Rh3BG122700

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000124
Physical Location & Seq
Forward (+)
10058174 .. 10061908
3735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG122700.1

Sequence Viewer

Length: 2208 bp
ATGGAAGGAGAAGGGTTTTCCACACCGACAAAGGATGTTGGAAGTAGTGTTCGGGGGGAAAACGTGAGGATCAAATCAAATTCAAAACTATGGGAATTTAATGCAGCTGTGAAGTGCATTTCGGTTGAAAAAATGGATGCTGTCCGGGCCATAGGCCTAGGGTATACTTTACACCTAGGATGCACGGAGTTGGTACAACCGATCATTGAAGCGACTGTTAAATATGTTGATCCGTTGAATTACAAGATTTTGATTCACGGGATCGTAAGCTACATAAATGGGGATGAATTTGGACGTGTAATGGGCATACACGATGGTGGAGAAGCAATTGTTTTGGGGAATGGCAAAGGAGGAGAGGAGTATGGAACTGCGGTTGGACCAATGTGTGATGGGGAAGGAAGAATCACAGTTGAACAGTTGATTTACATAGTCACTAAACGAACAGAGGTGGATGACACTTTCAAGATAGCATTTGCAATGTTGGCACTGACTTGTGTGATATGCCCGGGAATAGACGAAGCGGTAGATGTGGGAATGTTGCTGCCACTGATGGATACAACCCGAATAGTTCGAAAAAATTGGGCTTCATTTGCCGTTAATCGGTTAATGGAGGGTGTGAAGAGGCACAGGGAGGAAGGAACACCCGTGGTGGGGGGATGTATTATATTTCTTCAACTTCTATACCTTGACAAGGTGGGGGAGGTTCTTACACCGGATAGGGACCGCCTGTGCACACCTATTATGTATTGGGAGAAAAATAAGGTCGATGAAATTGTCAAGAAGATAAGATTGACAGGAGGCCACAAAAGTCCTACTGTCATGCTAGAGAAGAGTAAGAGGACGAAGAGATTACAAGAAGCAGGGCATGAATGCGGAGTTTCGGGATTTGGCCTGAAGCGAGACGTCCACGAGACCATCATGGACTTGCAGTTGGACGTTAAATCAATGAAGGATCGCATGTGGGAAATGAAAGGGGAAGTAAGTACAATGCAACCCAAATTCGTGCAGGTTATGGAGGGGGTACAAATGGTTGTTGATGAAGTTAGAGATACGCTGTCACAAGTAAAGCGGGAATGTCAGAGAATGTGTAAGCAACAATTACGGTTGGAAAGGAACGAGAAGGAAAACGTAGAGAACATGGACAGTGCAGTGAAGGGCATGCGAAGGTATGACGCGACCAAACAGCATCATTCAACATTCATAGTCCCCACCCATGACTACATTGCTGCATTTCAAAAGGGAAATGATAAGGGTAAAAAATACGATATGGAAAATGTGGATGTCGGAGTTGGGTCGGACATTTCATGCACCCCAAAAGGAAAAAAGTTATTGGGAAAGGATAAAGATTTATGTACGGCAGACAAAATCCTGACTGGTTTGAAGCGAAGTCATGCGAATGCAATGTACGATAATTTTAGTGAATATGAGAGGTATGCAAGTATTTTAAAGGACAAAGTAGGTATGTCGCAGTATGAAAGTGGTGTCATTATTCGATATGGAGCGGGCCCTTATAAGGTGAAAGTAAAATTGACCGAGGTTGAAGTCGGAATTATAGAGGATGTGTATTTAGGAGGGAAAACACTGACACCAGAAGAAGGAAGATTATGCTTGGGAATTTGTGGAAATGGGGCTAATTCTATTTGCCGGGACGAGATTAATTGTTTGCTACCGACGACAAATGTCTCTGGAAGTGTGATTAATTATGTGGTGGCGTACCTAAATAAGGAAGGACTCAGCAATTGGTATTGGTCAACACATTTTGAGTCGATATCTCAATGCTCGGAGGGTAAAAGATTCATGCAATGGGTGGCGCATACCAGGAGAGTCTGCGGCCTCCAAAGGTTTGACGGTAGAATTGACAGTTGTGAGAGGATATTTCTGCCTGTGCATGAGGGTTCAATGAAGGATGGCCATTGGATTCTCATTGTGGTTGACATGATCAAAAAGGTTGCTGAAGTATGGGATAGCGGACCGGCCACGGTACTGAAGACGTCCAGAATGGATAACATTTCACAACTGTACGACTCAGACACGCAGAGATCGGCCATATTGCTGGATTGTTTAACAGGCCCTAATAACGAGTTGGATGCAAATTTACGAAGGAGTATCATAAATAATAAAAGTGGGGGTGAGAATGAAGCGACGACACCTGAAGGTTCCCAGAAGAAGCGACAACATCAATTGAGGGAAGAATGGGAAGACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

