FvH4_1g25700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000153
Physical Location & Seq
Reverse (-)
17589749 .. 17590702
954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25700.t1

Sequence Viewer

Length: 954 bp
ATGGTTCCTTTTAGATTTACTCTTGACAAATCATGTGATGATGAGAAGTTAAAGATTCTTATAGCAGGGGCTTCTAGTGTTAAAGGGAGCAGCCGCCGTTTTGCAAATTGGGTGAAACATTTTTGGGGAGTCATAAAGGATGGTGTGCTAATCCCAGGCGAAGGTTTCAACTCGGGTTGCTGTTTGGCAGCCACGCTTGCTCTTTGGTTAACCAAGTATGTTTCCATTGAATTCTCTTATGAGTTCGTCGAGCAGTGTGTGTATCCCCTGGTGGTTGCCATAGTGACAGGTCATAGGTTTCCTTTAGCTTCGTTGTTCCTTGGTCATGTTTACCGTTTACTAGACTTCATTGTTGCTGATGAGCTAGAAAGTGTTGGTCGGCCCGGAGTCACCACTTTGGTTTCCACCACGTTTCTACAGGCATTTATTTGGGAGCACTTCAAGTGTTTGGAAGTAAAACTACTAACCTCGAGCTCATCTTTGGAATTGTATAACAATGGCATATTAGACAAGAGTGTTTTATATCTGCCGCTGATGCTTCCTTTGTTGTGCCACTGGTTTAAAAGGAGGCAAGACAAAAAAGTGTTTGCTCCAATAATGTTGGATAATTCAGAGAACTTTGCTCGGCAGCCTTATATCCAGAGGCATGGCTTCAAAGCATTTTCATTTTCTGGTAGGAAAGAGCAGTGTGCAACATCTTTGGGCCGTGTCGAGCTTTACTTGACTAATTACATAGGTTTTATTCCTTCCTTTGGCGAGGACAAAGAAGCCTTAATTTTCAATCCGGTGGTTTATTATCTTGATAAGGTTATGAGGCAACTCAGTTGTTCTCAAGAGGTTCCCGTGCGTCTCCCTCTTTCCATTAGAGCTATCGGGATGGCTAGGAAGCTTTCACCTAGAGAAGTTGATTGTGTTCATGATTTCTCTGGCAGACTTGCAGACATCCCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

318

Amino Acids

35.95

Weight (kDa)

