Rh7DG353100

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000124
Physical Location & Seq
Reverse (-)
47023837 .. 47026560
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG353100.1

Sequence Viewer

Length: 1305 bp
ATGTATTGGAACACTAATAAGGTACAGGAAATTGTGAACAAGATAAGGTTGACCGGAGGCCACAAAAGTCCTATTGTCATGTTGGAGAAGAGCAAGAGGACGAAGAGATTACAAGACGCAGGTCATGAATGCGGGGTTTCGGGATTCGGACTGAAGCGGGACGTCCACAAGACCATGATGGACTTGCAGTTGGATGTGAGTTCGATGAAGGACCGCATGTGGGATATGAAATGGGAAGTAAGTCGAATGCAACCCAAATTCTTGGACTTTACAAAGGGGGTAGAATTGACACTTCAGGAACTCAAACAAACATTTTCACAAGTAAAAAGTGAATTTTACACAATCTCTAAGCAACAATTAGGGTTGGAAAGGACTAAGGAAGAGAAATTTCGGGTAATTGACAATGTGGTCAAGGGCATGGGAGGGATTGACGAGACAAAAAGGCATCCTTCCACCGTGGGAATGTGCAACGATGACTGCAGTAGAGAAATTCATTTGCCAAATAACAAGCGAAGTCATGGGAGTGCAATGTACAGTGCATTACATGAATATGAGGAGTATGCAAGTATTTTAAAGGGTAAAGTGGGAATGTCACAGTGCAGCAGTGGGGTAAATATACGATATGGAGCTGGGCCGTATAGGCTGAAACTCAAACTGTCTGAGTCTGAAGTAAGAATAATAGACTTAGTGTTTTTGGGCGGGAAACAACTAACGAAACAAGAAGGAAGATTATGCTTAGGAATATGTGGAAAATGGTCACAATCAATTTGCCGTGACGAGATAAATTGCCTGATGCCAAACACAAATGTATCTGGAAGTTCAAGATCTAAAAGTGCGGAGGGTCAAAGATTCAAGCAGTGGGTGGCATATAACAGGAGAGTTTGCGGCCCCCAAAAGTTTGATGGTAGGATCAACACTTGTGAAAGGATATTCTTACCTGTGCATGACAGTTCAATCAAGGATGGGCATTGGATTCTCATTGTGGTTGACATGGTCAAAAAGATTGCTGAAGTATGGGATAGCGGACCAGGACCAATACTACAGCCATTGACAATGGAAAACATTTTGCTTGTGTATGACTCGGAATACCAGAGAGCAGCCATATTATTGGATTGTTTAACAGCCCCAAATAACGAGTCGGATGCAAACGTAGGAGCGGCTATCGTAAATAGTGACAATGGGGTTGAAAAAAAAAAGCAATGCAGCATGATGGTTTGCATCAGAATGGAGAAGGAAAGCATATGGAAGAATGAGAAAAAGGAGGGAAAGAGGAGTATAGCCACATACAAGGTCGTGCAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 Peptidase_C48

Protein Analysis

434

Amino Acids

49.29

Weight (kDa)