735

Amino Acids

82.41

Weight (kDa)

6.51

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1512
AatII GACGTC 2 cut(s) 906, 1994
Acc36I ACCTGC 1 cut(s) 997
AccBSI CCGCTC 1 cut(s) 1502
AccI GTMKAC 1 cut(s) 164
AccII CGCG 1 cut(s) 1175
AciI CCGC 8 cut(s) 371, 521, 724, 873, 1069, 1502, 1830, 1968
AclWI GGATC 4 cut(s) 77, 224, 269, 960
AcoI YGGCCR 3 cut(s) 1909, 1974, 2043
AcsI RAATTY 6 cut(s) 79, 95, 287, 998, 1614, 2092
AcuI CTGAAG 4 cut(s) 914, 1974, 2006, 2172
AcyI GRCGYC 2 cut(s) 903, 1991
AfaI GTAC 8 cut(s) 195, 985, 1023, 1354, 1406, 1715, 1983, 2021
AfiI CCNNNNNNNGG 7 cut(s) 600, 650, 651, 691, 1513, 1595, 1723
AflIII ACRYGT 1 cut(s) 295
AjiI CACGTC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 1817
AleI CACNNNNGTG 1 cut(s) 315
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
AluBI AGCT 2 cut(s) 107, 270
AluI AGCT 2 cut(s) 107, 270
Alw21I GWGCWC 1 cut(s) 734
Alw26I GTCTC 3 cut(s) 894, 905, 1687
Alw44I GTGCAC 1 cut(s) 730
AlwI GGATC 4 cut(s) 77, 224, 269, 960
Ama87I CYCGRG 1 cut(s) 505
ApaI GGGCCC 1 cut(s) 1508
ApaLI GTGCAC 1 cut(s) 730
ApeKI GCWGC 3 cut(s) 104, 541, 1226
ApoI RAATTY 6 cut(s) 79, 95, 287, 998, 1614, 2092
AseI ATTAAT 2 cut(s) 1656, 1698
AspA2I CCTAGG 2 cut(s) 157, 175
AspLEI GCGC 1 cut(s) 1813
AspS9I GGNCC 7 cut(s) 147, 377, 721, 1504, 1505, 1970, 2069
AsuC2I CCSGG 4 cut(s) 146, 506, 507, 1646
AsuHPI GGTGA 2 cut(s) 1528, 2141
AsuII TTCGAA 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 3 cut(s) 377, 721, 1970
AvrII CCTAGG 2 cut(s) 157, 175
BaeGI GKGCMC 2 cut(s) 734, 1508
BalI TGGCCA 1 cut(s) 1911
BanII GRGCYC 1 cut(s) 1508
BauI CACGAG 1 cut(s) 908
BbsI GAAGAC 1 cut(s) 1994
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 3 cut(s) 116, 528, 1213
BccI CCATC 5 cut(s) 308, 383, 544, 923, 1901
BceAI ACGGC 2 cut(s) 578, 1371
BcgI CGANNNNNNTGC 2 cut(s) 2069, 2103
BciT130I CCWGG 1 cut(s) 1819
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 1 cut(s) 1938
BcnI CCSGG 4 cut(s) 146, 506, 507, 1646
BcoDI GTCTC 3 cut(s) 894, 905, 1687
BfaI CTAG 3 cut(s) 158, 176, 824
BfuAI ACCTGC 1 cut(s) 997
BfuI GTATCC 1 cut(s) 547
BisI GCNGC 4 cut(s) 105, 542, 1227, 1831
BlnI CCTAGG 2 cut(s) 157, 175
BlsI GCNGC 4 cut(s) 106, 543, 1228, 1832
Bme1390I CCNGG 5 cut(s) 146, 506, 507, 1646, 1819
Bme18I GGWCC 3 cut(s) 377, 721, 1970
BmeT110I CYCGRG 1 cut(s) 505
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 7 cut(s) 147, 377, 721, 1504, 1505, 1970, 2069
