RchiOBHm_Chr0c11g0499471

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000101
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
ATGATAGCCACCGGTGTCGCCCCCGCCTCCTGCACTTACACTATACTCATCACGGCACTTGCAACACACTCATCTTCTGATGTCAATTTTGTTGGGTATGCCAAGAAGTACTTTTTGGAAATGTTGGTTAAGGGGATGAAGCCCCATTCTACCTCCTACACGATTGTGTTCGATGCCATTGCCTGCCGGGAGTCGGTGGAGAAGGCCAGGGAGTTCCTTGAGCAGATACAAGCAAAGGGGTTCGTCCCTGAATCCAAAGTTTTTCATTTTGAAGAAACCCACCTCGCAGAAGCAATGAAAGGAATGAAGATGTATGATGACCTTGTCTGCAATACCAATGATAAGGATGTGCAAAAAGTAGTCCGCAAGTGGCGCACCAAAAGCGACTGCCTCTACAAAAATTTGTTTAAAATGTTCAAGGCTTTGATTGAGGATGGCAATGCAGACCAGGCCATGGAGCTTTATAAGCGCCATGTTGAGACGGGTATGCTGCCCATGGTCGTACCCCACACCTGTGTTATTGAAGCCTTCCTAAAGTTTGGCAACACCAAGGGTGCTCTGGAGGCGTACTGGGGCATGTTAGCTGCTGGGGTTGCCCCAAACCCCTACACTTACACTGTTTTAATCAAGGGACTCACTGCTGACCCCAACTTCTCTGGAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGGATGAGGCCTAATGCTGCTACCTACACTGCTGTGATAGAGAGCTTTGCAAAGCAAGAGGACGAGGCATCTGAGAAGGAGTGCAAAGAGTTGGTGGAGGTGATGATGGGTAAGGGGTTTGTGCCAAACGCAAAGGCTATGATGGAGGTTCTAAAGGGAAGGCCAACACCAGTAATAAGAAGGGTCATGAACATTGTTCTTTCCAAGTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

304

Amino Acids

33.94

Weight (kDa)

