Rroxscaffold_4G00309310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000124
Physical Location & Seq
Forward (+)
31088590 .. 31089577
988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309310.1

Sequence Viewer

Length: 558 bp
ATGAAGTCTTTGAAAATACCTACTGCTTTTCGACAGCTTCATTTGGCGACCGATGATAGGAAGGAAGCAGTTCTGAATTTAGTCGGATTACCTCATAATGCATGGAAAGTGGATGTCGTTGAGGCAGACAATGAAAAGTTTTTGGGAGTAGGATGGGAGTGGTTTGTACGGCTCACTTGCGGGGTACAAGCAAGGGTGGTACTCGTCCTCAAGTACCAAGGATGTATGACATTTAGTGTCATACGGTTCGGATATAACGGCCAAGTCCTATACTTTCTTCCTTGGTTGACTGCAACCAACCCTTGGAACAAGCTGAATCAAATATATGAAACTTTTCAAGGGTTTGTCGTTACCGTACGGGGACTCGGAAACAGCCATGCCTCAATAGGATATGGTTCGCTCTTCAACCGATTAGTAAATGATGGGGCCGCTATGGGGAAGATAACTTTTCAGATGTATCGCAACGAAGGACCATACTTGGATGACGAAGCTATCTTCGTAGCGATCGACTGTTTTTCGGTCATGGATGGCAGCATTTCGTCGACGCCATTGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.82

Weight (kDa)

6.89

Isoelectric Point (pI)