9.09

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 407
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 1157
AciI CCGC 8 cut(s) 132, 157, 214, 699, 836, 885, 1023, 1157
AclWI GGATC 1 cut(s) 917
AcsI RAATTY 4 cut(s) 257, 332, 386, 489
AcuI CTGAAG 4 cut(s) 173, 278, 687, 1029
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 24, 533
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 4 cut(s) 822, 853, 954, 1187
AjnI CCWGG 1 cut(s) 1027
AluBI AGCT 1 cut(s) 629
AluI AGCT 1 cut(s) 629
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 1 cut(s) 917
AoxI GGCC 3 cut(s) 58, 632, 886
ApeKI GCWGC 3 cut(s) 600, 1097, 1203
ApoI RAATTY 4 cut(s) 257, 332, 386, 489
ArsI GACNNNNNNTTYG 2 cut(s) 1121, 1153
AspS9I GGNCC 5 cut(s) 211, 632, 887, 1025, 1031
AvaII GGWCC 3 cut(s) 211, 1025, 1031
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BbvI GCAGC 3 cut(s) 612, 1109, 1215
BccI CCATC 4 cut(s) 172, 896, 956, 1204
BceAI ACGGC 2 cut(s) 619, 756
BcgI CGANNNNNNTGC 2 cut(s) 1124, 1158
BciT130I CCWGG 1 cut(s) 1029
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 1303
BfmI CTRYAG 2 cut(s) 478, 1040
BfuAI ACCTGC 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 640
BglII AGATCT 1 cut(s) 824
BisI GCNGC 5 cut(s) 601, 886, 1098, 1158, 1204
BlsI GCNGC 5 cut(s) 602, 887, 1099, 1159, 1205
Bme1390I CCNGG 1 cut(s) 1029
Bme18I GGWCC 3 cut(s) 211, 1025, 1031
BmgT120I GGNCC 5 cut(s) 211, 632, 887, 1025, 1031
BmiI GGNNCC 1 cut(s) 889
BmrFI CCNGG 1 cut(s) 1029
BmsI GCATC 4 cut(s) 454, 783, 1132, 1227
BoxI GACNNNNGTC 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 736
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 534, 1205
BseBI CCWGG 1 cut(s) 1029
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 4 cut(s) 199, 445, 967, 1147
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMI GCAATG 2 cut(s) 534, 1205
BseMII CTCAG 1 cut(s) 651
BseRI GAGGAG 2 cut(s) 569, 1285
BseXI GCAGC 3 cut(s) 612, 1109, 1215
BseYI CCCAGC 1 cut(s) 629
BsgI GTGCAG 1 cut(s) 619
BshFI GGCC 3 cut(s) 60, 634, 888
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 2 cut(s) 134, 252
BsnI GGCC 3 cut(s) 60, 634, 888
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 2 cut(s) 824, 909
BspACI CCGC 8 cut(s) 132, 157, 214, 699, 836, 885, 1023, 1157
BspANI GGCC 3 cut(s) 60, 634, 888
BspCNI CTCAG 1 cut(s) 652
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 889
BspMAI CTGCAG 1 cut(s) 482
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 917
BspQI GCTCTTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 1157
BsrDI GCAATG 2 cut(s) 534, 1205
BsrGI TGTACA 1 cut(s) 531
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 2 cut(s) 824, 909
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 5 cut(s) 457, 536, 597, 657, 950
Bst6I CTCTTC 3 cut(s) 83, 98, 375
BstACI GRCGYC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 531
BstDEI CTNAG 5 cut(s) 348, 375, 660, 685, 736
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 4 cut(s) 199, 445, 967, 1147
BstKTI GATC 2 cut(s) 827, 912
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 2 cut(s) 824, 909
BstMWI GCNNNNNNNGC 1 cut(s) 640
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 1027
BstSFI CTRYAG 2 cut(s) 478, 1040
BstV1I GCAGC 3 cut(s) 612, 1109, 1215
BstX2I RGATCY 1 cut(s) 824
BstXI CCANNNNNNTGG 2 cut(s) 262, 1108
BstYI RGATCY 1 cut(s) 824
BsuRI GGCC 3 cut(s) 60, 634, 888
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 4 cut(s) 199, 445, 967, 1147
BtsI GCAGTG 2 cut(s) 610, 863
BtsIMutI CAGTG 4 cut(s) 541, 602, 610, 863
BveI ACCTGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 5 cut(s) 211, 632, 887, 1025, 1031
CseI GACGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 23, 532
CviQI GTAC 2 cut(s) 23, 532
DdeI CTNAG 5 cut(s) 348, 375, 660, 685, 736
DpnI GATC 2 cut(s) 826, 911
DpnII GATC 2 cut(s) 824, 909
DraI TTTAAA 1 cut(s) 573
DrdI GACNNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 3 cut(s) 83, 98, 375
EarI CTCTTC 3 cut(s) 83, 98, 375
Eco47I GGWCC 3 cut(s) 211, 1025, 1031
Eco57I CTGAAG 4 cut(s) 173, 278, 687, 1029
