Rmu_sc0004999.1_g000014

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004999.1
OG0000124
Physical Location & Seq
Reverse (-)
57539 .. 58766
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004999.1_g000014.1.cds

Sequence Viewer

Length: 729 bp
atggccatgcaggtgataaattatgttgtagcgtatctaaataaggaaggcggcagcaattggtattggtcgacgcattttgagtctagagctcagagttcggagggtaaaagattcacgcagtgggtggcacatacgaggagagtatgcggcctccacaagttcgacggtatgatcgacaattgtgagaggattttcttacctgtgcatgagggttcaaccaagaatggccattggattcttattgtggttgacatggccaaaaaggctgttgaagtatgggatagcggaccaggaccggtcttaaacccagaaagaatggagaaagttttgcaagtgcctggaagcatgataatggttgaaaagttctcaatcgtggagcccgcaaatgttccaaagcaaggaaactgttatgattgcggtgtcaaaggaactaatggcatttatgaacttcaattgcagtacgattctgaagaacagagagcagccatattagtggcttgtttaattgccccaaataacgagctggatgctagcttaggagacgaaatcatcataaccgaaagcggggttgacaaacaatcgagccaactcggcatatcacacaagaatagaacaggaaagcagctggaagaatggaaagagggagaggaaggggagtactggcgcagacatcaaactggacgaccgacgggctttcacaatgttggggaggggaaaaaaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

242

Amino Acids

27.26

Weight (kDa)