10.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 303
AccI GTMKAC 1 cut(s) 542
AciI CCGC 2 cut(s) 180, 429
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 545
AfaI GTAC 5 cut(s) 168, 186, 201, 215, 357
AfiI CCNNNNNNNGG 3 cut(s) 57, 303, 435
AgsI TTSAA 3 cut(s) 13, 338, 406
AluBI AGCT 3 cut(s) 37, 313, 491
AluI AGCT 3 cut(s) 37, 313, 491
AoxI GGCC 2 cut(s) 259, 426
ApeKI GCWGC 1 cut(s) 531
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 2 cut(s) 69, 333
AspS9I GGNCC 2 cut(s) 426, 470
AvaII GGWCC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 543
BccI CCATC 3 cut(s) 147, 416, 521
BceAI ACGGC 2 cut(s) 185, 274
BcgI CGANNNNNNTGC 1 cut(s) 532
BfaI CTAG 1 cut(s) 556
BisI GCNGC 2 cut(s) 429, 532
BlsI GCNGC 2 cut(s) 430, 533
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 426, 470
BmiI GGNNCC 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 545
BsaJI CCNNGG 3 cut(s) 217, 281, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 303, 435
Bse3DI GCAATG 1 cut(s) 548
BseDI CCNNGG 3 cut(s) 217, 281, 302
BseGI GGATG 5 cut(s) 118, 158, 227, 487, 532
BseLI CCNNNNNNNGG 3 cut(s) 57, 303, 435
BseMI GCAATG 1 cut(s) 548
BseXI GCAGC 1 cut(s) 543
Bsh1285I CGRYCG 2 cut(s) 51, 507
BshFI GGCC 2 cut(s) 261, 428
BsiEI CGRYCG 2 cut(s) 51, 507
BsiWI CGTACG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 3 cut(s) 57, 303, 435
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 261, 428
Bsp143I GATC 1 cut(s) 504
BspACI CCGC 2 cut(s) 180, 429
BspANI GGCC 2 cut(s) 261, 428
BspLI GGNNCC 1 cut(s) 427
BspQI GCTCTTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 548
BssECI CCNNGG 3 cut(s) 217, 281, 302
BssMI GATC 1 cut(s) 504
BssNI GRCGYC 1 cut(s) 545
BssT1I CCWWGG 3 cut(s) 217, 281, 302
Bst4CI ACNGT 3 cut(s) 246, 355, 512
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 545
BstF5I GGATG 5 cut(s) 118, 158, 227, 487, 532
BstKTI GATC 1 cut(s) 507
BstMBI GATC 1 cut(s) 504
BstMCI CGRYCG 2 cut(s) 51, 507
BstV1I GCAGC 1 cut(s) 543
BsuRI GGCC 2 cut(s) 261, 428
BtsCI GGATG 5 cut(s) 118, 158, 227, 487, 532
Cfr13I GGNCC 2 cut(s) 426, 470
CseI GACGC 1 cut(s) 553
Csp6I GTAC 5 cut(s) 167, 185, 200, 214, 356
CviAII CATG 3 cut(s) 102, 377, 523
CviJI RGCY 7 cut(s) 37, 172, 261, 313, 375, 428, 491
CviKI_1 RGCY 7 cut(s) 37, 172, 261, 313, 375, 428, 491
CviQI GTAC 5 cut(s) 167, 185, 200, 214, 356
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 3 cut(s) 217, 281, 302
Eco47I GGWCC 1 cut(s) 470
EcoT14I CCWWGG 3 cut(s) 217, 281, 302
EcoT22I ATGCAT 1 cut(s) 103
ErhI CCWWGG 3 cut(s) 217, 281, 302
FaeI CATG 3 cut(s) 105, 380, 526
FaqI GGGAC 1 cut(s) 375
FatI CATG 3 cut(s) 101, 376, 522
FauI CCCGC 1 cut(s) 173
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 2 cut(s) 429, 532
FokI GGATG 5 cut(s) 125, 165, 234, 494, 539
Fsp4HI GCNGC 2 cut(s) 429, 532
FspBI CTAG 1 cut(s) 556
GluI GCNGC 2 cut(s) 429, 532
HaeIII GGCC 2 cut(s) 261, 428
HgaI GACGC 1 cut(s) 553
Hin1I GRCGYC 1 cut(s) 545
Hin1II CATG 3 cut(s) 105, 380, 526
HincII GTYRAC 2 cut(s) 288, 543
HindII GTYRAC 2 cut(s) 288, 543
HinfI GANTC 2 cut(s) 316, 363
Hpy166II GTNNAC 2 cut(s) 288, 543
Hpy188I TCNGA 5 cut(s) 75, 86, 251, 368, 453
Hpy8I GTNNAC 2 cut(s) 288, 543
Hpy99I CGWCG 2 cut(s) 544, 547
HpyAV CCTTC 2 cut(s) 55, 461
HpyCH4III ACNGT 3 cut(s) 246, 355, 512
HpyCH4V TGCA 3 cut(s) 101, 293, 553
Hsp92I GRCGYC 1 cut(s) 545
Hsp92II CATG 3 cut(s) 105, 380, 526
Kzo9I GATC 1 cut(s) 504
LguI GCTCTTC 1 cut(s) 407
Lsp1109I GCAGC 1 cut(s) 543
MaeI CTAG 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 349
MalI GATC 1 cut(s) 506
MboI GATC 1 cut(s) 504
MboII GAAGA 4 cut(s) 269, 394, 451, 487
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 4 cut(s) 102, 115, 218, 391
Mph1103I ATGCAT 1 cut(s) 103
MroXI GAANNNNTTC 2 cut(s) 69, 333
NdeII GATC 1 cut(s) 504
NlaIII CATG 3 cut(s) 105, 380, 526
NlaIV GGNNCC 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 504
PdmI GAANNNNTTC 2 cut(s) 69, 333
PfeI GAWTC 1 cut(s) 316
Pfl23II CGTACG 1 cut(s) 355
PflMI CCANNNNNTGG 1 cut(s) 303
PkrI GCNGC 2 cut(s) 430, 533
Ple19I CGATCG 1 cut(s) 507
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
PspLI CGTACG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 2 cut(s) 426, 470
PvuI CGATCG 1 cut(s) 507
RsaI GTAC 5 cut(s) 168, 186, 201, 215, 357
RsaNI GTAC 5 cut(s) 167, 185, 200, 214, 356
SalI GTCGAC 1 cut(s) 541
SapI GCTCTTC 1 cut(s) 407
SatI GCNGC 2 cut(s) 429, 532
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 2 cut(s) 426, 470
SchI GAGTC 1 cut(s) 357
SetI ASST 5 cut(s) 22, 39, 94, 315, 493
SgrDI CGTCGACG 1 cut(s) 541
SinI GGWCC 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 76
SsiI CCGC 2 cut(s) 180, 429
SspMI CTAG 1 cut(s) 556
StyI CCWWGG 3 cut(s) 217, 281, 302
TaaI ACNGT 3 cut(s) 246, 355, 512
TaqI TCGA 3 cut(s) 31, 507, 542
TaqII GACCGA 2 cut(s) 65, 508
TasI AATT 1 cut(s) 76
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 316
TseI GCWGC 1 cut(s) 531
TspDTI ATGAA 4 cut(s) 17, 29, 147, 342
Van91I CCANNNNNTGG 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 542
XmnI GAANNNNTTC 2 cut(s) 69, 333
XspI CTAG 1 cut(s) 556
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.