Rh1CG049400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000124
Physical Location & Seq
Forward (+)
9120736 .. 9122150
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG049400.1

Sequence Viewer

Length: 792 bp
ATGGATCATCACCTCGACGTCAACCACCCATACTTCTCAGTGATCGTTCGGTTGCCGAATCAGAACAAAATTCCTCCGGCGTTTATGGAGAAGCACATGAGGGACCTTAACCGGATGGGGGTCGAGCTGACTTTGACGGTACTGCGTGGGGTTCCGTACCGCATAGGCCTGATAGCACAAGGGGATCACCGGTGGATGCACGGAAATTGGGAGTCCTTCATCGAGAAGATTTGTAACCATGAAGGGATGATGCTGTTGGTTTTCCGATACCGCGGTGATGGCTGGTTAACAATACGCCGGTTCCGATTTGATGGGACTATGATCCAATTCGCTGCTGTGCCCCCACCACAAGAAGTTCCAGAGTTACAACAGGTCGATGAACATGTCGCGGATGAGCCGGGGATGCAGGAGGTAAATGTTGATGAGGCCGAGCAGGATATGGACATTGGCGGTGTAGAGGGGGCTGGTTTGGGGGCTTCTAGTAATGGGCCTGTGTACGAGGAGGTTGTCGGTGGCTACCAATGCCTCTGTCATTGTGATGTCAGGATTCAGCAAGGTCATGGAGCGTTTCTCACAAAAGATTCTCATTCTCCGTTTCCTAGAAAGGGTAACGCAAGTGTTAAGCTACAAAGGTCAGACGGAGCCGTGTGGGATATCGAGATCGTGCCTAGCAACGACACTCACTTCCTCACTAGGGGATACAGTAAATTCAAGGAGGTCAATGGACTTCGCAGGGGTCAGCTTCTCCGACTGTATATCGTCTCAAGACTGATGTTCATATTCGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.99

Weight (kDa)

