312, 327, 341, 483
AfiI CCNNNNNNNGG 3 cut(s) 183, 429, 578
AgsI TTSAA 4 cut(s) 139, 464, 648, 666
AluBI AGCT 3 cut(s) 163, 439, 602
AluI AGCT 3 cut(s) 163, 439, 602
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 3 cut(s) 385, 569, 587
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 3 cut(s) 202, 642, 661
Asp700I GAANNNNTTC 2 cut(s) 195, 459
AspS9I GGNCC 2 cut(s) 120, 681
AsuC2I CCSGG 2 cut(s) 118, 672
AvaII GGWCC 2 cut(s) 120, 681
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 550
BbvI GCAGC 1 cut(s) 589
BccI CCATC 1 cut(s) 273
BceAI ACGGC 2 cut(s) 311, 400
BciVI GTATCC 1 cut(s) 103
BcnI CCSGG 2 cut(s) 118, 672
BcoDI GTCTC 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 597
BfuI GTATCC 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 2 cut(s) 14, 603
BlsI GCNGC 2 cut(s) 15, 604
Bme1390I CCNGG 2 cut(s) 118, 672
Bme18I GGWCC 2 cut(s) 120, 681
BmgT120I GGNCC 2 cut(s) 120, 681
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 118, 672
BpiI GAAGAC 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 55
BpuEI CTTGAG 2 cut(s) 320, 535
BpuMI CCSGG 2 cut(s) 118, 672
BsaAI YACGTR 1 cut(s) 9
BsaJI CCNNGG 4 cut(s) 343, 407, 428, 671
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 429, 578
Bse118I RCCGGY 1 cut(s) 589
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 4 cut(s) 343, 407, 428, 671
BseGI GGATG 4 cut(s) 73, 244, 284, 353
BseLI CCNNNNNNNGG 3 cut(s) 183, 429, 578
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 589
Bsh1236I CGCG 1 cut(s) 686
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 387, 571, 589
BsiEI CGRYCG 1 cut(s) 177
BsiSI CCGG 3 cut(s) 117, 590, 671
BsiWI CGTACG 1 cut(s) 481
BslFI GGGAC 2 cut(s) 501, 688
BslI CCNNNNNNNGG 3 cut(s) 183, 429, 578
BsmAI GTCTC 1 cut(s) 17
BsmFI GGGAC 2 cut(s) 501, 688
BsnI GGCC 3 cut(s) 387, 571, 589
BspACI CCGC 5 cut(s) 13, 306, 540, 630, 684
BspANI GGCC 3 cut(s) 387, 571, 589
BspFNI CGCG 1 cut(s) 686
BspLI GGNNCC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 589
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 4 cut(s) 343, 407, 428, 671
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 3 cut(s) 343, 407, 428
Bst2BI CACGAG 1 cut(s) 573
Bst4CI ACNGT 3 cut(s) 106, 372, 481
BstBAI YACGTR 1 cut(s) 9
BstF5I GGATG 4 cut(s) 73, 244, 284, 353
BstFNI CGCG 1 cut(s) 686
BstMAI GTCTC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 116, 670
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 1 cut(s) 686
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 1 cut(s) 550
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 3 cut(s) 387, 571, 589
BtsCI GGATG 4 cut(s) 73, 244, 284, 353
BtsIMutI CAGTG 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 2 cut(s) 120, 681
Csp6I GTAC 5 cut(s) 293, 311, 326, 340, 482
CviAII CATG 3 cut(s) 228, 503, 585
CviQI GTAC 5 cut(s) 293, 311, 326, 340, 482
DraIII CACNNNGTG 1 cut(s) 578
EaeI YGGCCR 2 cut(s) 385, 587
EciI GGCGGA 1 cut(s) 555
Eco130I CCWWGG 3 cut(s) 343, 407, 428
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 120, 681
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 3 cut(s) 343, 407, 428
EcoT22I ATGCAT 2 cut(s) 229, 508