BmiI GGNNCC 3 cut(s) 722, 1506, 2158
BmrFI CCNGG 5 cut(s) 146, 506, 507, 1646, 1819
BmsI GCATC 4 cut(s) 127, 170, 1195, 2077
BoxI GACNNNNGTC 1 cut(s) 1679
BpiI GAAGAC 1 cut(s) 1994
Bpu14I TTCGAA 1 cut(s) 571
BpuMI CCSGG 4 cut(s) 146, 506, 507, 1646
BsaHI GRCGYC 2 cut(s) 903, 1991
BsaI GGTCTC 1 cut(s) 905
BsaJI CCNNGG 6 cut(s) 157, 175, 505, 645, 1533, 1977
BsaWI WCCGGW 1 cut(s) 712
Bsc4I CCNNNNNNNGG 7 cut(s) 600, 650, 651, 691, 1513, 1595, 1723
Bse118I RCCGGY 1 cut(s) 1972
Bse1I ACTGG 1 cut(s) 1378
Bse3DI GCAATG 4 cut(s) 483, 1221, 1407, 1808
BseBI CCWGG 1 cut(s) 1819
BseDI CCNNGG 6 cut(s) 157, 175, 505, 645, 1533, 1977
BseLI CCNNNNNNNGG 7 cut(s) 600, 650, 651, 691, 1513, 1595, 1723
BseMI GCAATG 4 cut(s) 483, 1221, 1407, 1808
BseMII CTCAG 2 cut(s) 1747, 2040
BseNI ACTGG 1 cut(s) 1378
BseRI GAGGAG 2 cut(s) 366, 371
BseSI GKGCMC 2 cut(s) 734, 1508
BseXI GCAGC 3 cut(s) 116, 528, 1213
BsgI GTGCAG 2 cut(s) 1025, 1167
Bsh1236I CGCG 1 cut(s) 1175
BsiHKAI GWGCWC 1 cut(s) 734
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 5 cut(s) 145, 506, 713, 1645, 1973
BslFI GGGAC 3 cut(s) 734, 1190, 1661
BslI CCNNNNNNNGG 7 cut(s) 600, 650, 651, 691, 1513, 1595, 1723
BsmAI GTCTC 3 cut(s) 894, 905, 1687
BsmBI CGTCTC 1 cut(s) 894
BsmFI GGGAC 3 cut(s) 734, 1190, 1661
BsmI GAATGC 2 cut(s) 875, 1402
Bso31I GGTCTC 1 cut(s) 905
BsoBI CYCGRG 1 cut(s) 505
Bsp119I TTCGAA 1 cut(s) 571
Bsp120I GGGCCC 1 cut(s) 1504
Bsp1286I GDGCHC 2 cut(s) 734, 1508
Bsp143I GATC 7 cut(s) 69, 201, 229, 261, 952, 1938, 2039
BspACI CCGC 8 cut(s) 371, 521, 724, 873, 1069, 1502, 1830, 1968
BspCNI CTCAG 2 cut(s) 1746, 2039
BspFNI CGCG 1 cut(s) 1175
BspLI GGNNCC 3 cut(s) 722, 1506, 2158
BspMI ACCTGC 1 cut(s) 997
BspPI GGATC 4 cut(s) 77, 224, 269, 960
BspT104I TTCGAA 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 905
BsrBI CCGCTC 1 cut(s) 1502
BsrDI GCAATG 4 cut(s) 483, 1221, 1407, 1808
BsrFI RCCGGY 1 cut(s) 1972
BsrI ACTGG 1 cut(s) 1378
BssAI RCCGGY 1 cut(s) 1972
BssECI CCNNGG 6 cut(s) 157, 175, 505, 645, 1533, 1977
BssMI GATC 7 cut(s) 69, 201, 229, 261, 952, 1938, 2039
BssNAI GTATAC 1 cut(s) 165
BssNI GRCGYC 2 cut(s) 903, 1991
BssSI CACGAG 1 cut(s) 908
BssT1I CCWWGG 2 cut(s) 157, 175
Bst1107I GTATAC 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 908
Bst2UI CCWGG 1 cut(s) 1819
Bst6I CTCTTC 3 cut(s) 614, 824, 839
BstACI GRCGYC 2 cut(s) 903, 1991
BstBI TTCGAA 1 cut(s) 571
