Rh7DG325300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000124
Physical Location & Seq
Forward (+)
39179006 .. 39179740
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG325300.1

Sequence Viewer

Length: 453 bp
ATGATGAAGGTCAGCCAATTCGCTGCTGTGCCCCCACCACAAGTTCCAGAGTTGCAACAGGTCAATGAACATGCCGCGAATGAGCTAGGGATGCAGGAGGTAAATGCTGATATGGACATTGGCAGTGTAGAGGGGGCCGATTTGGGGGCTAATAATAATGGGCCTATGTACGAGGAGGTTGTCTGTGGCTACCAACGCATCCGTTATTGTGATGTTAGGATTCAGCAAGGTCATGGAGCGTTTCTCACAAATGATGCTCGTTCTCTGCTTCCTAGAAAGGGTAACGCATGTGTTAAGATGCAAAGGTCATACGGAGCCTTGTGGGATATCGGGGTCGCGCCTAGCAACGACACTCACTTCCTCACCAGGGGCTATAGTAAATTCAAGGAGGCAAATGGACTTCGCAGGGGTCAGCTGCTCCGATTGTATATCGTCTCAAGACGAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.75

Weight (kDa)

8.86

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 77, 338
AciI CCGC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 144, 278, 367
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 365
AluBI AGCT 2 cut(s) 85, 415
AluI AGCT 2 cut(s) 85, 415
Alw26I GTCTC 1 cut(s) 439
AoxI GGCC 2 cut(s) 135, 161
ApeKI GCWGC 2 cut(s) 23, 415
ApoI RAATTY 1 cut(s) 380
ArsI GACNNNNNNTTYG 1 cut(s) 432
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 135, 161
AsuHPI GGTGA 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 10, 402
BciT130I CCWGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 3 cut(s) 86, 273, 342
BfmI CTRYAG 1 cut(s) 373
BisI GCNGC 3 cut(s) 24, 75, 416
BlsI GCNGC 3 cut(s) 25, 76, 417
Bme1390I CCNGG 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 135, 161
BmiI GGNNCC 2 cut(s) 136, 316
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 4 cut(s) 81, 207, 244, 288
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpuEI CTTGAG 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 366
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 278, 367
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 96, 198
BseLI CCNNNNNNNGG 3 cut(s) 144, 278, 367
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 2 cut(s) 10, 402
Bsh1236I CGCG 2 cut(s) 77, 338
BshFI GGCC 2 cut(s) 137, 163
BslI CCNNNNNNNGG 3 cut(s) 144, 278, 367
BsmAI GTCTC 1 cut(s) 439
BsmBI CGTCTC 1 cut(s) 439
BsnI GGCC 2 cut(s) 137, 163
Bsp1286I GDGCHC 1 cut(s) 33
BspACI CCGC 1 cut(s) 75
BspANI GGCC 2 cut(s) 137, 163
BspFNI CGCG 2 cut(s) 77, 338
BspLI GGNNCC 2 cut(s) 136, 316
BssECI CCNNGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 367
BstF5I GGATG 2 cut(s) 96, 198
BstFNI CGCG 2 cut(s) 77, 338
BstHHI GCGC 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 91, 195
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 2 cut(s) 74, 291
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 373
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 2 cut(s) 77, 338
BstV1I GCAGC 2 cut(s) 10, 402
BsuRI GGCC 2 cut(s) 137, 163
BtsCI GGATG 2 cut(s) 96, 198
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 135, 161
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 71, 233, 288
CviJI RGCY 9 cut(s) 15, 85, 137, 149, 163, 189, 317, 372, 415
CviKI_1 RGCY 9 cut(s) 15, 85, 137, 149, 163, 189, 317, 372, 415
CviQI GTAC 1 cut(s) 169
Eco32I GATATC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 365
EcoRV GATATC 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 3 cut(s) 74, 236, 291
FaiI YATR 8 cut(s) 72, 113, 167, 234, 289, 310, 375, 429
FatI CATG 3 cut(s) 70, 232, 287
Fnu4HI GCNGC 3 cut(s) 24, 75, 416
FokI GGATG 2 cut(s) 103, 185
Fsp4HI GCNGC 3 cut(s) 24, 75, 416
FspBI CTAG 3 cut(s) 86, 273, 342
GlaI GCGC 1 cut(s) 339
GluI GCNGC 3 cut(s) 24, 75, 416
HaeIII GGCC 2 cut(s) 137, 163
HhaI GCGC 1 cut(s) 340
Hin1II CATG 3 cut(s) 74, 236, 291
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 1 cut(s) 220
HphI GGTGA 1 cut(s) 355
Hpy188I TCNGA 1 cut(s) 422
Hpy188III TCNNGA 2 cut(s) 47, 438
HpyAV CCTTC 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 55, 94, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 195
Hsp92II CATG 3 cut(s) 74, 236, 291
HspAI GCGC 1 cut(s) 338
LmnI GCTCC 3 cut(s) 236, 314, 423
LpnPI CCDG 6 cut(s) 44, 60, 80, 352, 379, 391
Lsp1109I GCAGC 2 cut(s) 10, 402
LweI GCATC 4 cut(s) 81, 207, 244, 288
MaeI CTAG 3 cut(s) 86, 273, 342
MaeIII GTNAC 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 17, 380
MnlI CCTC 6 cut(s) 91, 124, 166, 169, 371, 382
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 415
MspR9I CCNGG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 367
MvnI CGCG 2 cut(s) 77, 338
MwoI GCNNNNNNNGC 2 cut(s) 91, 195
NlaIII CATG 3 cut(s) 74, 236, 291
NlaIV GGNNCC 2 cut(s) 136, 316
NspI RCATGY 2 cut(s) 74, 291
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 3 cut(s) 25, 76, 417
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 2 cut(s) 136, 316
PspPI GGNCC 2 cut(s) 135, 161
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 3 cut(s) 24, 75, 416
Sau96I GGNCC 2 cut(s) 135, 161
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 33
SetI ASST 8 cut(s) 12, 63, 87, 102, 180, 232, 308, 417
SfaNI GCATC 4 cut(s) 81, 207, 244, 288
SfcI CTRYAG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 2 cut(s) 17, 380
SsiI CCGC 1 cut(s) 75
SspMI CTAG 3 cut(s) 86, 273, 342
StyD4I CCNGG 1 cut(s) 365
TasI AATT 2 cut(s) 17, 380
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 130
TseI GCWGC 2 cut(s) 23, 415
TspDTI ATGAA 2 cut(s) 20, 81
TspGWI ACGGA 2 cut(s) 191, 327
TspRI CASTG 1 cut(s) 130
XapI RAATTY 1 cut(s) 380
XceI RCATGY 2 cut(s) 74, 291
XspI CTAG 3 cut(s) 86, 273, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.