Rh4AG249100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000124
Physical Location & Seq
Forward (+)
56175655 .. 56176113
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG249100.1

Sequence Viewer

Length: 459 bp
ATGCATATCCACATAAACCTGCAATTATGTGATGAGTTTGTGTCAACAGTTCACAATAATGAATGTGCAAACTTATGTTTTGGTGTTCTCCGGTGCCCCATTTTGAAGGTCTCACAATCTGATGTCGGCGAGGCTATGCGGGCTGTGTCAGCCACCTCAAGCAGCTCGGGTGAACCCCCATCAATGCCAATCAGAAGGTCTAAGGCAGTAGGTGCCGGGGCATCCAGGTCCGTCGCATCTCCATATGCACGTGCCCTTTTCACATACGCAGTTCCACAAAACGAGAGATTGGAGTCCGGCCACTATGCTGAATATGCGGCGGGTCCTTACCTTCTACAGAAGGTCGTCTGCGATGAGGACCTCCTACTCATCAACTACATATTCATCGGGGGTAGGAAATGCACAGTTGAGGAAGGAAGGTTAGCACACAACCAAATAAATGAAACTGATTTCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.56

Weight (kDa)

5.93

Isoelectric Point (pI)

77.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AccB1I GGYRCC 2 cut(s) 93, 212
AciI CCGC 3 cut(s) 139, 317, 320
AcoI YGGCCR 1 cut(s) 298
AcvI CACGTG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 162
AspS9I GGNCC 3 cut(s) 228, 323, 358
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 3 cut(s) 228, 323, 358
BaeGI GKGCMC 2 cut(s) 98, 256
BanI GGYRCC 2 cut(s) 93, 212
BbrPI CACGTG 1 cut(s) 251
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 115
BfmI CTRYAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 27
BisI GCNGC 2 cut(s) 163, 318
BlsI GCNGC 2 cut(s) 164, 319
Bme1390I CCNGG 2 cut(s) 217, 226
Bme18I GGWCC 3 cut(s) 228, 323, 358
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 228, 323, 358
BmiI GGNNCC 3 cut(s) 95, 214, 324
BmrFI CCNGG 2 cut(s) 217, 226
BmsI GCATC 2 cut(s) 230, 245
BpuEI CTTGAG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 90
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 221
BseSI GKGCMC 2 cut(s) 98, 256
BseXI GCAGC 1 cut(s) 174
BshFI GGCC 1 cut(s) 300
BshNI GGYRCC 2 cut(s) 93, 212
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 3 cut(s) 91, 216, 297
BsmAI GTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 300
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 98, 256
BspACI CCGC 3 cut(s) 139, 317, 320
BspANI GGCC 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 95, 214, 324
BspMI ACCTGC 1 cut(s) 27
BspT107I GGYRCC 2 cut(s) 93, 212
BspTNI GGTCTC 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 49, 406
BstAPI GCANNNNNTGC 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 221
BstMAI GTCTC 1 cut(s) 115
BstMWI GCNNNNNNNGC 4 cut(s) 140, 149, 212, 314
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 215, 224
BstSFI CTRYAG 1 cut(s) 335
BstSLI GKGCMC 2 cut(s) 98, 256
BstV1I GCAGC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 221
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 3 cut(s) 228, 323, 358
CviJI RGCY 5 cut(s) 134, 143, 152, 165, 300
CviKI_1 RGCY 5 cut(s) 134, 143, 152, 165, 300
DdeI CTNAG 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 3 cut(s) 228, 323, 358
Eco72I CACGTG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 166
EcoO109I RGGNCCY 2 cut(s) 323, 358
EcoRII CCWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 6
FauI CCCGC 2 cut(s) 132, 313
FauNDI CATATG 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 163, 318
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 163, 318
GluI GCNGC 2 cut(s) 163, 318
HaeIII GGCC 1 cut(s) 300
HapII CCGG 3 cut(s) 91, 216, 297
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 1 cut(s) 293
HpaII CCGG 3 cut(s) 91, 216, 297
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 45, 52, 173
Hpy188I TCNGA 3 cut(s) 121, 194, 455
Hpy8I GTNNAC 3 cut(s) 45, 52, 173
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 6 cut(s) 100, 189, 334, 341, 407, 411
HpyCH4III ACNGT 2 cut(s) 49, 406
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 5 cut(s) 4, 22, 68, 248, 402
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 149, 212, 314
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 250
LpnPI CCDG 6 cut(s) 32, 104, 211, 229, 238, 310
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 2 cut(s) 230, 245
MaeII ACGT 1 cut(s) 250
MhlI GDGCHC 2 cut(s) 98, 256
MluCI AATT 1 cut(s) 23
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 5 cut(s) 124, 166, 349, 371, 403
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 3 cut(s) 91, 216, 297
MspR9I CCNGG 2 cut(s) 217, 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 140, 149, 212, 314
NciI CCSGG 1 cut(s) 217
NdeI CATATG 1 cut(s) 244
NlaIV GGNNCC 3 cut(s) 95, 214, 324
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 2 cut(s) 164, 319
PleI GAGTC 1 cut(s) 301
PmaCI CACGTG 1 cut(s) 251
PmlI CACGTG 1 cut(s) 251
PpsI GAGTC 1 cut(s) 301
Ppu21I YACGTR 1 cut(s) 251
PpuMI RGGWCCY 2 cut(s) 323, 358
Psp5II RGGWCCY 2 cut(s) 323, 358
Psp6I CCWGG 1 cut(s) 224
PspCI CACGTG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 95, 214, 324
PspPI GGNCC 3 cut(s) 228, 323, 358
PspPPI RGGWCCY 2 cut(s) 323, 358
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 2 cut(s) 163, 318
Sau96I GGNCC 3 cut(s) 228, 323, 358
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 217, 226
SduI GDGCHC 2 cut(s) 98, 256
SfaNI GCATC 2 cut(s) 230, 245
SfcI CTRYAG 1 cut(s) 335
SinI GGWCC 3 cut(s) 228, 323, 358
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 23
SsiI CCGC 3 cut(s) 139, 317, 320
StyD4I CCNGG 2 cut(s) 215, 224
TaaI ACNGT 2 cut(s) 49, 406
TaiI ACGT 1 cut(s) 253
TasI AATT 1 cut(s) 23
TauI GCSGC 1 cut(s) 320
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 3 cut(s) 75, 373, 456
TspGWI ACGGA 1 cut(s) 220
VpaK11BI GGWCC 3 cut(s) 228, 323, 358
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.