FvH4_4g09443

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000124
Physical Location & Seq
Reverse (-)
11170281 .. 11173139
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09443.t1

Sequence Viewer

Length: 1941 bp
ATGAGCGCGCGGCGAGGATCTCTCTTCCACTCCCCTTGTGCCACACCTCCTCGACTGACATTGGAGTCGGTGGCGAGATCAGATCTTGCTGACTTCGTCGCCACTGTAGCCGGTTTATTGGAAGCGAAGGTGGCCGCTGTTACAGAGTTGGGGTGGGACTCCCTCCTCAACATCAATTGTCCTCGCCTCGTCGGTCCTATATGGAGACTGATGATCAATGGGACTCACGTGTTGAACAAAATAGTCATTGTGCTCGGACATGAGTTTGAGCTCAACGGGGCCTCCTTTGAGCGTCTCATAGGAATATGGGACGGGGATTGCGACTTCGATCTGGGTGGTACCACAGATACCACCGAGTATGGGTTGTTGGTACTATGCCCGACGACGTCTTGTGATGTTGACCCGTCCCTCATCCTGCCTCTTCTCGAGACAGGCCACATCAGACGAAAGAACTGGGCATCTTTCTGTGTTAGAAGGTTGTTGGATGCCGTCAGCGCCCAGATAGAGAGCTGTAAGAGGCAAGTCGGCGGGTGTCTACTCCCTGTTGAGTTACTAGATAAGAACAAGCGCGTCAAGACCTCTACCAATTCCTCCTCCGACCATGACGGAGCCATGAAAGGGTTTGCCATAGGGCACTCGGTTGACGAGGACATATTCGAGTTAAAGCTTCAAATGGGGAGGGTCAAGGACGATGTGTGGAATCTAAGTGAAAAACTTGGAAAGATTCAGCCAGAACTGGCTCTTCTGTCGGTGCGAGTGGAGGCAATAGCAAACCAGATCATTTTAATGAGCGAAGACTGTGTGAAGATGGTAAAGGCCCAATTGCTGGTGTCGTTGGGCGGCAAGGGGAACCGGTGCCACTACCAGACAGTGCAGACTCCACTGAAGAGGTGCCGAAAAGGAAATGGACGTTCGGCCATTGAGGCTGGCTGGATTACCGAAACTGTGGATGCACAGGAGCAGGTTAAGGAATTGAGTAAAGTAACTAGGGCTGCTTCAGCCAGCTCCAGCAGTCCGGGCGCACCTCTTGAGAAGACAAGAAGATCAGGAAAGGAAGGGCTTTTCCAGTCGGCTTTATCTGCCCATCAAAGGTCATTGTTCACATATGCAGTCAAGCACAAGGCTACTAAAGACCGTCAGATGAACCGCAAACCAAGAAGTCCCTACGGACCGCTGATGATGGCTATAACCAGCGACGATAACCTTATGATAAATTACGCCATGGCGGAGACGTCCACTGAGGCTGAGGGAAGGGTTCTGCTCGCCTCAACTGGGGAAGGGTGGGAAATATTGAAAAGGAAGGATATTTCATGCCTTGCGCCTGGGAAAATGGTGGACAACTACGTCATCGATTACGCAGCACTGGCCCTTTCCAAGGAGTGTGATGAACTATGGCATTTTCCAACAAACTTTGCTGAGAAGGCCTTGAGCCTAAGTGGAAGTAAGAACACTGACTTGTGGGTGGAGGAGACCAAAATGGTACGGACTGGAGAGGTGGGATGGAAAGCTGACCCAGTGCAAGAAGTCAGGGGGCACTGGATTCTCCTACTTGTAGACATGGACAAAAGGACTGTTGAGGTCTGGGACAACGCCCCGTTTGTCTTTTCAAAGACGACTAGTTGGAATATTGTGTCTAAAACGTCTGAGCCTTGTGGTGCGCTAAAGCAGGAGAATGACGTAGACTGCGATTTGATTGTGTCTCTCAACATGATCTATTACAGATCCAACTGGCACAAGGCGGAAGGGTCTAATGAATATCGGGCGAGGCTGCTGCTCAAGTGCCTCACCTCCCCCATGAACGAAATGTGGAGGAGAGAGATGCTTGAGGCTACCAGGGTCTTTGTTGCATCAAAGACACCTGACCCTGGTAACATGTTTGAAGATTTTGAGATTCATGACCTCAACGGGGGTGGATTTCCATCTGCTATGTTCTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

647

Amino Acids

71.74

Weight (kDa)

6.4

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 64, 1343
AatII GACGTC 2 cut(s) 389, 1235
Acc36I ACCTGC 1 cut(s) 952
