Rmu_co8063658.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8063658.1
OG0000124
Physical Location & Seq
Forward (+)
1 .. 570
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8063658.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
cccgccatcccaaggggttgcctatacgctgccatccgcaataatagcggtccaggactgtgtctcttaaggtgggagtcaagggaggggatgatattttggcatgttgagctgactagaggcgtaggttgcatgacttttggtgaagggttgaacagatttgcatcccacaatcggctgcttgatggaaagcggttttgtgtcttcacttacaggggtggccttgagttctctgtccttgttttccacaaacacaggggtacgttgatgttgaatgtcagccaattcgctgctgtccccccaccacaacaagttccacagttgcagcaggtcgatgaacatgcagtggttcacccggggatgcaggaggtaaatgctgatgaggctcagcagaatatggacattggcggtgtagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.5

Weight (kDa)

6.69

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AciI CCGC 5 cut(s) 3, 37, 48, 193, 408
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 2 cut(s) 12, 174
AflII CTTAAG 1 cut(s) 67
AgsI TTSAA 2 cut(s) 154, 274
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 355
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 4 cut(s) 29, 178, 290, 325
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 2 cut(s) 356, 357
AsuHPI GGTGA 2 cut(s) 155, 344
AvaI CYCGRG 1 cut(s) 355
AvaII GGWCC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 4 cut(s) 16, 165, 277, 337
BccI CCATC 3 cut(s) 14, 41, 179
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 1 cut(s) 54
BcnI CCSGG 2 cut(s) 356, 357
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 4 cut(s) 30, 179, 291, 326
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 4 cut(s) 31, 180, 292, 327
Bme1390I CCNGG 3 cut(s) 54, 356, 357
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 50
BmrFI CCNGG 3 cut(s) 54, 356, 357
BmsI GCATC 2 cut(s) 173, 351
BpiI GAAGAC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 356, 357
BsaBI GATNNNNATC 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 11, 355, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 174
Bse8I GATNNNNATC 1 cut(s) 163
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 11, 355, 356
BseGI GGATG 5 cut(s) 6, 33, 96, 164, 366
BseJI GATNNNNATC 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 12, 174
BseMII CTCAG 1 cut(s) 401
BseXI GCAGC 4 cut(s) 16, 165, 277, 337
BshFI GGCC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 1 cut(s) 356
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 12, 174
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 355
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 5 cut(s) 3, 37, 48, 193, 408
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 11, 355, 356
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 60, 321
BstAFI CTTAAG 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 5 cut(s) 6, 33, 96, 164, 366
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 4 cut(s) 45, 109, 129, 383
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 2 cut(s) 107, 344
BstSCI CCNGG 3 cut(s) 52, 354, 355
BstV1I GCAGC 4 cut(s) 16, 165, 277, 337
BstV2I GAAGAC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 5 cut(s) 6, 33, 96, 164, 366
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 50
Cfr9I CCCGGG 1 cut(s) 355
Csp6I GTAC 1 cut(s) 261
CviAII CATG 3 cut(s) 104, 133, 341
CviJI RGCY 5 cut(s) 112, 178, 222, 282, 386
CviKI_1 RGCY 5 cut(s) 112, 178, 222, 282, 386
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 3 cut(s) 107, 136, 344
FaiI YATR 5 cut(s) 25, 105, 134, 342, 398
FaqI GGGAC 1 cut(s) 281
FatI CATG 3 cut(s) 103, 132, 340
FauI CCCGC 1 cut(s) 10
Fnu4HI GCNGC 4 cut(s) 30, 179, 291, 326
FokI GGATG 4 cut(s) 20, 103, 151, 373
Fsp4HI GCNGC 4 cut(s) 30, 179, 291, 326
FspBI CTAG 1 cut(s) 117
GluI GCNGC 4 cut(s) 30, 179, 291, 326
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 356
Hin1II CATG 3 cut(s) 107, 136, 344
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 356
HphI GGTGA 2 cut(s) 155, 344
Hpy166II GTNNAC 1 cut(s) 352
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 60, 321
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 5 cut(s) 132, 164, 325, 344, 364
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 109, 129, 383
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 3 cut(s) 107, 136, 344
LpnPI CCDG 7 cut(s) 39, 66, 199, 241, 314, 350, 369
Lsp1109I GCAGC 4 cut(s) 16, 165, 277, 337
LweI GCATC 2 cut(s) 173, 351
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 263
MboII GAAGA 1 cut(s) 196
MluCI AATT 1 cut(s) 284
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 4 cut(s) 79, 113, 361, 376
MseI TTAA 1 cut(s) 68
MspCI CTTAAG 1 cut(s) 67
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 3 cut(s) 54, 356, 357
MvaI CCWGG 1 cut(s) 54
MwoI GCNNNNNNNGC 4 cut(s) 45, 109, 129, 383
NciI CCSGG 2 cut(s) 356, 357
NlaIII CATG 3 cut(s) 107, 136, 344
NspI RCATGY 2 cut(s) 107, 344
PflFI GACNNNGTC 1 cut(s) 60
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 4 cut(s) 31, 180, 292, 327
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspPI GGNCC 1 cut(s) 50
PsyI GACNNNGTC 1 cut(s) 60
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 4 cut(s) 30, 179, 291, 326
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 54, 356, 357
SetI ASST 6 cut(s) 74, 114, 130, 266, 333, 372
SfaNI GCATC 2 cut(s) 173, 351
SinI GGWCC 1 cut(s) 50
SmaI CCCGGG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 67, 224
SmoI CTYRAG 2 cut(s) 67, 224
Sse9I AATT 1 cut(s) 284
SsiI CCGC 5 cut(s) 3, 37, 48, 193, 408
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 3 cut(s) 52, 354, 355
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 60, 321
TaiI ACGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 333
TasI AATT 1 cut(s) 284
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 351
TseI GCWGC 4 cut(s) 29, 178, 290, 325
TspDTI ATGAA 1 cut(s) 351
TspMI CCCGGG 1 cut(s) 355
TspRI CASTG 1 cut(s) 351
Tth111I GACNNNGTC 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 50
XceI RCATGY 2 cut(s) 107, 344
XmaI CCCGGG 1 cut(s) 355
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.