Rmu_co8419903.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8419903.1
OG0000124
Physical Location & Seq
Reverse (-)
2 .. 634
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8419903.1_g000001.1.cds

Sequence Viewer

Length: 570 bp
atgaattgggctgatgtggacgacatgttccgtattgcatttacaatgcttgcattggttctggtgctatgcctaggcacgggtgacaatgtcgatccatccttggtactcccgctactagagatgggggagattgggaagaaaaattgggcttcattctatgtgaagacattactggaagctgtgactactcagcgggaatctggtgactatgtaattggtgggtgcgttctgttcttgcaaaccctttattttgataaggttggcgattccatgtttcacgtggataggtgccttggaggcttcaagagcccaattgttatgatggaaaggagtaaccgttccaagatggcaacaaagtgcgatgtagatgacggtgagtttgggcttggactgaggaagggggttcatgaggatatttttgatatcaagctggacatgatgggtgttaagggtgacatcaacaggcttactgggattgttggaaggctgcaacctgacatggccgagctgacaaggaaagtggacattatatcacagcagttacgtagttggaagaaagaagctgca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

5.25

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 291
AciI CCGC 2 cut(s) 113, 196
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 504
AcvI CACGTG 1 cut(s) 283
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 307
AloI GAACNNNNNNTCC 4 cut(s) 11, 43, 325, 357
AluBI AGCT 4 cut(s) 182, 433, 511, 566
AluI AGCT 4 cut(s) 182, 433, 511, 566
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 490, 566
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspA2I CCTAGG 1 cut(s) 73
AsuHPI GGTGA 4 cut(s) 95, 218, 389, 467
AvrII CCTAGG 1 cut(s) 73
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 477, 553
BccI CCATC 5 cut(s) 106, 118, 319, 343, 436
BfaI CTAG 2 cut(s) 74, 119
BglI GCCNNNNNGGC 1 cut(s) 300
BisI GCNGC 2 cut(s) 491, 567
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 2 cut(s) 492, 568
BmiI GGNNCC 1 cut(s) 293
BmrI ACTGGG 1 cut(s) 483
BmuI ACTGGG 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 173
BsaAI YACGTR 2 cut(s) 283, 548
BsaJI CCNNGG 3 cut(s) 73, 102, 295
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 180, 478
BseDI CCNNGG 3 cut(s) 73, 102, 295
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 206, 386
BseNI ACTGG 2 cut(s) 180, 478
BseXI GCAGC 2 cut(s) 477, 553
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 79
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 2 cut(s) 113, 196
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 2 cut(s) 205, 387
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 293
BspPI GGATC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 291
BsrI ACTGG 2 cut(s) 180, 478
BssECI CCNNGG 3 cut(s) 73, 102, 295
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 3 cut(s) 73, 102, 295
Bst4CI ACNGT 2 cut(s) 341, 377
BstBAI YACGTR 2 cut(s) 283, 548
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 192, 395
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 300, 309
BstNSI RCATGY 1 cut(s) 28
BstSNI TACGTA 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 477, 553
BstV2I GAAGAC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 506
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 51
CciI TCATGA 1 cut(s) 409
Csp6I GTAC 1 cut(s) 107
CspCI CAANNNNNGTGG 2 cut(s) 504, 539
CviAII CATG 5 cut(s) 25, 274, 410, 439, 502
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 2 cut(s) 192, 395
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 504
Eco105I TACGTA 1 cut(s) 548
Eco130I CCWWGG 3 cut(s) 73, 102, 295
Eco24I GRGCYC 1 cut(s) 314
Eco32I GATATC 1 cut(s) 427
Eco72I CACGTG 1 cut(s) 283
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 3 cut(s) 73, 102, 295
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 3 cut(s) 73, 102, 295
FaeI CATG 5 cut(s) 28, 277, 413, 442, 505
FatI CATG 5 cut(s) 24, 273, 409, 438, 501
FauI CCCGC 2 cut(s) 120, 189
Fnu4HI GCNGC 2 cut(s) 491, 567
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 491, 567
FspBI CTAG 2 cut(s) 74, 119
GluI GCNGC 2 cut(s) 491, 567
HaeIII GGCC 1 cut(s) 506
Hin1II CATG 5 cut(s) 28, 277, 413, 442, 505
HinfI GANTC 2 cut(s) 200, 269
HphI GGTGA 4 cut(s) 95, 218, 389, 467
Hpy166II GTNNAC 2 cut(s) 19, 526
Hpy188III TCNNGA 2 cut(s) 307, 410
Hpy8I GTNNAC 2 cut(s) 19, 526
HpyAV CCTTC 2 cut(s) 394, 480
HpyCH4III ACNGT 2 cut(s) 341, 377
HpyCH4IV ACGT 2 cut(s) 282, 547
HpyCH4V TGCA 5 cut(s) 38, 53, 241, 493, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 300, 309
HpyF3I CTNAG 2 cut(s) 192, 395
HpySE526I ACGT 2 cut(s) 282, 547
Hsp92II CATG 5 cut(s) 28, 277, 413, 442, 505
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 47, 161, 189, 419, 451, 459, 510
Lsp1109I GCAGC 2 cut(s) 477, 553
MaeI CTAG 2 cut(s) 74, 119
MaeII ACGT 2 cut(s) 282, 547
MaeIII GTNAC 6 cut(s) 83, 184, 206, 335, 455, 543
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 3 cut(s) 151, 178, 568
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 4 cut(s) 4, 145, 216, 315
MmeI TCCRAC 2 cut(s) 463, 533
MnlI CCTC 3 cut(s) 293, 390, 406
MseI TTAA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 196
MunI CAATTG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 300, 309
NdeII GATC 1 cut(s) 94
NlaIII CATG 5 cut(s) 28, 277, 413, 442, 505
NlaIV GGNNCC 1 cut(s) 293
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 4 cut(s) 83, 184, 206, 455
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 409
PciI ACATGT 1 cut(s) 24
PfeI GAWTC 2 cut(s) 200, 269
PflFI GACNNNGTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 492, 568
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
Ppu21I YACGTR 2 cut(s) 283, 548
PscI ACATGT 1 cut(s) 24
PspCI CACGTG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 293
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 2 cut(s) 491, 567
Sau3AI GATC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 314
SetI ASST 9 cut(s) 184, 264, 285, 293, 435, 499, 513, 550, 568
SnaBI TACGTA 1 cut(s) 548
Sse9I AATT 4 cut(s) 4, 145, 216, 315
SsiI CCGC 2 cut(s) 113, 196
SspMI CTAG 2 cut(s) 74, 119
StyI CCWWGG 3 cut(s) 73, 102, 295
TaaI ACNGT 2 cut(s) 341, 377
TaiI ACGT 2 cut(s) 285, 550
TaqI TCGA 1 cut(s) 93
TasI AATT 4 cut(s) 4, 145, 216, 315
TfiI GAWTC 2 cut(s) 200, 269
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TseFI GTSAC 4 cut(s) 83, 184, 206, 455
TseI GCWGC 2 cut(s) 490, 566
Tsp45I GTSAC 4 cut(s) 83, 184, 206, 455
TspDTI ATGAA 3 cut(s) 17, 144, 398
TspGWI ACGGA 1 cut(s) 20
Tth111I GACNNNGTC 1 cut(s) 89
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmaJI CCTAGG 1 cut(s) 73
XspI CTAG 2 cut(s) 74, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.