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 3 cut(s) 338, 855, 891
AccB7I CCANNNNNTGG 1 cut(s) 826
AccI GTMKAC 3 cut(s) 535, 1554, 1680
AccII CGCG 3 cut(s) 8, 10, 570
AciI CCGC 8 cut(s) 10, 135, 528, 840, 1147, 1172, 1226, 1739
AclWI GGATC 2 cut(s) 25, 1716
AcoI YGGCCR 2 cut(s) 132, 915
AcuI CTGAAG 2 cut(s) 905, 981
AcvI CACGTG 1 cut(s) 229
AcyI GRCGYC 2 cut(s) 386, 1232
AfaI GTAC 3 cut(s) 340, 372, 1482
AfiI CCNNNNNNNGG 8 cut(s) 360, 618, 826, 1089, 1272, 1375, 1865, 1906
AflIII ACRYGT 2 cut(s) 228, 1872
AgeI ACCGGT 1 cut(s) 852
AgsI TTSAA 5 cut(s) 235, 671, 1294, 1608, 1880
AhlI ACTAGT 1 cut(s) 1616
AjnI CCWGG 3 cut(s) 1321, 1832, 1864
AluBI AGCT 5 cut(s) 271, 510, 667, 1005, 1508
AluI AGCT 5 cut(s) 271, 510, 667, 1005, 1508
Alw21I GWGCWC 2 cut(s) 255, 273
Alw26I GTCTC 6 cut(s) 199, 299, 422, 1223, 1463, 1704
AlwI GGATC 2 cut(s) 25, 1716
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 7 cut(s) 132, 279, 433, 816, 915, 1365, 1422
ApeKI GCWGC 4 cut(s) 992, 1358, 1768, 1771
AsiGI ACCGGT 1 cut(s) 852
Asp718I GGTACC 1 cut(s) 338
AspLEI GCGC 7 cut(s) 8, 10, 497, 570, 1022, 1321, 1660
AspS9I GGNCC 5 cut(s) 194, 279, 817, 1169, 1366
AsuC2I CCSGG 1 cut(s) 1017
AsuHPI GGTGA 1 cut(s) 1777
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 2 cut(s) 194, 1169
BaeGI GKGCMC 2 cut(s) 636, 1536
BanI GGYRCC 3 cut(s) 338, 855, 891
BanII GRGCYC 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 801, 1040
Bbv12I GWGCWC 2 cut(s) 255, 273
BbvCI CCTCAGC 1 cut(s) 1245
BbvI GCAGC 4 cut(s) 979, 1370, 1755, 1758
BccI CCATC 5 cut(s) 802, 1092, 1174, 1494, 1927
BceAI ACGGC 1 cut(s) 473
BcgI CGANNNNNNTGC 2 cut(s) 1753, 1787
BciT130I CCWGG 3 cut(s) 1323, 1834, 1866
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 1017
BcoDI GTCTC 6 cut(s) 199, 299, 422, 1223, 1463, 1704
BcuI ACTAGT 1 cut(s) 1616
BfaI CTAG 3 cut(s) 554, 987, 1617
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 952
BglI GCCNNNNNGGC 1 cut(s) 923
BglII AGATCT 1 cut(s) 82
BisI GCNGC 7 cut(s) 11, 135, 841, 993, 1359, 1769, 1772
BlsI GCNGC 7 cut(s) 12, 136, 842, 994, 1360, 1770, 1773
Bme1390I CCNGG 4 cut(s) 1017, 1323, 1834, 1866
Bme18I GGWCC 2 cut(s) 194, 1169
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 5 cut(s) 194, 279, 817, 1169, 1366
BmiI GGNNCC 6 cut(s) 280, 340, 610, 851, 857, 893
BmrFI CCNGG 4 cut(s) 1017, 1323, 1834, 1866
BmrI ACTGGG 3 cut(s) 463, 1281, 1508
BmsI GCATC 5 cut(s) 467, 475, 940, 1809, 1856
BmuI ACTGGG 3 cut(s) 463, 1281, 1508
