Rorug05G0106500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000124
Physical Location & Seq
Forward (+)
9345359 .. 9351410
6052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0106500.1

Sequence Viewer

Length: 852 bp
ATGATGGACTCTGCACTTTGTCTCCATAGTGGTGCTCTACACATTCCTTCCACCACTAGCCAAGCAGCCGGATTAGCAAGGCCTTATTCCAGTTTCAGACCTTCTTCTCTTTCACTTTTTTCAAAGGCTTCCACATACCGCACCCTATCGCGACACACCTTCAGTAGTCCTGTGACATGTGCACTTAACAAGCCCTCTCCACCTTCGCCATACTACGACAAAGACAATGGTAAAAAAATTGTGATAGTAGTGGGAGGCGCTTCTGTAGTTTTGGCTTGTGTCCTTGGAGTCATCAACTACAACTTCAATTTCAGTCCCGCAGCCATTGCAGCCCCTATAGTCGTGTCTAGGCCGAAAGCCGCGTTAGATTCATTGTTGACGGTGAACAAACATTTAGCCACATCCAAGAGTACATGGAGCGTGTTCAGATCGACACCACAGCTGAATATTCCCGAGACACCTACAAACGAGGACTATTACAATCTTAAGATTGCAGTAGCGGATTTAATCAAGTCCGGAAACTGCGATGAGGCAGAGACAAAACTTAGAGGGTTATACGAAAACATCCAAGGGAGTGAAGTTAAATACAATGTGGAGATGGAATTGGTACTAGTTCTCATTTTCCAGGGAAAATACAAAGAGGCTTTGGAACGCGGTTGTCTCAGTGGTGGTCCCATGGTTGAGTCGGATGGTCGAGTTCATTTTTACAAGGCTATTATATACACCATGCTGGGTCGGGATGATGAAGCCAAGACATCCTGGAATAGATTTTTGGAATCCTATTCCAATCCACTATCGCAGCAAGACTACTCTGAGGTTGTGACCCCAAAGTATCGAAGAGACACACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

283

Amino Acids

31.21

Weight (kDa)