EcoRII CCWGG 1 cut(s) 1027
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FaqI GGGAC 1 cut(s) 173
FauI CCCGC 3 cut(s) 125, 150, 692
FauNDI CATATG 1 cut(s) 1241
Fnu4HI GCNGC 5 cut(s) 601, 886, 1098, 1158, 1204
FokI GGATG 4 cut(s) 206, 432, 974, 1154
Fsp4HI GCNGC 5 cut(s) 601, 886, 1098, 1158, 1204
FspBI CTAG 1 cut(s) 1303
GluI GCNGC 5 cut(s) 601, 886, 1098, 1158, 1204
GsaI CCCAGC 1 cut(s) 633
HaeIII GGCC 3 cut(s) 60, 634, 888
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 162
HincII GTYRAC 2 cut(s) 51, 988
HindII GTYRAC 2 cut(s) 51, 988
HinfI GANTC 6 cut(s) 144, 662, 849, 973, 1079, 1136
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 4 cut(s) 37, 51, 166, 988
Hpy188I TCNGA 6 cut(s) 149, 661, 667, 1084, 1141, 1223
Hpy188III TCNNGA 5 cut(s) 125, 141, 296, 813, 822
Hpy8I GTNNAC 4 cut(s) 37, 51, 166, 988
HpyAV CCTTC 4 cut(s) 202, 459, 716, 1225
HpyCH4III ACNGT 5 cut(s) 457, 536, 597, 657, 950
HpyCH4IV ACGT 2 cut(s) 162, 1149
HpyF10VI GCNNNNNNNGC 1 cut(s) 640
HpyF3I CTNAG 5 cut(s) 348, 375, 660, 685, 736
HpySE526I ACGT 2 cut(s) 162, 1149
Hsp92I GRCGYC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 824, 909
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 626, 1154
Lsp1109I GCAGC 3 cut(s) 612, 1109, 1215
LweI GCATC 4 cut(s) 454, 783, 1132, 1227
MaeI CTAG 1 cut(s) 1303
MaeII ACGT 2 cut(s) 162, 1149
MaeIII GTNAC 4 cut(s) 591, 756, 773, 1172
MalI GATC 2 cut(s) 826, 911
MbiI CCGCTC 1 cut(s) 1157
MboI GATC 2 cut(s) 824, 909
MboII GAAGA 5 cut(s) 100, 115, 392, 738, 1258
MflI RGATCY 1 cut(s) 824
MlyI GAGTC 3 cut(s) 671, 1073, 1145
MmeI TCCRAC 4 cut(s) 63, 171, 345, 1119
MnlI CCTC 7 cut(s) 50, 90, 416, 547, 832, 1255, 1263
MseI TTAA 2 cut(s) 572, 1118
MslI CAYNNNNRTG 3 cut(s) 522, 549, 1223
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 1029
Mva1269I GAATGC 2 cut(s) 134, 252
MvaI CCWGG 1 cut(s) 1029
MwoI GCNNNNNNNGC 1 cut(s) 640
NdeI CATATG 1 cut(s) 1241
NdeII GATC 2 cut(s) 824, 909
NlaIV GGNNCC 1 cut(s) 889
NmuCI GTSAC 4 cut(s) 591, 756, 773, 1172
NspI RCATGY 1 cut(s) 220
PagI TCATGA 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 83
PctI GAATGC 2 cut(s) 134, 252
PfeI GAWTC 3 cut(s) 144, 849, 973
PflFI GACNNNGTC 1 cut(s) 992
PkrI GCNGC 5 cut(s) 602, 887, 1099, 1159, 1205
PleI GAGTC 3 cut(s) 670, 1073, 1144
PpsI GAGTC 3 cut(s) 670, 1073, 1144
PshAI GACNNNNGTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 1027
PspFI CCCAGC 1 cut(s) 629
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 1 cut(s) 889
PspPI GGNCC 5 cut(s) 211, 632, 887, 1025, 1031
PstI CTGCAG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 824
PsyI GACNNNGTC 1 cut(s) 992
RsaI GTAC 2 cut(s) 24, 533
RsaNI GTAC 2 cut(s) 23, 532
RseI CAYNNNNRTG 3 cut(s) 522, 549, 1223
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 572, 1118
SatI GCNGC 5 cut(s) 601, 886, 1098, 1158, 1204
Sau3AI GATC 2 cut(s) 824, 909
Sau96I GGNCC 5 cut(s) 211, 632, 887, 1025, 1031
SchI GAGTC 3 cut(s) 671, 1073, 1145
ScrFI CCNGG 1 cut(s) 1029
SetI ASST 8 cut(s) 24, 50, 124, 165, 631, 940, 1152, 1293
SfaNI GCATC 4 cut(s) 454, 783, 1132, 1227
SfcI CTRYAG 2 cut(s) 478, 1040
SinI GGWCC 3 cut(s) 211, 1025, 1031
SmiMI CAYNNNNRTG 3 cut(s) 522, 549, 1223
SsiI CCGC 8 cut(s) 132, 157, 214, 699, 836, 885, 1023, 1157
SspMI CTAG 1 cut(s) 1303
StyD4I CCNGG 1 cut(s) 1027
TaaI ACNGT 5 cut(s) 457, 536, 597, 657, 950
TaiI ACGT 2 cut(s) 165, 1152
TaqI TCGA 2 cut(s) 203, 244
TatI WGTACW 1 cut(s) 531
TauI GCSGC 2 cut(s) 888, 1160
TfiI GAWTC 3 cut(s) 144, 849, 973
Tru1I TTAA 2 cut(s) 572, 1118
Tru9I TTAA 2 cut(s) 572, 1118
TscAI CASTG 4 cut(s) 541, 602, 610, 863
TseFI GTSAC 4 cut(s) 591, 756, 773, 1172
TseI GCWGC 3 cut(s) 600, 1097, 1203
Tsp45I GTSAC 4 cut(s) 591, 756, 773, 1172
TspDTI ATGAA 5 cut(s) 141, 221, 242, 482, 561
TspRI CASTG 4 cut(s) 541, 602, 610, 863
Tth111I GACNNNGTC 1 cut(s) 992
VpaK11BI GGWCC 3 cut(s) 211, 1025, 1031
XapI RAATTY 4 cut(s) 257, 332, 386, 489
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 899
XspI CTAG 1 cut(s) 1303
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.