BpiI GAAGAC 2 cut(s) 801, 1040
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 991, 1509
Bpu10I CCTNAGC 1 cut(s) 1245
BpuEI CTTGAG 4 cut(s) 1049, 1447, 1760, 1844
BpuMI CCSGG 1 cut(s) 1017
Bsa29I ATCGAT 1 cut(s) 1350
BsaAI YACGTR 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 1918
BsaHI GRCGYC 2 cut(s) 386, 1232
BsaI GGTCTC 1 cut(s) 1463
BsaJI CCNNGG 5 cut(s) 1221, 1322, 1374, 1833, 1864
BsaWI WCCGGW 1 cut(s) 852
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 8 cut(s) 360, 618, 826, 1089, 1272, 1375, 1865, 1906
Bse118I RCCGGY 2 cut(s) 110, 852
Bse1I ACTGG 9 cut(s) 458, 741, 1066, 1276, 1368, 1492, 1514, 1541, 1733
Bse8I GATNNNNATC 1 cut(s) 1918
BseBI CCWGG 3 cut(s) 1323, 1834, 1866
BseCI ATCGAT 1 cut(s) 1350
BseDI CCNNGG 5 cut(s) 1221, 1322, 1374, 1833, 1864
BseGI GGATG 4 cut(s) 411, 490, 955, 1505
BseJI GATNNNNATC 1 cut(s) 1918
BseLI CCNNNNNNNGG 8 cut(s) 360, 618, 826, 1089, 1272, 1375, 1865, 1906
BseMII CTCAG 4 cut(s) 1230, 1236, 1407, 1635
BseNI ACTGG 9 cut(s) 458, 741, 1066, 1276, 1368, 1492, 1514, 1541, 1733
BsePI GCGCGC 1 cut(s) 6
BseRI GAGGAG 5 cut(s) 39, 155, 583, 1481, 1825
BseSI GKGCMC 2 cut(s) 636, 1536
BseXI GCAGC 4 cut(s) 979, 1370, 1755, 1758
BsgI GTGCAG 1 cut(s) 893
Bsh1236I CGCG 3 cut(s) 8, 10, 570
BshFI GGCC 7 cut(s) 134, 281, 435, 818, 917, 1367, 1424
BshNI GGYRCC 3 cut(s) 338, 855, 891
BshTI ACCGGT 1 cut(s) 852
BshVI ATCGAT 1 cut(s) 1350
BsiHKAI GWGCWC 2 cut(s) 255, 273
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 3 cut(s) 111, 853, 1016
BslFI GGGAC 6 cut(s) 170, 235, 323, 391, 1146, 1598
BslI CCNNNNNNNGG 8 cut(s) 360, 618, 826, 1089, 1272, 1375, 1865, 1906
BsmAI GTCTC 6 cut(s) 199, 299, 422, 1223, 1463, 1704
BsmBI CGTCTC 2 cut(s) 299, 1223
BsmFI GGGAC 6 cut(s) 170, 235, 323, 391, 1146, 1598
BsnI GGCC 7 cut(s) 134, 281, 435, 818, 917, 1367, 1424
Bso31I GGTCTC 1 cut(s) 1463
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 4 cut(s) 255, 273, 636, 1536
Bsp143I GATC 9 cut(s) 17, 77, 82, 213, 328, 777, 1043, 1710, 1721
Bsp19I CCATGG 1 cut(s) 1221
BspACI CCGC 8 cut(s) 10, 135, 528, 840, 1147, 1172, 1226, 1739
BspANI GGCC 7 cut(s) 134, 281, 435, 818, 917, 1367, 1424
BspCNI CTCAG 4 cut(s) 1231, 1237, 1408, 1636
BspDI ATCGAT 1 cut(s) 1350
BspFNI CGCG 3 cut(s) 8, 10, 570
BspHI TCATGA 1 cut(s) 1894
BspLI GGNNCC 6 cut(s) 280, 340, 610, 851, 857, 893
BspMI ACCTGC 1 cut(s) 952
BspPI GGATC 2 cut(s) 25, 1716