8.51

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 170 - 212 3.7e-08 PPR repeat family
TPR_24 PF23276 170 - 253 1.2e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 454
AciI CCGC 2 cut(s) 24, 364
AcsI RAATTY 1 cut(s) 400
AfaI GTAC 3 cut(s) 110, 504, 569
AfiI CCNNNNNNNGG 2 cut(s) 193, 454
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 4 cut(s) 272, 418, 524, 907
AjnI CCWGG 2 cut(s) 206, 447
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AleI CACNNNNGTG 3 cut(s) 164, 513, 728
AluBI AGCT 3 cut(s) 460, 584, 741
AluI AGCT 3 cut(s) 460, 584, 741
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 1 cut(s) 473
AoxI GGCC 4 cut(s) 204, 450, 704, 857
ApeKI GCWGC 3 cut(s) 490, 584, 713
ApoI RAATTY 1 cut(s) 400
AsiGI ACCGGT 1 cut(s) 11
AspLEI GCGC 2 cut(s) 375, 471
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 808
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 3 cut(s) 477, 571, 700
BccI CCATC 4 cut(s) 428, 682, 796, 832
BceAI ACGGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 208, 449
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 472
BisI GCNGC 3 cut(s) 491, 585, 714
BlsI GCNGC 3 cut(s) 492, 586, 715
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 3 cut(s) 188, 208, 449
BmrFI CCNGG 3 cut(s) 188, 208, 449
BmrI ACTGGG 1 cut(s) 580
BmsI GCATC 3 cut(s) 163, 652, 773
BmuI ACTGGG 1 cut(s) 580
BpmI CTGGAG 2 cut(s) 581, 678
BpuEI CTTGAG 2 cut(s) 239, 701
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 207, 453, 495, 549
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 454
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 575, 866
Bse3DI GCAATG 3 cut(s) 177, 300, 445
BseBI CCWGG 2 cut(s) 208, 449
BseDI CCNNGG 4 cut(s) 207, 453, 495, 549
BseGI GGATG 4 cut(s) 141, 352, 439, 705
BseLI CCNNNNNNNGG 2 cut(s) 193, 454
BseMI GCAATG 3 cut(s) 177, 300, 445
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 2 cut(s) 575, 866
BseXI GCAGC 3 cut(s) 477, 571, 700
BseYI CCCAGC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 16
BshFI GGCC 4 cut(s) 206, 452, 706, 859
BshTI ACCGGT 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 559
BsiSI CCGG 2 cut(s) 12, 187
BslFI GGGAC 2 cut(s) 230, 645
BslI CCNNNNNNNGG 2 cut(s) 193, 454
BsmAI GTCTC 1 cut(s) 473
BsmBI CGTCTC 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 230, 645
BsnI GGCC 4 cut(s) 206, 452, 706, 859
Bsp1286I GDGCHC 1 cut(s) 559
Bsp19I CCATGG 2 cut(s) 453, 495
BspACI CCGC 2 cut(s) 24, 364
BspANI GGCC 4 cut(s) 206, 452, 706, 859
BspCNI CTCAG 1 cut(s) 760
BspHI TCATGA 1 cut(s) 882
BsrDI GCAATG 3 cut(s) 177, 300, 445
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 2 cut(s) 575, 866
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 4 cut(s) 207, 453, 495, 549
BssT1I CCWWGG 3 cut(s) 453, 495, 549
Bst2UI CCWGG 2 cut(s) 208, 449
Bst4CI ACNGT 1 cut(s) 619
BstC8I GCNNGC 2 cut(s) 184, 677
BstDEI CTNAG 1 cut(s) 768
BstDSI CCRYGG 2 cut(s) 453, 495
BstF5I GGATG 4 cut(s) 141, 352, 439, 705
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 2 cut(s) 375, 471
BstMAI GTCTC 1 cut(s) 473
BstMWI GCNNNNNNNGC 6 cut(s) 372, 381, 449, 466, 563, 593
BstNI CCWGG 2 cut(s) 208, 449
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 3 cut(s) 186, 206, 447
BstV1I GCAGC 3 cut(s) 477, 571, 700
BsuRI GGCC 4 cut(s) 206, 452, 706, 859
BtgI CCRYGG 2 cut(s) 453, 495
BtsCI GGATG 4 cut(s) 141, 352, 439, 705
BtsI GCAGTG 2 cut(s) 636, 723
BtsIMutI CAGTG 3 cut(s) 615, 636, 723
Cac8I GCNNGC 2 cut(s) 184, 677
CciI TCATGA 1 cut(s) 882
CfoI GCGC 2 cut(s) 375, 471
Cfr10I RCCGGY 1 cut(s) 11
Csp6I GTAC 3 cut(s) 109, 503, 568
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 5 cut(s) 454, 473, 496, 577, 883