BstC8I GCNNGC 2 cut(s) 1160, 1504
BstDEI CTNAG 2 cut(s) 1733, 2026
BstDSI CCRYGG 2 cut(s) 645, 1977
BstENI CCTNNNNNAGG 2 cut(s) 689, 1721
BstFNI CGCG 1 cut(s) 1175
BstHHI GCGC 1 cut(s) 1813
BstKTI GATC 7 cut(s) 72, 204, 232, 264, 955, 1941, 2042
BstMAI GTCTC 3 cut(s) 894, 905, 1687
BstMBI GATC 7 cut(s) 69, 201, 229, 261, 952, 1938, 2039
BstMWI GCNNNNNNNGC 3 cut(s) 146, 482, 590
BstNI CCWGG 1 cut(s) 1819
BstNSI RCATGY 2 cut(s) 961, 1162
BstPAI GACNNNNGTC 1 cut(s) 1679
BstSCI CCNGG 5 cut(s) 144, 504, 505, 1644, 1817
BstSLI GKGCMC 2 cut(s) 734, 1508
BstUI CGCG 1 cut(s) 1175
BstV1I GCAGC 3 cut(s) 116, 528, 1213
BstV2I GAAGAC 1 cut(s) 1994
BstXI CCANNNNNNTGG 1 cut(s) 2053
BstZ17I GTATAC 1 cut(s) 165
BsuI GTATCC 1 cut(s) 547
BtgI CCRYGG 2 cut(s) 645, 1977
BtrI CACGTC 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 5 cut(s) 485, 545, 1150, 1155, 1580
BveI ACCTGC 1 cut(s) 997
Cac8I GCNNGC 2 cut(s) 1160, 1504
CfoI GCGC 1 cut(s) 1813
Cfr10I RCCGGY 1 cut(s) 1972
Cfr13I GGNCC 7 cut(s) 147, 377, 721, 1504, 1505, 1970, 2069
Cfr9I CCCGGG 1 cut(s) 505
CpoI CGGWCCG 1 cut(s) 1970
CseI GACGC 1 cut(s) 1181
Csp6I GTAC 8 cut(s) 194, 984, 1022, 1353, 1405, 1714, 1982, 2020
CspI CGGWCCG 1 cut(s) 1970
CviQI GTAC 8 cut(s) 194, 984, 1022, 1353, 1405, 1714, 1982, 2020
DdeI CTNAG 2 cut(s) 1733, 2026
DpnI GATC 7 cut(s) 71, 203, 231, 263, 954, 1940, 2041
DpnII GATC 7 cut(s) 69, 201, 229, 261, 952, 1938, 2039
DraI TTTAAA 1 cut(s) 1446
EaeI YGGCCR 3 cut(s) 1909, 1974, 2043
Eam1104I CTCTTC 3 cut(s) 614, 824, 839
EarI CTCTTC 3 cut(s) 614, 824, 839
Eco130I CCWWGG 2 cut(s) 157, 175
Eco147I AGGCCT 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 1508
Eco31I GGTCTC 1 cut(s) 905
Eco32I GATATC 1 cut(s) 1770
Eco47I GGWCC 3 cut(s) 377, 721, 1970
Eco57I CTGAAG 4 cut(s) 914, 1974, 2006, 2172
Eco88I CYCGRG 1 cut(s) 505
EcoNI CCTNNNNNAGG 2 cut(s) 689, 1721
EcoO109I RGGNCCY 2 cut(s) 1505, 2069
EcoRII CCWGG 1 cut(s) 1817
EcoRV GATATC 1 cut(s) 1770
EcoT14I CCWWGG 2 cut(s) 157, 175
EcoT38I GRGCYC 1 cut(s) 1508
ErhI CCWWGG 2 cut(s) 157, 175
Esp3I CGTCTC 1 cut(s) 894
FaqI GGGAC 3 cut(s) 734, 1190, 1661
FauI CCCGC 2 cut(s) 1062, 1495
FbaI TGATCA 1 cut(s) 1938
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 4 cut(s) 105, 542, 1227, 1831
FriOI GRGCYC 1 cut(s) 1508
Fsp4HI GCNGC 4 cut(s) 105, 542, 1227, 1831
FspBI CTAG 3 cut(s) 158, 176, 824
GlaI GCGC 1 cut(s) 1812
GluI GCNGC 4 cut(s) 105, 542, 1227, 1831
HapII CCGG 5 cut(s) 145, 506, 713, 1645, 1973