8.65

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 31 - 291 1.7e-10 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 530
AcsI RAATTY 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 161, 752
AgsI TTSAA 5 cut(s) 169, 230, 442, 655, 781
AjnI CCWGG 2 cut(s) 154, 267
AluBI AGCT 6 cut(s) 308, 364, 474, 715, 869, 889
AluI AGCT 6 cut(s) 308, 364, 474, 715, 869, 889
Alw21I GWGCWC 2 cut(s) 438, 476
Alw26I GTCTC 1 cut(s) 854
Ama87I CYCGRG 2 cut(s) 172, 469
AoxI GGCC 2 cut(s) 380, 703
ApeKI GCWGC 3 cut(s) 90, 188, 628
ApoI RAATTY 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 381, 703
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 3 cut(s) 124, 382, 885
AvaI CYCGRG 2 cut(s) 172, 469
BanII GRGCYC 1 cut(s) 476
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
Bbv12I GWGCWC 2 cut(s) 438, 476
BbvI GCAGC 3 cut(s) 102, 200, 640
BccI CCATC 2 cut(s) 134, 871
BceAI ACGGC 2 cut(s) 81, 690
BciT130I CCWGG 2 cut(s) 156, 269
BciVI GTATCC 1 cut(s) 273
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 5 cut(s) 75, 341, 365, 882, 897
BfmI CTRYAG 1 cut(s) 416
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 5 cut(s) 91, 94, 189, 530, 629
BlsI GCNGC 5 cut(s) 92, 95, 190, 531, 630
Bme1390I CCNGG 3 cut(s) 156, 269, 384
BmeT110I CYCGRG 2 cut(s) 172, 469
BmgT120I GGNCC 2 cut(s) 381, 703
BmiI GGNNCC 2 cut(s) 6, 840
BmrFI CCNGG 3 cut(s) 156, 269, 384
BmsI GCATC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 816
BpuMI CCSGG 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 154, 267, 319
BsaWI WCCGGW 1 cut(s) 784
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 752
Bse1I ACTGG 1 cut(s) 560
BseBI CCWGG 2 cut(s) 156, 269
BseDI CCNNGG 3 cut(s) 154, 267, 319
BseGI GGATG 3 cut(s) 145, 882, 942
BseLI CCNNNNNNNGG 2 cut(s) 161, 752
BseMII CTCAG 1 cut(s) 835
BseNI ACTGG 1 cut(s) 560
BseXI GCAGC 3 cut(s) 102, 200, 640
BshFI GGCC 2 cut(s) 382, 705
BsiHKAI GWGCWC 2 cut(s) 438, 476
BsiHKCI CYCGRG 2 cut(s) 172, 469
BsiSI CCGG 2 cut(s) 384, 785
BslI CCNNNNNNNGG 2 cut(s) 161, 752
BsmAI GTCTC 1 cut(s) 854
BsmBI CGTCTC 1 cut(s) 854
BsnI GGCC 2 cut(s) 382, 705
BsoBI CYCGRG 2 cut(s) 172, 469
Bsp1286I GDGCHC 2 cut(s) 438, 476
BspACI CCGC 2 cut(s) 94, 530
BspANI GGCC 2 cut(s) 382, 705
BspCNI CTCAG 1 cut(s) 834
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 2 cut(s) 6, 840
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 154, 267, 319
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 2 cut(s) 156, 269
Bst4CI ACNGT 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 821
BstF5I GGATG 3 cut(s) 145, 882, 942
BstMAI GTCTC 1 cut(s) 854
BstMWI GCNNNNNNNGC 2 cut(s) 197, 535
BstNI CCWGG 2 cut(s) 156, 269
BstSCI CCNGG 3 cut(s) 154, 267, 382
BstSFI CTRYAG 1 cut(s) 416
BstV1I GCAGC 3 cut(s) 102, 200, 640
BstXI CCANNNNNNTGG 1 cut(s) 647
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 2 cut(s) 382, 705
BtsCI GGATG 3 cut(s) 145, 882, 942
BtsI GCAGTG 2 cut(s) 260, 692
BtsIMutI CAGTG 3 cut(s) 260, 553, 692
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 916
Cfr13I GGNCC 2 cut(s) 381, 703
CseI GACGC 1 cut(s) 836
CviAII CATG 4 cut(s) 33, 326, 647, 917
DdeI CTNAG 1 cut(s) 821
DraI TTTAAA 1 cut(s) 562
Ecl136II GAGCTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 476
Eco53kI GAGCTC 1 cut(s) 474
Eco88I CYCGRG 2 cut(s) 172, 469
EcoICRI GAGCTC 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 154, 267
EcoT14I CCWWGG 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 4 cut(s) 36, 329, 650, 920