8.83

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 151, 362, 654
AccIII TCCGGA 1 cut(s) 515
AciI CCGC 5 cut(s) 139, 318, 360, 500, 654
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 2 cut(s) 412, 609
AflII CTTAAG 1 cut(s) 485
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 2 cut(s) 123, 307
AhlI ACTAGT 1 cut(s) 610
AjnI CCWGG 2 cut(s) 624, 758
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw21I GWGCWC 2 cut(s) 37, 184
Alw26I GTCTC 5 cut(s) 26, 449, 530, 665, 834
Alw44I GTGCAC 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 515
AoxI GGCC 2 cut(s) 80, 350
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 4 cut(s) 65, 320, 329, 799
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 671
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 671
BaeGI GKGCMC 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 37, 184
BbvI GCAGC 4 cut(s) 77, 332, 341, 811
BccI CCATC 2 cut(s) 592, 683
BciT130I CCWGG 2 cut(s) 626, 760
BcoDI GTCTC 5 cut(s) 26, 449, 530, 665, 834
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 3 cut(s) 57, 348, 611
BfmI CTRYAG 2 cut(s) 264, 336
BfoI RGCGCY 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 485
BisI GCNGC 5 cut(s) 66, 321, 330, 360, 800
BlsI GCNGC 5 cut(s) 67, 322, 331, 361, 801
Bme1390I CCNGG 2 cut(s) 626, 760
Bme18I GGWCC 1 cut(s) 671
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 671
BmiI GGNNCC 1 cut(s) 673
BmrFI CCNGG 2 cut(s) 626, 760
BsaJI CCNNGG 4 cut(s) 283, 568, 625, 675
BsaWI WCCGGW 1 cut(s) 515
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 2 cut(s) 626, 760
BseDI CCNNGG 4 cut(s) 283, 568, 625, 675
BseGI GGATG 5 cut(s) 401, 564, 694, 745, 755
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 676, 804
BseNI ACTGG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 4 cut(s) 77, 332, 341, 811
BseYI CCCAGC 1 cut(s) 730
Bsh1236I CGCG 3 cut(s) 151, 362, 654
BshFI GGCC 2 cut(s) 82, 352
BsiHKAI GWGCWC 2 cut(s) 37, 184
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 2 cut(s) 69, 516
BslFI GGGAC 2 cut(s) 300, 657
BsmAI GTCTC 5 cut(s) 26, 449, 530, 665, 834
BsmFI GGGAC 2 cut(s) 300, 657
BsnI GGCC 2 cut(s) 82, 352
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 37, 184
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 1 cut(s) 428
Bsp19I CCATGG 1 cut(s) 675
Bsp68I TCGCGA 1 cut(s) 151
BspACI CCGC 5 cut(s) 139, 318, 360, 500, 654
BspANI GGCC 2 cut(s) 82, 352
BspCNI CTCAG 2 cut(s) 675, 805
BspEI TCCGGA 1 cut(s) 515
BspFNI CGCG 3 cut(s) 151, 362, 654
BspLI GGNNCC 1 cut(s) 673
BspTI CTTAAG 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 4 cut(s) 283, 568, 625, 675
BssMI GATC 1 cut(s) 428
BssT1I CCWWGG 3 cut(s) 283, 568, 675
Bst2UI CCWGG 2 cut(s) 626, 760
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 832
BstAFI CTTAAG 1 cut(s) 485
BstAPI GCANNNNNTGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 545, 662, 813
BstDSI CCRYGG 1 cut(s) 675
BstF5I GGATG 5 cut(s) 401, 564, 694, 745, 755
BstFNI CGCG 3 cut(s) 151, 362, 654
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 1 cut(s) 431
BstMAI GTCTC 5 cut(s) 26, 449, 530, 665, 834
BstMBI GATC 1 cut(s) 428
BstMWI GCNNNNNNNGC 3 cut(s) 74, 326, 329
BstNI CCWGG 2 cut(s) 626, 760
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 624, 758
BstSFI CTRYAG 2 cut(s) 264, 336
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 3 cut(s) 151, 362, 654
BstV1I GCAGC 4 cut(s) 77, 332, 341, 811
BsuRI GGCC 2 cut(s) 82, 352
BtgI CCRYGG 1 cut(s) 675
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 5 cut(s) 401, 564, 694, 745, 755
BtsIMutI CAGTG 1 cut(s) 670
BtuMI TCGCGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 671
Csp6I GTAC 2 cut(s) 411, 608
CviAII CATG 4 cut(s) 177, 414, 676, 727
CviQI GTAC 2 cut(s) 411, 608
DdeI CTNAG 3 cut(s) 545, 662, 813
DpnI GATC 1 cut(s) 430
DpnII GATC 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
Eco130I CCWWGG 3 cut(s) 283, 568, 675
Eco147I AGGCCT 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 624, 758
EcoT14I CCWWGG 3 cut(s) 283, 568, 675
ErhI CCWWGG 3 cut(s) 283, 568, 675
