Rh7CG371000

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000124
Physical Location & Seq
Forward (+)
46608563 .. 46609049
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG371000.1

Sequence Viewer

Length: 417 bp
ATGGTCCACAACATTGACCTCTCTAACCACACCGTGTCCATTCACGGTCACAACTTTCCCGTCAATGCCTTGGAGTTCAGTCGTATAATGGGAGTGCTTGACGGGGGTGTAGATATAGAGCTGGGGGCTACCATAGACGCAGGAGAATACGGTGTGTTTGTGCAGGACTTGTGCGACGGAGAAGGTTGGATACAGGTCTATCTGTTGAAGGAGATTGTCATGAACCGGAGTGATGTGGATGACACGTTCCGTATTGCATTTACAATGCTTGCATTGGCTCTGGTGCTGTGCCCAGGCACCGGTGACGACGTCGATCCATCCTTTGTATTCCCGCTTTTGGAGACGCGGGAGATTAGGAAGAAAAATTGGGCTTCATTCTGTGTGAAAACATTACTGGAAGCTGTTACTGCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

138

Amino Acids

15.24

Weight (kDa)

4.49

Isoelectric Point (pI)

24.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 296
AccII CGCG 1 cut(s) 346
AciI CCGC 2 cut(s) 332, 346
AclWI GGATC 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 309
AdeI CACNNNGTG 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 299, 337
AflIII ACRYGT 1 cut(s) 243
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 292
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 2 cut(s) 121, 401
AluI AGCT 2 cut(s) 121, 401
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 1 cut(s) 308
AsiGI ACCGGT 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 296
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BccI CCATC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 335
BfuI GTATCC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 69, 292
BsaWI WCCGGW 2 cut(s) 225, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 337
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 69, 292
BseGI GGATG 2 cut(s) 244, 317
BseLI CCNNNNNNNGG 2 cut(s) 299, 337
BseNI ACTGG 1 cut(s) 399
BseSI GKGCMC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 296
BshTI ACCGGT 1 cut(s) 299
BsiSI CCGG 2 cut(s) 226, 300
BslI CCNNNNNNNGG 2 cut(s) 299, 337
BsmAI GTCTC 1 cut(s) 335
BsmBI CGTCTC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 2 cut(s) 332, 346
BspFNI CGCG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 1 cut(s) 399
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 69, 292
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 34, 47, 152
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 270
BstF5I GGATG 2 cut(s) 244, 317
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 1 cut(s) 346
BsuI GTATCC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 244, 317
Cac8I GCNNGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 2 cut(s) 146, 352
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 121, 128, 278, 371, 401
CviKI_1 RGCY 5 cut(s) 121, 128, 278, 371, 401
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraIII CACNNNGTG 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 1 cut(s) 223
FaiI YATR 4 cut(s) 86, 116, 134, 221
FatI CATG 1 cut(s) 219
FauI CCCGC 2 cut(s) 339, 339
FokI GGATG 2 cut(s) 251, 304
GsaI CCCAGC 1 cut(s) 125
HapII CCGG 2 cut(s) 226, 300
HgaI GACGC 2 cut(s) 146, 352
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 223
HpaII CCGG 2 cut(s) 226, 300
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 3 cut(s) 179, 311, 314
HpyAV CCTTC 2 cut(s) 176, 202
HpyCH4III ACNGT 3 cut(s) 34, 47, 152
HpyCH4IV ACGT 2 cut(s) 245, 309
HpyCH4V TGCA 3 cut(s) 163, 257, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpySE526I ACGT 2 cut(s) 245, 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 1 cut(s) 313
MaeII ACGT 2 cut(s) 245, 309
MaeIII GTNAC 3 cut(s) 47, 302, 403
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 1 cut(s) 29
MspI CCGG 2 cut(s) 226, 300
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 1 cut(s) 313
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 2 cut(s) 47, 302
PagI TCATGA 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 308
PinAI ACCGGT 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 308
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 293
SetI ASST 7 cut(s) 21, 123, 187, 198, 248, 312, 403
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 364
SsiI CCGC 2 cut(s) 332, 346
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 3 cut(s) 34, 47, 152
TaiI ACGT 2 cut(s) 248, 312
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 364
TseFI GTSAC 2 cut(s) 47, 302
Tsp45I GTSAC 2 cut(s) 47, 302
TspDTI ATGAA 2 cut(s) 236, 363
TspGWI ACGGA 2 cut(s) 192, 239
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 4
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.