BspQI GCTCTTC 1 cut(s) 747
BspT107I GGYRCC 3 cut(s) 338, 855, 891
BspTNI GGTCTC 1 cut(s) 1463
BsrFI RCCGGY 2 cut(s) 110, 852
BsrI ACTGG 9 cut(s) 458, 741, 1066, 1276, 1368, 1492, 1514, 1541, 1733
BssAI RCCGGY 2 cut(s) 110, 852
BssECI CCNNGG 5 cut(s) 1221, 1322, 1374, 1833, 1864
BssHII GCGCGC 1 cut(s) 6
BssMI GATC 9 cut(s) 17, 77, 82, 213, 328, 777, 1043, 1710, 1721
BssNI GRCGYC 2 cut(s) 386, 1232
BssT1I CCWWGG 2 cut(s) 1221, 1374
Bst2UI CCWGG 3 cut(s) 1323, 1834, 1866
Bst4CI ACNGT 6 cut(s) 106, 800, 871, 946, 1136, 1573
Bst6I CTCTTC 4 cut(s) 29, 426, 747, 881
BstACI GRCGYC 2 cut(s) 386, 1232
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 4 cut(s) 8, 928, 1003, 1263
BstDEI CTNAG 6 cut(s) 704, 1239, 1245, 1416, 1433, 1644
BstDSI CCRYGG 1 cut(s) 1221
BstENI CCTNNNNNAGG 1 cut(s) 1373
BstF5I GGATG 4 cut(s) 411, 490, 955, 1505
BstFNI CGCG 3 cut(s) 8, 10, 570
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 7 cut(s) 8, 10, 497, 570, 1022, 1321, 1660
BstKTI GATC 9 cut(s) 20, 80, 85, 216, 331, 780, 1046, 1713, 1724
BstMAI GTCTC 6 cut(s) 199, 299, 422, 1223, 1463, 1704
BstMBI GATC 9 cut(s) 17, 77, 82, 213, 328, 777, 1043, 1710, 1721
BstMWI GCNNNNNNNGC 9 cut(s) 107, 131, 494, 923, 998, 1017, 1079, 1364, 1421
BstNI CCWGG 3 cut(s) 1323, 1834, 1866
BstNSI RCATGY 1 cut(s) 1876
BstSCI CCNGG 4 cut(s) 1015, 1321, 1832, 1864
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 2 cut(s) 636, 1536
BstUI CGCG 3 cut(s) 8, 10, 570
BstV1I GCAGC 4 cut(s) 979, 1370, 1755, 1758
BstV2I GAAGAC 2 cut(s) 801, 1040
BstX2I RGATCY 3 cut(s) 17, 82, 1721
BstYI RGATCY 3 cut(s) 17, 82, 1721
Bsu15I ATCGAT 1 cut(s) 1350
BsuRI GGCC 7 cut(s) 134, 281, 435, 818, 917, 1367, 1424
BsuTUI ATCGAT 1 cut(s) 1350
BtgI CCRYGG 1 cut(s) 1221
BtsCI GGATG 4 cut(s) 411, 490, 955, 1505
BtsIMutI CAGTG 8 cut(s) 102, 876, 881, 1236, 1361, 1449, 1521, 1534
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 4 cut(s) 8, 928, 1003, 1263
CciI TCATGA 1 cut(s) 1894
CfoI GCGC 7 cut(s) 8, 10, 497, 570, 1022, 1321, 1660
Cfr10I RCCGGY 2 cut(s) 110, 852
Cfr13I GGNCC 5 cut(s) 194, 279, 817, 1169, 1366
ClaI ATCGAT 1 cut(s) 1350
CpoI CGGWCCG 1 cut(s) 1169
CseI GACGC 2 cut(s) 281, 559
Csp6I GTAC 3 cut(s) 339, 371, 1481
CspAI ACCGGT 1 cut(s) 852
CspCI CAANNNNNGTGG 4 cut(s) 17, 52, 1891, 1926
CspI CGGWCCG 1 cut(s) 1169
CviQI GTAC 3 cut(s) 339, 371, 1481
DdeI CTNAG 6 cut(s) 704, 1239, 1245, 1416, 1433, 1644
DpnI GATC 9 cut(s) 19, 79, 84, 215, 330, 779, 1045, 1712, 1723