HgaI GACGC 1 cut(s) 1181
HhaI GCGC 1 cut(s) 1813
Hin1I GRCGYC 2 cut(s) 903, 1991
Hin6I GCGC 1 cut(s) 1811
HinP1I GCGC 1 cut(s) 1811
HincII GTYRAC 2 cut(s) 1752, 1933
HindII GTYRAC 2 cut(s) 1752, 1933
HinfI GANTC 8 cut(s) 253, 402, 1731, 1763, 1794, 1824, 1918, 2024
HpaII CCGG 5 cut(s) 145, 506, 713, 1645, 1973
HphI GGTGA 2 cut(s) 1528, 2141
Hpy166II GTNNAC 5 cut(s) 165, 732, 907, 1752, 1933
Hpy188I TCNGA 6 cut(s) 1080, 1286, 1297, 1547, 1783, 2029
Hpy188III TCNNGA 6 cut(s) 463, 778, 882, 1369, 1686, 1995
Hpy8I GTNNAC 5 cut(s) 165, 732, 907, 1752, 1933
Hpy99I CGWCG 2 cut(s) 1675, 2146
HpyCH4IV ACGT 6 cut(s) 63, 295, 903, 936, 1128, 1991
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 482, 590
HpyF3I CTNAG 2 cut(s) 1733, 2026
HpySE526I ACGT 6 cut(s) 63, 295, 903, 936, 1128, 1991
Hsp92I GRCGYC 2 cut(s) 903, 1991
HspAI GCGC 1 cut(s) 1811
Ksp22I TGATCA 1 cut(s) 1938
Kzo9I GATC 7 cut(s) 69, 201, 229, 261, 952, 1938, 2039
LmnI GCTCC 1 cut(s) 1499
Lsp1109I GCAGC 3 cut(s) 116, 528, 1213
LweI GCATC 4 cut(s) 127, 170, 1195, 2077
MaeI CTAG 3 cut(s) 158, 176, 824
MaeII ACGT 6 cut(s) 63, 295, 903, 936, 1128, 1991
MaeIII GTNAC 2 cut(s) 430, 1056
MalI GATC 7 cut(s) 71, 203, 231, 263, 954, 1940, 2041
MbiI CCGCTC 1 cut(s) 1502
MboI GATC 7 cut(s) 69, 201, 229, 261, 952, 1938, 2039
MfeI CAATTG 3 cut(s) 327, 1738, 2180
MhlI GDGCHC 2 cut(s) 734, 1508
MlsI TGGCCA 1 cut(s) 1911
MluNI TGGCCA 1 cut(s) 1911
MlyI GAGTC 4 cut(s) 1725, 1772, 1833, 2018
MmeI TCCRAC 8 cut(s) 19, 355, 912, 1086, 1264, 1275, 1525, 2064
Mox20I TGGCCA 1 cut(s) 1911
MscI TGGCCA 1 cut(s) 1911
MseI TTAA 9 cut(s) 99, 219, 597, 605, 939, 1445, 1656, 1698, 2063
MslI CAYNNNNRTG 2 cut(s) 315, 1395
Msp20I TGGCCA 1 cut(s) 1911
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 5 cut(s) 145, 506, 713, 1645, 1973
MspR9I CCNGG 5 cut(s) 146, 506, 507, 1646, 1819
MunI CAATTG 3 cut(s) 327, 1738, 2180
Mva1269I GAATGC 2 cut(s) 875, 1402
MvaI CCWGG 1 cut(s) 1819
MvnI CGCG 1 cut(s) 1175
MwoI GCNNNNNNNGC 3 cut(s) 146, 482, 590
NciI CCSGG 4 cut(s) 146, 506, 507, 1646
NdeII GATC 7 cut(s) 69, 201, 229, 261, 952, 1938, 2039
NlaIV GGNNCC 3 cut(s) 722, 1506, 2158
NmuCI GTSAC 2 cut(s) 430, 1056
NspI RCATGY 2 cut(s) 961, 1162
NspV TTCGAA 1 cut(s) 571
OliI CACNNNNGTG 1 cut(s) 315
PaeI GCATGC 1 cut(s) 1162
PceI AGGCCT 1 cut(s) 156
PctI GAATGC 2 cut(s) 875, 1402
PfeI GAWTC 4 cut(s) 253, 402, 1794, 1918
PkrI GCNGC 4 cut(s) 106, 543, 1228, 1832