FaeI CATG 4 cut(s) 180, 417, 679, 730
FaqI GGGAC 2 cut(s) 300, 657
FatI CATG 4 cut(s) 176, 413, 675, 726
FauI CCCGC 1 cut(s) 325
Fnu4HI GCNGC 5 cut(s) 66, 321, 330, 360, 800
FokI GGATG 5 cut(s) 388, 551, 701, 742, 752
Fsp4HI GCNGC 5 cut(s) 66, 321, 330, 360, 800
FspBI CTAG 3 cut(s) 57, 348, 611
GlaI GCGC 1 cut(s) 259
GluI GCNGC 5 cut(s) 66, 321, 330, 360, 800
GsaI CCCAGC 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 2 cut(s) 82, 352
HapII CCGG 2 cut(s) 69, 516
HhaI GCGC 1 cut(s) 260
Hin1II CATG 4 cut(s) 180, 417, 679, 730
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 5 cut(s) 8, 288, 368, 683, 776
HpaII CCGG 2 cut(s) 69, 516
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 3 cut(s) 182, 378, 385
Hpy188I TCNGA 4 cut(s) 98, 428, 688, 814
Hpy188III TCNNGA 4 cut(s) 150, 452, 516, 737
Hpy8I GTNNAC 3 cut(s) 182, 378, 385
HpyAV CCTTC 4 cut(s) 57, 111, 169, 213
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 4 cut(s) 14, 182, 329, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 326, 329
HpyF3I CTNAG 3 cut(s) 545, 662, 813
Hsp92II CATG 4 cut(s) 180, 417, 679, 730
HspAI GCGC 1 cut(s) 258
Kpn2I TCCGGA 1 cut(s) 515
Kzo9I GATC 1 cut(s) 428
LmnI GCTCC 1 cut(s) 417
LpnPI CCDG 9 cut(s) 82, 103, 183, 529, 611, 638, 716, 745, 772
Lsp1109I GCAGC 4 cut(s) 77, 332, 341, 811
MaeI CTAG 3 cut(s) 57, 348, 611
MaeIII GTNAC 2 cut(s) 172, 820
MalI GATC 1 cut(s) 430
MboI GATC 1 cut(s) 428
MboII GAAGA 2 cut(s) 96, 849
MhlI GDGCHC 2 cut(s) 37, 184
MluCI AATT 3 cut(s) 237, 307, 602
MlyI GAGTC 3 cut(s) 2, 297, 692
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 7 cut(s) 205, 248, 463, 523, 542, 634, 808
MroI TCCGGA 1 cut(s) 515
MseI TTAA 4 cut(s) 186, 486, 506, 582
MslI CAYNNNNRTG 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 442
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 2 cut(s) 69, 516
MspR9I CCNGG 2 cut(s) 626, 760
MvaI CCWGG 2 cut(s) 626, 760
MvnI CGCG 3 cut(s) 151, 362, 654
MwoI GCNNNNNNNGC 3 cut(s) 74, 326, 329
NcoI CCATGG 1 cut(s) 675
NdeII GATC 1 cut(s) 428
NlaIII CATG 4 cut(s) 180, 417, 679, 730
NlaIV GGNNCC 1 cut(s) 673
NmuCI GTSAC 2 cut(s) 172, 820
NruI TCGCGA 1 cut(s) 151
NspI RCATGY 1 cut(s) 180
PceI AGGCCT 1 cut(s) 82
PciI ACATGT 1 cut(s) 176
PfeI GAWTC 2 cut(s) 368, 776
PfoI TCCNGGA 1 cut(s) 758
PkrI GCNGC 5 cut(s) 67, 322, 331, 361, 801
PleI GAGTC 3 cut(s) 2, 296, 691
PpsI GAGTC 3 cut(s) 2, 296, 691
PscI ACATGT 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 624, 758
PspFI CCCAGC 1 cut(s) 730
PspGI CCWGG 2 cut(s) 624, 758
PspN4I GGNNCC 1 cut(s) 673
PspPI GGNCC 1 cut(s) 671
PvuII CAGCTG 1 cut(s) 442
RruI TCGCGA 1 cut(s) 151
RsaI GTAC 2 cut(s) 412, 609
RsaNI GTAC 2 cut(s) 411, 608
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 4 cut(s) 186, 486, 506, 582
SatI GCNGC 5 cut(s) 66, 321, 330, 360, 800
Sau3AI GATC 1 cut(s) 428
Sau96I GGNCC 1 cut(s) 671
SchI GAGTC 3 cut(s) 2, 297, 692
ScrFI CCNGG 2 cut(s) 626, 760
SduI GDGCHC 2 cut(s) 37, 184
SetI ASST 6 cut(s) 103, 161, 205, 444, 463, 819
SfcI CTRYAG 2 cut(s) 264, 336
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 3 cut(s) 237, 307, 602
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 5 cut(s) 139, 318, 360, 500, 654
SspI AATATT 1 cut(s) 448
SspMI CTAG 3 cut(s) 57, 348, 611
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 2 cut(s) 624, 758
StyI CCWWGG 3 cut(s) 283, 568, 675
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 3 cut(s) 431, 694, 835
TasI AATT 3 cut(s) 237, 307, 602
TatI WGTACW 1 cut(s) 410
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 2 cut(s) 368, 776
Tru1I TTAA 4 cut(s) 186, 486, 506, 582
Tru9I TTAA 4 cut(s) 186, 486, 506, 582
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 2 cut(s) 172, 820
TseI GCWGC 4 cut(s) 65, 320, 329, 799
Tsp45I GTSAC 2 cut(s) 172, 820
TspDTI ATGAA 3 cut(s) 360, 689, 759
TspRI CASTG 1 cut(s) 670
Vha464I CTTAAG 1 cut(s) 485
VneI GTGCAC 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 671
XceI RCATGY 1 cut(s) 180
XspI CTAG 3 cut(s) 57, 348, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.