DpnII GATC 9 cut(s) 17, 77, 82, 213, 328, 777, 1043, 1710, 1721
DrdI GACNNNNNNGTC 2 cut(s) 64, 1343
DseDI GACNNNNNNGTC 2 cut(s) 64, 1343
EaeI YGGCCR 2 cut(s) 132, 915
Eam1104I CTCTTC 4 cut(s) 29, 426, 747, 881
EarI CTCTTC 4 cut(s) 29, 426, 747, 881
EciI GGCGGA 2 cut(s) 1241, 1754
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 1221, 1374
Eco147I AGGCCT 1 cut(s) 1424
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 1463
Eco47I GGWCC 2 cut(s) 194, 1169
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 905, 981
Eco72I CACGTG 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 1373
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 3 cut(s) 1321, 1832, 1864
EcoT14I CCWWGG 2 cut(s) 1221, 1374
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 2 cut(s) 1221, 1374
Esp3I CGTCTC 2 cut(s) 299, 1223
FaqI GGGAC 6 cut(s) 170, 235, 323, 391, 1146, 1598
FauI CCCGC 1 cut(s) 521
FauNDI CATATG 1 cut(s) 1105
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 3 cut(s) 535, 1554, 1680
Fnu4HI GCNGC 7 cut(s) 11, 135, 841, 993, 1359, 1769, 1772
FokI GGATG 4 cut(s) 398, 497, 962, 1512
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 7 cut(s) 11, 135, 841, 993, 1359, 1769, 1772
FspBI CTAG 3 cut(s) 554, 987, 1617
GlaI GCGC 7 cut(s) 7, 9, 496, 569, 1021, 1320, 1659
GluI GCNGC 7 cut(s) 11, 135, 841, 993, 1359, 1769, 1772
GsuI CTGGAG 2 cut(s) 991, 1509
HaeII RGCGCY 1 cut(s) 498
HaeIII GGCC 7 cut(s) 134, 281, 435, 818, 917, 1367, 1424
HapII CCGG 3 cut(s) 111, 853, 1016
HgaI GACGC 2 cut(s) 281, 559
HhaI GCGC 7 cut(s) 8, 10, 497, 570, 1022, 1321, 1660
Hin1I GRCGYC 2 cut(s) 386, 1232
Hin6I GCGC 7 cut(s) 6, 8, 495, 568, 1020, 1319, 1658
HinP1I GCGC 7 cut(s) 6, 8, 495, 568, 1020, 1319, 1658
HincII GTYRAC 2 cut(s) 400, 643
HindII GTYRAC 2 cut(s) 400, 643
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 8 cut(s) 65, 158, 223, 700, 724, 877, 1540, 1891
HpaII CCGG 3 cut(s) 111, 853, 1016
HphI GGTGA 1 cut(s) 1777
Hpy166II GTNNAC 8 cut(s) 400, 536, 643, 1101, 1236, 1336, 1555, 1681
Hpy188I TCNGA 6 cut(s) 82, 257, 443, 598, 1140, 1645
Hpy188III TCNNGA 6 cut(s) 425, 427, 574, 1028, 1047, 1895
Hpy8I GTNNAC 8 cut(s) 400, 536, 643, 1101, 1236, 1336, 1555, 1681
Hpy99I CGWCG 5 cut(s) 101, 194, 385, 388, 1199
HpyAV CCTTC 8 cut(s) 121, 468, 1049, 1245, 1271, 1294, 1414, 1736
HpyCH4III ACNGT 6 cut(s) 106, 800, 871, 946, 1136, 1573
HpyCH4IV ACGT 7 cut(s) 228, 386, 910, 1232, 1344, 1640, 1677