5.94

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 198 - 256 8.8e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 21
AccII CGCG 2 cut(s) 273, 389
AciI CCGC 5 cut(s) 160, 271, 273, 389, 450
AclWI GGATC 3 cut(s) 12, 192, 316
AcsI RAATTY 2 cut(s) 69, 707
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 3 cut(s) 141, 158, 497
AfiI CCNNNNNNNGG 3 cut(s) 118, 605, 694
AflIII ACRYGT 1 cut(s) 382
AgeI ACCGGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 712
AluBI AGCT 3 cut(s) 127, 625, 742
AluI AGCT 3 cut(s) 127, 625, 742
Alw26I GTCTC 1 cut(s) 766
AlwI GGATC 3 cut(s) 12, 192, 316
AoxI GGCC 3 cut(s) 166, 426, 488
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 2 cut(s) 69, 707
AsiGI ACCGGT 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 103, 488
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 2 cut(s) 179, 287
AvaII GGWCC 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 342
BaeI ACNNNNGTAYC 2 cut(s) 259, 292
BbvI GCAGC 1 cut(s) 319
BccI CCATC 3 cut(s) 109, 272, 305
BceAI ACGGC 1 cut(s) 629
BciVI GTATCC 1 cut(s) 692
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 766
BfaI CTAG 4 cut(s) 480, 600, 669, 693
BfuI GTATCC 1 cut(s) 692
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 488
BmiI GGNNCC 4 cut(s) 104, 153, 302, 643
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 3 cut(s) 186, 240, 393
BplI GAGNNNNNCTC 2 cut(s) 555, 587
BpuEI CTTGAG 1 cut(s) 748
BpuMI CCSGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 271, 398
BsaWI WCCGGW 2 cut(s) 111, 189
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 605, 694
Bse118I RCCGGY 2 cut(s) 189, 297
BseDI CCNNGG 2 cut(s) 271, 398
BseGI GGATG 5 cut(s) 120, 201, 252, 397, 408
BseLI CCNNNNNNNGG 3 cut(s) 118, 605, 694
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 515
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 1 cut(s) 319
Bsh1236I CGCG 2 cut(s) 273, 389
BshFI GGCC 3 cut(s) 168, 428, 490
BshTI ACCGGT 1 cut(s) 189
BsiSI CCGG 5 cut(s) 77, 112, 190, 298, 398
BslFI GGGAC 2 cut(s) 116, 328
BslI CCNNNNNNNGG 3 cut(s) 118, 605, 694
BsmAI GTCTC 1 cut(s) 766
BsmBI CGTCTC 1 cut(s) 766
BsmFI GGGAC 2 cut(s) 116, 328
BsnI GGCC 3 cut(s) 168, 428, 490
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 5 cut(s) 4, 42, 184, 321, 660
BspACI CCGC 5 cut(s) 160, 271, 273, 389, 450
BspANI GGCC 3 cut(s) 168, 428, 490
BspCNI CTCAG 1 cut(s) 50
BspFNI CGCG 2 cut(s) 273, 389
BspLI GGNNCC 4 cut(s) 104, 153, 302, 643
BspPI GGATC 3 cut(s) 12, 192, 316
BsrFI RCCGGY 2 cut(s) 189, 297
BssAI RCCGGY 2 cut(s) 189, 297
BssECI CCNNGG 2 cut(s) 271, 398
BssMI GATC 5 cut(s) 4, 42, 184, 321, 660
BssNI GRCGYC 1 cut(s) 18
Bst4CI ACNGT 3 cut(s) 139, 704, 753
BstACI GRCGYC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 37
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 5 cut(s) 120, 201, 252, 397, 408
BstFNI CGCG 2 cut(s) 273, 389
BstKTI GATC 5 cut(s) 7, 45, 187, 324, 663
BstMAI GTCTC 1 cut(s) 766
BstMBI GATC 5 cut(s) 4, 42, 184, 321, 660
BstMWI GCNNNNNNNGC 3 cut(s) 279, 403, 522
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 397
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 2 cut(s) 273, 389
BstV1I GCAGC 1 cut(s) 319
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 3 cut(s) 168, 428, 490
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 5 cut(s) 120, 201, 252, 397, 408
BtsIMutI CAGTG 1 cut(s) 45
Cfr10I RCCGGY 2 cut(s) 189, 297
Cfr13I GGNCC 2 cut(s) 103, 488
Cfr42I CCGCGG 1 cut(s) 274
Csp6I GTAC 3 cut(s) 140, 157, 496
CspAI ACCGGT 1 cut(s) 189
CviAII CATG 4 cut(s) 97, 239, 383, 560
CviQI GTAC 3 cut(s) 140, 157, 496
DdeI CTNAG 1 cut(s) 37
DpnI GATC 5 cut(s) 6, 44, 186, 323, 662
DpnII GATC 5 cut(s) 4, 42, 184, 321, 660
Eco147I AGGCCT 1 cut(s) 168
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 103
EcoRV GATATC 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 766
FaeI CATG 4 cut(s) 100, 242, 386, 563
FaqI GGGAC 2 cut(s) 116, 328
FatI CATG 4 cut(s) 96, 238, 382, 559
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 5 cut(s) 127, 208, 259, 404, 415
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 4 cut(s) 480, 600, 669, 693
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 3 cut(s) 168, 428, 490
HapII CCGG 5 cut(s) 77, 112, 190, 298, 398
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 4 cut(s) 100, 242, 386, 563
HincII GTYRAC 2 cut(s) 22, 288
HindII GTYRAC 2 cut(s) 22, 288
HinfI GANTC 4 cut(s) 58, 212, 547, 581
HpaI GTTAAC 1 cut(s) 288
HpaII CCGG 5 cut(s) 77, 112, 190, 298, 398
HphI GGTGA 2 cut(s) 179, 287
Hpy166II GTNNAC 3 cut(s) 22, 288, 496
Hpy188I TCNGA 5 cut(s) 63, 266, 305, 637, 749
Hpy188III TCNNGA 6 cut(s) 223, 359, 544, 658, 765, 784
Hpy8I GTNNAC 3 cut(s) 22, 288, 496
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 226, 236
HpyCH4III ACNGT 3 cut(s) 139, 704, 753
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 199, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 403, 522
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 4 cut(s) 100, 242, 386, 563
KspAI GTTAAC 1 cut(s) 288
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 5 cut(s) 4, 42, 184, 321, 660
LmnI GCTCC 2 cut(s) 563, 641
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 3 cut(s) 186, 240, 393
MaeI CTAG 4 cut(s) 480, 600, 669, 693
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 233, 363, 608
MalI GATC 5 cut(s) 6, 44, 186, 323, 662
MboI GATC 5 cut(s) 4, 42, 184, 321, 660
MboII GAAGA 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 4 cut(s) 69, 205, 326, 707
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 772
MseI TTAA 3 cut(s) 108, 287, 621
MslI CAYNNNNRTG 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 5 cut(s) 77, 112, 190, 298, 398
MspR9I CCNGG 1 cut(s) 399
MvnI CGCG 2 cut(s) 273, 389
MwoI GCNNNNNNNGC 3 cut(s) 279, 403, 522
NciI CCSGG 1 cut(s) 399
NdeII GATC 5 cut(s) 4, 42, 184, 321, 660
NlaIII CATG 4 cut(s) 100, 242, 386, 563
NlaIV GGNNCC 4 cut(s) 104, 153, 302, 643
NmeAIII GCCGAG 1 cut(s) 454
NspI RCATGY 1 cut(s) 386
PceI AGGCCT 1 cut(s) 168
PciI ACATGT 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfeI GAWTC 3 cut(s) 58, 547, 581
PinAI ACCGGT 1 cut(s) 189
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 103
PscI ACATGT 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 4 cut(s) 104, 153, 302, 643
PspPI GGNCC 2 cut(s) 103, 488
PspPPI RGGWCCY 1 cut(s) 103
RsaI GTAC 3 cut(s) 141, 158, 497
RsaNI GTAC 3 cut(s) 140, 157, 496
RseI CAYNNNNRTG 1 cut(s) 537
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 3 cut(s) 108, 287, 621
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 5 cut(s) 4, 42, 184, 321, 660
Sau96I GGNCC 2 cut(s) 103, 488
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 3 cut(s) 186, 240, 393
Sfr303I CCGCGG 1 cut(s) 274
SgrAI CRCCGGYG 1 cut(s) 189
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
Sse9I AATT 4 cut(s) 69, 205, 326, 707
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 5 cut(s) 160, 271, 273, 389, 450
SspMI CTAG 4 cut(s) 480, 600, 669, 693
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 3 cut(s) 139, 704, 753
TaiI ACGT 1 cut(s) 21
TaqI TCGA 6 cut(s) 15, 123, 222, 375, 657, 783
TasI AATT 4 cut(s) 69, 205, 326, 707
TfiI GAWTC 3 cut(s) 58, 547, 581
Tru1I TTAA 3 cut(s) 108, 287, 621
Tru9I TTAA 3 cut(s) 108, 287, 621
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 4 cut(s) 208, 255, 393, 766
TspGWI ACGGA 4 cut(s) 144, 216, 582, 654
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 2 cut(s) 69, 707
XceI RCATGY 1 cut(s) 386
XspI CTAG 4 cut(s) 480, 600, 669, 693
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.