Rh4CG155500

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
34280862 .. 34281616
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG155500.1

Sequence Viewer

Length: 486 bp
ATGGGTATGAAAATGCAGATATTCTTACCTGTGCATGACGGTTCAATCAAGGATGGGCATTGGATTCTCATTGTGGTTGACATGGTCACAAAGGTTGCTGAAGTATGGGATAGCGGACCAGTACTACAACCATCGACAATGGAAAACATTTTGCTTGTGCTGAGACACATAAACTGGGTAATGTGGTTTGATAACAGAACGCAACCTGGAAGCATGGTAAAGGTAGAAGATTTTACAATTGTTGAGGCCCCGAATGTGCCAAAGCAACAAAACGCATTTGACTGCGATGTCTACGTCATACAAAACATGCAGCATTATCGGACCGATTGGGCAAAACAGTACGACTCGGAATACCAGAGAGCAGCCATATTATTGGATTGTTTAACAGCCCCAAATAACGAGTCGGATGCAAACGTAGGAGCGGCTATCGTAAATAGTGACAATGGGGTTGAAAAAAAAGCAATGCATTATAATGGTTTGCATTAG

Protein Analysis

161

Amino Acids

18.32

Weight (kDa)

5.05

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 7 - 106 1.2e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AasI GACNNNNNNGTC 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 422
AccI GTMKAC 1 cut(s) 291
AciI CCGC 2 cut(s) 114, 422
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 2 cut(s) 123, 341
AgsI TTSAA 2 cut(s) 45, 452
AjnI CCWGG 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 157
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 310, 362
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspS9I GGNCC 3 cut(s) 116, 247, 321
AvaII GGWCC 2 cut(s) 116, 321
BbvI GCAGC 2 cut(s) 322, 374
BccI CCATC 2 cut(s) 47, 139
BcgI CGANNNNNNTGC 4 cut(s) 299, 333, 389, 423
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 157
BisI GCNGC 3 cut(s) 311, 363, 423
BlsI GCNGC 3 cut(s) 312, 364, 424
BmcAI AGTACT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 116, 321
BmgT120I GGNCC 3 cut(s) 116, 247, 321
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 119, 179
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 58, 412
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 119, 179
BseXI GCAGC 2 cut(s) 322, 374
BshFI GGCC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 1 cut(s) 248
BspACI CCGC 2 cut(s) 114, 422
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 249
BsrBI CCGCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 2 cut(s) 119, 179
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 41, 339
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 58, 412
BstMAI GTCTC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 322, 374
BstXI CCANNNNNNTGG 1 cut(s) 373
BsuRI GGCC 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 58, 412
Cfr13I GGNCC 3 cut(s) 116, 247, 321
CpoI CGGWCCG 1 cut(s) 321
Csp6I GTAC 2 cut(s) 122, 340
CspI CGGWCCG 1 cut(s) 321
CviAII CATG 4 cut(s) 35, 82, 214, 307
CviJI RGCY 4 cut(s) 248, 365, 389, 425
CviKI_1 RGCY 4 cut(s) 248, 365, 389, 425
CviQI GTAC 2 cut(s) 122, 340
DdeI CTNAG 1 cut(s) 161
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 116, 321
Eco57I CTGAAG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 468
FaeI CATG 4 cut(s) 38, 85, 217, 310
FatI CATG 4 cut(s) 34, 81, 213, 306
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 311, 363, 423
FokI GGATG 2 cut(s) 65, 419
Fsp4HI GCNGC 3 cut(s) 311, 363, 423
GluI GCNGC 3 cut(s) 311, 363, 423
HaeIII GGCC 1 cut(s) 248
Hin1II CATG 4 cut(s) 38, 85, 217, 310
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 3 cut(s) 64, 344, 401
Hpy166II GTNNAC 2 cut(s) 79, 292
Hpy188I TCNGA 3 cut(s) 321, 349, 406
Hpy8I GTNNAC 2 cut(s) 79, 292
HpyCH4III ACNGT 2 cut(s) 41, 339
HpyCH4IV ACGT 2 cut(s) 294, 414
HpyCH4V TGCA 6 cut(s) 16, 34, 310, 410, 466, 481
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 2 cut(s) 294, 414
Hsp92II CATG 4 cut(s) 38, 85, 217, 310
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 6 cut(s) 42, 132, 160, 192, 219, 368
Lsp1109I GCAGC 2 cut(s) 322, 374
LweI GCATC 1 cut(s) 397
MaeII ACGT 2 cut(s) 294, 414
MaeIII GTNAC 2 cut(s) 85, 437
MbiI CCGCTC 1 cut(s) 422
MboII GAAGA 1 cut(s) 239
MfeI CAATTG 1 cut(s) 237
MluCI AATT 1 cut(s) 237
MlyI GAGTC 2 cut(s) 338, 410
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 1 cut(s) 238
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 207
NlaIII CATG 4 cut(s) 38, 85, 217, 310
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 85, 437
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 310
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 312, 364, 424
PleI GAGTC 2 cut(s) 338, 409
PpsI GAGTC 2 cut(s) 338, 409
PsiI TTATAA 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 3 cut(s) 116, 247, 321
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 2 cut(s) 123, 341
RsaNI GTAC 2 cut(s) 122, 340
RseI CAYNNNNRTG 1 cut(s) 471
Rsr2I CGGWCCG 1 cut(s) 321
RsrII CGGWCCG 1 cut(s) 321
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 3 cut(s) 311, 363, 423
Sau96I GGNCC 3 cut(s) 116, 247, 321
ScaI AGTACT 1 cut(s) 123
SchI GAGTC 2 cut(s) 338, 410
ScrFI CCNGG 1 cut(s) 207
SetI ASST 6 cut(s) 31, 96, 208, 225, 297, 417
SfaNI GCATC 1 cut(s) 397
SinI GGWCC 2 cut(s) 116, 321
SmiMI CAYNNNNRTG 1 cut(s) 471
Sse9I AATT 1 cut(s) 237
SsiI CCGC 2 cut(s) 114, 422
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 41, 339
TaiI ACGT 2 cut(s) 297, 417
TaqI TCGA 1 cut(s) 134
TaqII GACCGA 1 cut(s) 338
TasI AATT 1 cut(s) 237
TatI WGTACW 1 cut(s) 121
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TseFI GTSAC 2 cut(s) 85, 437
TseI GCWGC 2 cut(s) 310, 362
Tsp45I GTSAC 2 cut(s) 85, 437
TspDTI ATGAA 1 cut(s) 23
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 116, 321
XceI RCATGY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.