6.09

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 71
AciI CCGC 6 cut(s) 51, 150, 288, 384, 420, 567
AcoI YGGCCR 3 cut(s) 3, 229, 258
AcuI CTGAAG 1 cut(s) 492
AdeI CACNNNGTG 1 cut(s) 123
AfaI GTAC 2 cut(s) 464, 662
AfiI CCNNNNNNNGG 2 cut(s) 401, 567
AgeI ACCGGT 1 cut(s) 298
AgsI TTSAA 4 cut(s) 219, 275, 362, 455
AjnI CCWGG 2 cut(s) 292, 340
AluBI AGCT 4 cut(s) 92, 526, 537, 628
AluI AGCT 4 cut(s) 92, 526, 537, 628
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 537
AoxI GGCC 4 cut(s) 3, 151, 229, 258
ApeKI GCWGC 3 cut(s) 54, 485, 625
AsiGI ACCGGT 1 cut(s) 298
AspLEI GCGC 1 cut(s) 669
AspS9I GGNCC 2 cut(s) 290, 296
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 533
AvaII GGWCC 2 cut(s) 290, 296
BalI TGGCCA 3 cut(s) 5, 231, 260
BanII GRGCYC 2 cut(s) 94, 384
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 3 cut(s) 66, 497, 637
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 2 cut(s) 294, 342
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 2 cut(s) 87, 534
BglI GCCNNNNNGGC 2 cut(s) 266, 594
BisI GCNGC 5 cut(s) 52, 55, 151, 486, 626
BlsI GCNGC 5 cut(s) 53, 56, 152, 487, 627
BmcAI AGTACT 1 cut(s) 662
Bme1390I CCNGG 2 cut(s) 294, 342
Bme18I GGWCC 2 cut(s) 290, 296
BmgT120I GGNCC 2 cut(s) 290, 296
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 294, 342
BmsI GCATC 1 cut(s) 520
BmtI GCTAGC 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 538
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 567
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 668, 685
BseBI CCWGG 2 cut(s) 294, 342
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 2 cut(s) 401, 567
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 2 cut(s) 668, 685
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 3 cut(s) 66, 497, 637
Bsh1285I CGRYCG 1 cut(s) 689
BshFI GGCC 4 cut(s) 5, 153, 231, 260
BshTI ACCGGT 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 689
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 401, 567
BsmAI GTCTC 1 cut(s) 537
BsmBI CGTCTC 1 cut(s) 537
BsnI GGCC 4 cut(s) 5, 153, 231, 260
Bsp1286I GDGCHC 2 cut(s) 94, 384
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 6 cut(s) 51, 150, 288, 384, 420, 567
BspANI GGCC 4 cut(s) 5, 153, 231, 260
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 381
BspOI GCTAGC 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 2 cut(s) 668, 685
BssAI RCCGGY 1 cut(s) 298
BssMI GATC 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 294, 342
Bst4CI ACNGT 2 cut(s) 170, 410
BstC8I GCNNGC 2 cut(s) 384, 535
BstDEI CTNAG 2 cut(s) 93, 538
BstF5I GGATG 1 cut(s) 535
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 1 cut(s) 174
BstMCI CGRYCG 1 cut(s) 689
BstMWI GCNNNNNNNGC 2 cut(s) 266, 594
BstNI CCWGG 2 cut(s) 294, 342
BstSCI CCNGG 2 cut(s) 292, 340
BstV1I GCAGC 3 cut(s) 66, 497, 637
BstXI CCANNNNNNTGG 1 cut(s) 496
BsuRI GGCC 4 cut(s) 5, 153, 231, 260
BtsCI GGATG 1 cut(s) 535
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 384, 535
CfoI GCGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 290, 296
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 463, 661
CspAI ACCGGT 1 cut(s) 298
CviAII CATG 4 cut(s) 7, 209, 256, 349
CviQI GTAC 2 cut(s) 463, 661
DdeI CTNAG 2 cut(s) 93, 538
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DraIII CACNNNGTG 1 cut(s) 123
EaeI YGGCCR 3 cut(s) 3, 229, 258
Ecl136II GAGCTC 1 cut(s) 92
Eco24I GRGCYC 2 cut(s) 94, 384
Eco47I GGWCC 2 cut(s) 290, 296
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 292, 340
EcoT38I GRGCYC 2 cut(s) 94, 384
Esp3I CGTCTC 1 cut(s) 537
FaeI CATG 4 cut(s) 10, 212, 259, 352
FatI CATG 4 cut(s) 6, 208, 255, 348
FauI CCCGC 2 cut(s) 391, 560
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 5 cut(s) 52, 55, 151, 486, 626
FokI GGATG 1 cut(s) 542
FriOI GRGCYC 2 cut(s) 94, 384
Fsp4HI GCNGC 5 cut(s) 52, 55, 151, 486, 626
FspBI CTAG 2 cut(s) 87, 534
GlaI GCGC 1 cut(s) 668
GluI GCNGC 5 cut(s) 52, 55, 151, 486, 626
HaeIII GGCC 4 cut(s) 5, 153, 231, 260
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 669
Hin1II CATG 4 cut(s) 10, 212, 259, 352
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HincII GTYRAC 3 cut(s) 72, 253, 574
HindII GTYRAC 3 cut(s) 72, 253, 574
HinfI GANTC 4 cut(s) 83, 114, 238, 467
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 72, 253, 574
Hpy188I TCNGA 3 cut(s) 96, 103, 472
Hpy188III TCNNGA 1 cut(s) 87
Hpy8I GTNNAC 3 cut(s) 72, 253, 574
Hpy99I CGWCG 3 cut(s) 76, 170, 694
HpyAV CCTTC 2 cut(s) 41, 647
HpyCH4III ACNGT 2 cut(s) 170, 410
HpyCH4V TGCA 4 cut(s) 10, 208, 334, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 594
HpyF3I CTNAG 2 cut(s) 93, 538
Hsp92II CATG 4 cut(s) 10, 212, 259, 352
HspAI GCGC 1 cut(s) 667
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 66, 497, 637
LweI GCATC 1 cut(s) 520
MaeI CTAG 2 cut(s) 87, 534
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 485, 644
MfeI CAATTG 3 cut(s) 58, 181, 455
MhlI GDGCHC 2 cut(s) 94, 384
MlsI TGGCCA 3 cut(s) 5, 231, 260
MluCI AATT 5 cut(s) 19, 58, 181, 455, 507
MluNI TGGCCA 3 cut(s) 5, 231, 260
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 8 cut(s) 97, 132, 164, 183, 205, 637, 643, 706
Mox20I TGGCCA 3 cut(s) 5, 231, 260
MscI TGGCCA 3 cut(s) 5, 231, 260
MseI TTAA 2 cut(s) 305, 506
MslI CAYNNNNRTG 3 cut(s) 11, 353, 494
Msp20I TGGCCA 3 cut(s) 5, 231, 260
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 294, 342
MunI CAATTG 3 cut(s) 58, 181, 455
MvaI CCWGG 2 cut(s) 294, 342
MwoI GCNNNNNNNGC 2 cut(s) 266, 594
NdeII GATC 1 cut(s) 174
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 4 cut(s) 10, 212, 259, 352
NlaIV GGNNCC 1 cut(s) 381
NmeAIII GCCGAG 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 3 cut(s) 114, 238, 467
PinAI ACCGGT 1 cut(s) 298
PkrI GCNGC 5 cut(s) 53, 56, 152, 487, 627
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 292, 340
PspGI CCWGG 2 cut(s) 292, 340
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 2 cut(s) 290, 296
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 2 cut(s) 464, 662
RsaNI GTAC 2 cut(s) 463, 661
RseI CAYNNNNRTG 3 cut(s) 11, 353, 494
SacI GAGCTC 1 cut(s) 94
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 305, 506
SatI GCNGC 5 cut(s) 52, 55, 151, 486, 626
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 290, 296
ScaI AGTACT 1 cut(s) 662
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 294, 342
SduI GDGCHC 2 cut(s) 94, 384
SetI ASST 6 cut(s) 15, 94, 205, 528, 539, 630
SfaNI GCATC 1 cut(s) 520
SinI GGWCC 2 cut(s) 290, 296
SmiMI CAYNNNNRTG 3 cut(s) 11, 353, 494
Sse9I AATT 5 cut(s) 19, 58, 181, 455, 507
SsiI CCGC 6 cut(s) 51, 150, 288, 384, 420, 567
SspMI CTAG 2 cut(s) 87, 534
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 292, 340
TaaI ACNGT 2 cut(s) 170, 410
TaqI TCGA 4 cut(s) 71, 165, 177, 584
TaqII GACCGA 1 cut(s) 703
TasI AATT 5 cut(s) 19, 58, 181, 455, 507
TatI WGTACW 1 cut(s) 660
TauI GCSGC 2 cut(s) 54, 153
TfiI GAWTC 3 cut(s) 114, 238, 467
Tru1I TTAA 2 cut(s) 305, 506
Tru9I TTAA 2 cut(s) 305, 506
TscAI CASTG 1 cut(s) 128
TseI GCWGC 3 cut(s) 54, 485, 625
TspDTI ATGAA 1 cut(s) 462
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 290, 296
XbaI TCTAGA 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 71
XspI CTAG 2 cut(s) 87, 534
ZrmI AGTACT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.