ErhI CCWWGG 3 cut(s) 343, 407, 428
FaeI CATG 3 cut(s) 231, 506, 588
FalI AAGNNNNNCTT 2 cut(s) 544, 576
FaqI GGGAC 2 cut(s) 501, 688
FatI CATG 3 cut(s) 227, 502, 584
FauI CCCGC 2 cut(s) 299, 623
Fnu4HI GCNGC 2 cut(s) 14, 603
FokI GGATG 4 cut(s) 60, 251, 291, 360
Fsp4HI GCNGC 2 cut(s) 14, 603
GluI GCNGC 2 cut(s) 14, 603
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 3 cut(s) 387, 571, 589
HapII CCGG 3 cut(s) 117, 590, 671
Hin1II CATG 3 cut(s) 231, 506, 588
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 3 cut(s) 25, 442, 489
HpaII CCGG 3 cut(s) 117, 590, 671
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 4 cut(s) 201, 212, 377, 494
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 100, 181, 561
HpyCH4III ACNGT 3 cut(s) 106, 372, 481
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 227, 419, 506, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 3 cut(s) 231, 506, 588
LpnPI CCDG 7 cut(s) 19, 90, 130, 136, 603, 678, 684
Lsp1109I GCAGC 1 cut(s) 589
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 3 cut(s) 97, 475, 592
MboII GAAGA 2 cut(s) 395, 555
MluCI AATT 3 cut(s) 202, 642, 661
MlyI GAGTC 2 cut(s) 19, 483
MmeI TCCRAC 2 cut(s) 190, 536
MnlI CCTC 7 cut(s) 30, 67, 228, 241, 344, 559, 569
Mph1103I ATGCAT 2 cut(s) 229, 508
MroXI GAANNNNTTC 2 cut(s) 195, 459
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 3 cut(s) 117, 590, 671
MspR9I CCNGG 2 cut(s) 118, 672
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 2 cut(s) 118, 672
NlaIII CATG 3 cut(s) 231, 506, 588
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 2 cut(s) 229, 508
PcsI WCGNNNNNNNCGW 1 cut(s) 571
PdmI GAANNNNTTC 2 cut(s) 195, 459
PfeI GAWTC 1 cut(s) 442
Pfl23II CGTACG 1 cut(s) 481
PflFI GACNNNGTC 1 cut(s) 679
PflMI CCANNNNNTGG 2 cut(s) 429, 578
PkrI GCNGC 2 cut(s) 15, 604
PleI GAGTC 2 cut(s) 19, 483
PpsI GAGTC 2 cut(s) 19, 483
Ppu21I YACGTR 1 cut(s) 9
PspLI CGTACG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 120, 681
PsyI GACNNNGTC 1 cut(s) 679
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 5 cut(s) 294, 312, 327, 341, 483
RsaNI GTAC 5 cut(s) 293, 311, 326, 340, 482
SatI GCNGC 2 cut(s) 14, 603
Sau96I GGNCC 2 cut(s) 120, 681
SchI GAGTC 2 cut(s) 19, 483
ScrFI CCNGG 2 cut(s) 118, 672
SetI ASST 9 cut(s) 11, 41, 148, 165, 220, 441, 580, 604, 701
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 2 cut(s) 120, 681
SmlI CTYRAG 2 cut(s) 335, 550
SmoI CTYRAG 2 cut(s) 335, 550
Sse9I AATT 3 cut(s) 202, 642, 661
SsiI CCGC 5 cut(s) 13, 306, 540, 630, 684
StyD4I CCNGG 2 cut(s) 116, 670
StyI CCWWGG 3 cut(s) 343, 407, 428
TaaI ACNGT 3 cut(s) 106, 372, 481
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 157
TaqII GACCGA 1 cut(s) 191
TasI AATT 3 cut(s) 202, 642, 661
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 1 cut(s) 442
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 5 cut(s) 143, 155, 273, 468, 521
TspRI CASTG 1 cut(s) 111
Tth111I GACNNNGTC 1 cut(s) 679
Van91I CCANNNNNTGG 2 cut(s) 429, 578
VpaK11BI GGWCC 2 cut(s) 120, 681
XapI RAATTY 3 cut(s) 202, 642, 661
XmnI GAANNNNTTC 2 cut(s) 195, 459
Zsp2I ATGCAT 2 cut(s) 229, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.