FatI CATG 4 cut(s) 32, 325, 646, 916
Fnu4HI GCNGC 5 cut(s) 91, 94, 189, 530, 629
FokI GGATG 3 cut(s) 152, 889, 929
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 5 cut(s) 91, 94, 189, 530, 629
FspBI CTAG 5 cut(s) 75, 341, 365, 882, 897
GluI GCNGC 5 cut(s) 91, 94, 189, 530, 629
HaeIII GGCC 2 cut(s) 382, 705
HapII CCGG 2 cut(s) 384, 785
HgaI GACGC 1 cut(s) 836
Hin1II CATG 4 cut(s) 36, 329, 650, 920
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 3 cut(s) 55, 129, 387
HpaI GTTAAC 1 cut(s) 210
HpaII CCGG 2 cut(s) 384, 785
HphI GGTGA 3 cut(s) 124, 382, 885
Hpy166II GTNNAC 3 cut(s) 210, 331, 338
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 6 cut(s) 23, 640, 800, 833, 874, 917
Hpy8I GTNNAC 3 cut(s) 210, 331, 338
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 155, 756
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 3 cut(s) 104, 692, 938
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 535
HpyF3I CTNAG 1 cut(s) 821
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 4 cut(s) 36, 329, 650, 920
KspAI GTTAAC 1 cut(s) 210
LmnI GCTCC 3 cut(s) 87, 433, 595
Lsp1109I GCAGC 3 cut(s) 102, 200, 640
LweI GCATC 1 cut(s) 525
MaeI CTAG 5 cut(s) 75, 341, 365, 882, 897
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 283, 388
MhlI GDGCHC 2 cut(s) 438, 476
MluCI AATT 6 cut(s) 106, 230, 485, 607, 727, 774
MlyI GAGTC 2 cut(s) 138, 396
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 7 cut(s) 478, 561, 636, 751, 807, 829, 864
MseI TTAA 5 cut(s) 50, 81, 209, 561, 773
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 2 cut(s) 384, 785
MspR9I CCNGG 3 cut(s) 156, 269, 384
MvaI CCWGG 2 cut(s) 156, 269
MwoI GCNNNNNNNGC 2 cut(s) 197, 535
NciI CCSGG 1 cut(s) 384
NlaIII CATG 4 cut(s) 36, 329, 650, 920
NlaIV GGNNCC 2 cut(s) 6, 840
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 2 cut(s) 283, 388
PaeR7I CTCGAG 1 cut(s) 469
PagI TCATGA 1 cut(s) 916
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 5 cut(s) 92, 95, 190, 531, 630
PleI GAGTC 2 cut(s) 137, 395
PpsI GAGTC 2 cut(s) 137, 395
Psp124BI GAGCTC 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 154, 267
PspGI CCWGG 2 cut(s) 154, 267
PspN4I GGNNCC 2 cut(s) 6, 840
PspPI GGNCC 2 cut(s) 381, 703
PspXI VCTCGAGB 1 cut(s) 469
SacI GAGCTC 1 cut(s) 476
SaqAI TTAA 5 cut(s) 50, 81, 209, 561, 773
SatI GCNGC 5 cut(s) 91, 94, 189, 530, 629
Sau96I GGNCC 2 cut(s) 381, 703
SchI GAGTC 2 cut(s) 138, 396
ScrFI CCNGG 3 cut(s) 156, 269, 384
SduI GDGCHC 2 cut(s) 438, 476
SfaNI GCATC 1 cut(s) 525
SfcI CTRYAG 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 469
SmlI CTYRAG 2 cut(s) 469, 831
SmoI CTYRAG 2 cut(s) 469, 831
Sse9I AATT 6 cut(s) 106, 230, 485, 607, 727, 774
SsiI CCGC 2 cut(s) 94, 530
SspMI CTAG 5 cut(s) 75, 341, 365, 882, 897
SstI GAGCTC 1 cut(s) 476
StyD4I CCNGG 3 cut(s) 154, 267, 382
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 413
TaqI TCGA 3 cut(s) 249, 470, 711
TasI AATT 6 cut(s) 106, 230, 485, 607, 727, 774
TauI GCSGC 2 cut(s) 96, 532
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 5 cut(s) 50, 81, 209, 561, 773
Tru9I TTAA 5 cut(s) 50, 81, 209, 561, 773
TscAI CASTG 3 cut(s) 260, 560, 692
TseFI GTSAC 2 cut(s) 283, 388
TseI GCWGC 3 cut(s) 90, 188, 628
Tsp45I GTSAC 2 cut(s) 283, 388
TspDTI ATGAA 3 cut(s) 337, 654, 905
TspRI CASTG 3 cut(s) 260, 560, 692
XapI RAATTY 1 cut(s) 230
XhoI CTCGAG 1 cut(s) 469
XspI CTAG 5 cut(s) 75, 341, 365, 882, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.