HpyCH4V TGCA 6 cut(s) 874, 953, 1109, 1519, 1847, 1935
HpyF10VI GCNNNNNNNGC 9 cut(s) 107, 131, 494, 923, 998, 1017, 1079, 1364, 1421
HpyF3I CTNAG 6 cut(s) 704, 1239, 1245, 1416, 1433, 1644
HpySE526I ACGT 7 cut(s) 228, 386, 910, 1232, 1344, 1640, 1677
Hsp92I GRCGYC 2 cut(s) 386, 1232
HspAI GCGC 7 cut(s) 6, 8, 495, 568, 1020, 1319, 1658
KpnI GGTACC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 9 cut(s) 17, 77, 82, 213, 328, 777, 1043, 1710, 1721
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 3 cut(s) 608, 958, 1010
Lsp1109I GCAGC 4 cut(s) 979, 1370, 1755, 1758
LweI GCATC 5 cut(s) 467, 475, 940, 1809, 1856
MaeI CTAG 3 cut(s) 554, 987, 1617
MaeII ACGT 7 cut(s) 228, 386, 910, 1232, 1344, 1640, 1677
MaeIII GTNAC 4 cut(s) 139, 549, 982, 1868
MalI GATC 9 cut(s) 19, 79, 84, 215, 330, 779, 1045, 1712, 1723
MboI GATC 9 cut(s) 17, 77, 82, 213, 328, 777, 1043, 1710, 1721
MboII GAAGA 9 cut(s) 16, 413, 734, 806, 817, 898, 1045, 1053, 1892
MfeI CAATTG 2 cut(s) 175, 821
MflI RGATCY 3 cut(s) 17, 82, 1721
MhlI GDGCHC 4 cut(s) 255, 273, 636, 1536
MluCI AATT 5 cut(s) 175, 586, 821, 971, 1213
MlyI GAGTC 4 cut(s) 74, 152, 217, 871
MmeI TCCRAC 5 cut(s) 462, 621, 1427, 1601, 1749
MseI TTAA 3 cut(s) 662, 785, 966
MslI CAYNNNNRTG 1 cut(s) 785
MspA1I CMGCKG 2 cut(s) 137, 1174
MspI CCGG 3 cut(s) 111, 853, 1016
MspR9I CCNGG 4 cut(s) 1017, 1323, 1834, 1866
MunI CAATTG 2 cut(s) 175, 821
MvaI CCWGG 3 cut(s) 1323, 1834, 1866
MvnI CGCG 3 cut(s) 8, 10, 570
MwoI GCNNNNNNNGC 9 cut(s) 107, 131, 494, 923, 998, 1017, 1079, 1364, 1421
NciI CCSGG 1 cut(s) 1017
NcoI CCATGG 1 cut(s) 1221
NdeI CATATG 1 cut(s) 1105
NdeII GATC 9 cut(s) 17, 77, 82, 213, 328, 777, 1043, 1710, 1721
NlaIV GGNNCC 6 cut(s) 280, 340, 610, 851, 857, 893
NspI RCATGY 1 cut(s) 1876
PaeR7I CTCGAG 1 cut(s) 425
PagI TCATGA 1 cut(s) 1894
PauI GCGCGC 1 cut(s) 6
PceI AGGCCT 1 cut(s) 1424
PciI ACATGT 1 cut(s) 1872
PciSI GCTCTTC 1 cut(s) 747
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 1683
PfeI GAWTC 4 cut(s) 700, 724, 1540, 1891
PflFI GACNNNGTC 2 cut(s) 95, 385
PflMI CCANNNNNTGG 1 cut(s) 826
PinAI ACCGGT 1 cut(s) 852
PkrI GCNGC 7 cut(s) 12, 136, 842, 994, 1360, 1770, 1773
PleI GAGTC 4 cut(s) 73, 152, 217, 871
PmaCI CACGTG 1 cut(s) 229
PmlI CACGTG 1 cut(s) 229
PpsI GAGTC 4 cut(s) 73, 152, 217, 871
Ppu21I YACGTR 1 cut(s) 229
PscI ACATGT 1 cut(s) 1872
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 3 cut(s) 1321, 1832, 1864