PleI GAGTC 4 cut(s) 1725, 1771, 1832, 2018
PpsI GAGTC 4 cut(s) 1725, 1771, 1832, 2018
PshAI GACNNNNGTC 1 cut(s) 1679
PshBI ATTAAT 2 cut(s) 1656, 1698
PsiI TTATAA 1 cut(s) 1512
Psp6I CCWGG 1 cut(s) 1817
PspGI CCWGG 1 cut(s) 1817
PspN4I GGNNCC 3 cut(s) 722, 1506, 2158
PspOMI GGGCCC 1 cut(s) 1504
PspPI GGNCC 7 cut(s) 147, 377, 721, 1504, 1505, 1970, 2069
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 8 cut(s) 195, 985, 1023, 1354, 1406, 1715, 1983, 2021
RsaNI GTAC 8 cut(s) 194, 984, 1022, 1353, 1405, 1714, 1982, 2020
RseI CAYNNNNRTG 2 cut(s) 315, 1395
Rsr2I CGGWCCG 1 cut(s) 1970
RsrII CGGWCCG 1 cut(s) 1970
SaqAI TTAA 9 cut(s) 99, 219, 597, 605, 939, 1445, 1656, 1698, 2063
SatI GCNGC 4 cut(s) 105, 542, 1227, 1831
Sau3AI GATC 7 cut(s) 69, 201, 229, 261, 952, 1938, 2039
Sau96I GGNCC 7 cut(s) 147, 377, 721, 1504, 1505, 1970, 2069
SchI GAGTC 4 cut(s) 1725, 1772, 1833, 2018
ScrFI CCNGG 5 cut(s) 146, 506, 507, 1646, 1819
SduI GDGCHC 2 cut(s) 734, 1508
SfaNI GCATC 4 cut(s) 127, 170, 1195, 2077
SfuI TTCGAA 1 cut(s) 571
SinI GGWCC 3 cut(s) 377, 721, 1970
SmaI CCCGGG 1 cut(s) 507
SmiMI CAYNNNNRTG 2 cut(s) 315, 1395
SphI GCATGC 1 cut(s) 1162
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 8 cut(s) 371, 521, 724, 873, 1069, 1502, 1830, 1968
SspMI CTAG 3 cut(s) 158, 176, 824
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 5 cut(s) 144, 504, 505, 1644, 1817
StyI CCWWGG 2 cut(s) 157, 175
TaiI ACGT 6 cut(s) 66, 298, 906, 939, 1131, 1994
TaqI TCGA 4 cut(s) 571, 765, 1492, 1766
TaqII GACCGA 1 cut(s) 1547
TatI WGTACW 1 cut(s) 983
TauI GCSGC 1 cut(s) 1833
TfiI GAWTC 4 cut(s) 253, 402, 1794, 1918
Tru1I TTAA 9 cut(s) 99, 219, 597, 605, 939, 1445, 1656, 1698, 2063
Tru9I TTAA 9 cut(s) 99, 219, 597, 605, 939, 1445, 1656, 1698, 2063
TscAI CASTG 5 cut(s) 492, 552, 1150, 1155, 1587
TseFI GTSAC 2 cut(s) 430, 1056
TseI GCWGC 3 cut(s) 104, 541, 1226
Tsp45I GTSAC 2 cut(s) 430, 1056
TspGWI ACGGA 2 cut(s) 200, 222
TspMI CCCGGG 1 cut(s) 505
TspRI CASTG 5 cut(s) 492, 552, 1150, 1155, 1587
VneI GTGCAC 1 cut(s) 730
VpaK11BI GGWCC 3 cut(s) 377, 721, 1970
VspI ATTAAT 2 cut(s) 1656, 1698
XagI CCTNNNNNAGG 2 cut(s) 689, 1721
XapI RAATTY 6 cut(s) 79, 95, 287, 998, 1614, 2092
XceI RCATGY 2 cut(s) 961, 1162
XmaI CCCGGG 1 cut(s) 505
XmaJI CCTAGG 2 cut(s) 157, 175
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 3 cut(s) 158, 176, 824
ZraI GACGTC 2 cut(s) 904, 1992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.