CviQI GTAC 3 cut(s) 109, 503, 568
DdeI CTNAG 1 cut(s) 768
DraI TTTAAA 1 cut(s) 409
Eco130I CCWWGG 3 cut(s) 453, 495, 549
Eco147I AGGCCT 1 cut(s) 706
EcoRII CCWGG 2 cut(s) 206, 447
EcoT14I CCWWGG 3 cut(s) 453, 495, 549
ErhI CCWWGG 3 cut(s) 453, 495, 549
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 5 cut(s) 457, 476, 499, 580, 886
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 659, 691
FaqI GGGAC 2 cut(s) 230, 645
FatI CATG 5 cut(s) 453, 472, 495, 576, 882
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 491, 585, 714
FokI GGATG 4 cut(s) 148, 359, 446, 712
Fsp4HI GCNGC 3 cut(s) 491, 585, 714
GlaI GCGC 2 cut(s) 374, 470
GluI GCNGC 3 cut(s) 491, 585, 714
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 2 cut(s) 581, 678
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 4 cut(s) 206, 452, 706, 859
HapII CCGG 2 cut(s) 12, 187
HhaI GCGC 2 cut(s) 375, 471
Hin1II CATG 5 cut(s) 457, 476, 499, 580, 886
Hin6I GCGC 2 cut(s) 373, 469
HinP1I GCGC 2 cut(s) 373, 469
HinfI GANTC 3 cut(s) 191, 251, 633
HpaII CCGG 2 cut(s) 12, 187
HphI GGTGA 1 cut(s) 808
Hpy188I TCNGA 2 cut(s) 79, 769
Hpy188III TCNNGA 3 cut(s) 560, 657, 883
HpyAV CCTTC 6 cut(s) 196, 538, 766, 849, 870, 901
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4V TGCA 7 cut(s) 33, 62, 330, 352, 443, 746, 780
HpyF10VI GCNNNNNNNGC 6 cut(s) 372, 381, 449, 466, 563, 593
HpyF3I CTNAG 1 cut(s) 768
Hsp92II CATG 5 cut(s) 457, 476, 499, 580, 886
HspAI GCGC 2 cut(s) 373, 469
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 3 cut(s) 477, 571, 700
LweI GCATC 3 cut(s) 163, 652, 773
MboII GAAGA 3 cut(s) 66, 284, 319
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 2 cut(s) 85, 400
MlyI GAGTC 2 cut(s) 200, 627
MseI TTAA 3 cut(s) 129, 408, 623
MslI CAYNNNNRTG 3 cut(s) 164, 513, 728
MspI CCGG 2 cut(s) 12, 187
MspR9I CCNGG 3 cut(s) 188, 208, 449
MvaI CCWGG 2 cut(s) 208, 449
MwoI GCNNNNNNNGC 6 cut(s) 372, 381, 449, 466, 563, 593
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 2 cut(s) 453, 495
NlaIII CATG 5 cut(s) 457, 476, 499, 580, 886
NspI RCATGY 1 cut(s) 580
OliI CACNNNNGTG 3 cut(s) 164, 513, 728
PagI TCATGA 1 cut(s) 882
PceI AGGCCT 1 cut(s) 706
PfeI GAWTC 1 cut(s) 251
PflFI GACNNNGTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 454
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 3 cut(s) 492, 586, 715
PleI GAGTC 2 cut(s) 199, 627
PpsI GAGTC 2 cut(s) 199, 627
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 206, 447
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 206, 447
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 3 cut(s) 110, 504, 569
RsaNI GTAC 3 cut(s) 109, 503, 568
RseI CAYNNNNRTG 3 cut(s) 164, 513, 728
SaqAI TTAA 3 cut(s) 129, 408, 623
SatI GCNGC 3 cut(s) 491, 585, 714
ScaI AGTACT 1 cut(s) 110
SchI GAGTC 2 cut(s) 200, 627
ScrFI CCNGG 3 cut(s) 188, 208, 449
SduI GDGCHC 1 cut(s) 559
SfaNI GCATC 3 cut(s) 163, 652, 773
SgrAI CRCCGGYG 1 cut(s) 11
SmiMI CAYNNNNRTG 3 cut(s) 164, 513, 728
SmlI CTYRAG 2 cut(s) 218, 680
SmoI CTYRAG 2 cut(s) 218, 680
Sse9I AATT 2 cut(s) 85, 400
SseBI AGGCCT 1 cut(s) 706
SsiI CCGC 2 cut(s) 24, 364
StuI AGGCCT 1 cut(s) 706
StyD4I CCNGG 3 cut(s) 186, 206, 447
StyI CCWWGG 3 cut(s) 453, 495, 549
TaaI ACNGT 1 cut(s) 619
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 85, 400
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 129, 408, 623
Tru9I TTAA 3 cut(s) 129, 408, 623
TscAI CASTG 3 cut(s) 622, 643, 730
TseI GCWGC 3 cut(s) 490, 584, 713
TspDTI ATGAA 5 cut(s) 152, 254, 311, 320, 899
TspRI CASTG 3 cut(s) 622, 643, 730
Tth111I GACNNNGTC 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 454
XapI RAATTY 1 cut(s) 400
XceI RCATGY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.