PspCI CACGTG 1 cut(s) 229
PspGI CCWGG 3 cut(s) 1321, 1832, 1864
PspN4I GGNNCC 6 cut(s) 280, 340, 610, 851, 857, 893
PspPI GGNCC 5 cut(s) 194, 279, 817, 1169, 1366
PsuI RGATCY 3 cut(s) 17, 82, 1721
PsyI GACNNNGTC 2 cut(s) 95, 385
PteI GCGCGC 1 cut(s) 6
RsaI GTAC 3 cut(s) 340, 372, 1482
RsaNI GTAC 3 cut(s) 339, 371, 1481
RseI CAYNNNNRTG 1 cut(s) 785
Rsr2I CGGWCCG 1 cut(s) 1169
RsrII CGGWCCG 1 cut(s) 1169
SacI GAGCTC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 3 cut(s) 662, 785, 966
SatI GCNGC 7 cut(s) 11, 135, 841, 993, 1359, 1769, 1772
Sau3AI GATC 9 cut(s) 17, 77, 82, 213, 328, 777, 1043, 1710, 1721
Sau96I GGNCC 5 cut(s) 194, 279, 817, 1169, 1366
SchI GAGTC 4 cut(s) 74, 152, 217, 871
ScrFI CCNGG 4 cut(s) 1017, 1323, 1834, 1866
SduI GDGCHC 4 cut(s) 255, 273, 636, 1536
SfaNI GCATC 5 cut(s) 467, 475, 940, 1809, 1856
SfcI CTRYAG 1 cut(s) 105
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 2 cut(s) 194, 1169
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 5 cut(s) 425, 1028, 1426, 1775, 1823
SmoI CTYRAG 5 cut(s) 425, 1028, 1426, 1775, 1823
SpeI ACTAGT 1 cut(s) 1616
Sse9I AATT 5 cut(s) 175, 586, 821, 971, 1213
SseBI AGGCCT 1 cut(s) 1424
SsiI CCGC 8 cut(s) 10, 135, 528, 840, 1147, 1172, 1226, 1739
SspI AATATT 2 cut(s) 1290, 1627
SspMI CTAG 3 cut(s) 554, 987, 1617
SstI GAGCTC 1 cut(s) 273
StuI AGGCCT 1 cut(s) 1424
StyD4I CCNGG 4 cut(s) 1015, 1321, 1832, 1864
StyI CCWWGG 2 cut(s) 1221, 1374
TaaI ACNGT 6 cut(s) 106, 800, 871, 946, 1136, 1573
TaiI ACGT 7 cut(s) 231, 389, 913, 1235, 1347, 1643, 1680
TaqI TCGA 5 cut(s) 52, 327, 426, 657, 1350
TaqII GACCGA 1 cut(s) 182
TasI AATT 5 cut(s) 175, 586, 821, 971, 1213
TauI GCSGC 3 cut(s) 13, 137, 843
TfiI GAWTC 4 cut(s) 700, 724, 1540, 1891
Tru1I TTAA 3 cut(s) 662, 785, 966
Tru9I TTAA 3 cut(s) 662, 785, 966
TscAI CASTG 8 cut(s) 109, 876, 888, 1243, 1368, 1456, 1521, 1541
TseI GCWGC 4 cut(s) 992, 1358, 1768, 1771
TspDTI ATGAA 7 cut(s) 629, 1157, 1299, 1401, 1767, 1811, 1883
TspGWI ACGGA 3 cut(s) 621, 1182, 1498
TspRI CASTG 8 cut(s) 109, 876, 888, 1243, 1368, 1456, 1521, 1541
Tth111I GACNNNGTC 2 cut(s) 95, 385
Van91I CCANNNNNTGG 1 cut(s) 826
VpaK11BI GGWCC 2 cut(s) 194, 1169
XagI CCTNNNNNAGG 1 cut(s) 1373
XceI RCATGY 1 cut(s) 1876
XhoI CTCGAG 1 cut(s) 425
XmiI GTMKAC 3 cut(s) 535, 1554, 1680
XspI CTAG 3 cut(s) 554, 987, 1617
ZraI GACGTC 2 cut(s) 387, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.