Rroxscaffold_7G00194900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000153
Physical Location & Seq
Reverse (-)
37008325 .. 37009897
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194900.1

Sequence Viewer

Length: 435 bp
ATGAGTTCTCCTTCTCCTCGTGGTCCTCCAGTTTATCTTGAGTTGTCCGAGTCCGAACACGGAGAGGATTCTCAAGGGGCTCCAACCGATTCTTCTAAAGAGGACCATACTAATTTTTTAAAAGAGGTATCCGATCATCCGCTCGAAGTGCCTCTCATAATTAATCAAGATGGTGACGATCAGGTTGATGCGAAATTTGAGCCTTTGCAGCATAGTCCGAGTGAGAGTGAAAATAATGATCAGATTAGGGAATCACTTCCTTCTCTTGAGGAGCAGAATCACCCTTTAGATGTTGGTAAGAGTAATGACGGGATTGGTCATGACACGGCAGTACATGCCTTATTGGTTGAGTCCGATAAGCATGCTCCAGGGATTGATAAGATGACTATCATTGAGACTCAAAGCCTTGACCCAAGCTTGCTGTTAAAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.68

Weight (kDa)

4.37

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 142
AciI CCGC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 1 cut(s) 417
AluI AGCT 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 194
AseI ATTAAT 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 23, 103
AsuHPI GGTGA 2 cut(s) 185, 272
AvaII GGWCC 2 cut(s) 23, 103
BanII GRGCYC 1 cut(s) 82
BauI CACGAG 1 cut(s) 18
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 342
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 369
BciVI GTATCC 1 cut(s) 139
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 389
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 2 cut(s) 23, 103
BmgT120I GGNCC 2 cut(s) 23, 103
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 2 cut(s) 12, 351
BpuEI CTTGAG 3 cut(s) 57, 59, 287
BsaBI GATNNNNATC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 386
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 136
BseJI GATNNNNATC 1 cut(s) 386
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 2 cut(s) 6, 284
BseXI GCAGC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 3 cut(s) 133, 178, 238
BspACI CCGC 1 cut(s) 140
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 142
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 3 cut(s) 133, 178, 238
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 363, 419
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 3 cut(s) 136, 181, 241
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 3 cut(s) 133, 178, 238
BstMWI GCNNNNNNNGC 3 cut(s) 148, 208, 335
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 2 cut(s) 338, 365
BstSCI CCNGG 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 220
BsuI GTATCC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 363, 419
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 23, 103
Csp6I GTAC 1 cut(s) 332
CviAII CATG 3 cut(s) 320, 335, 362
CviJI RGCY 4 cut(s) 80, 202, 405, 417
CviKI_1 RGCY 4 cut(s) 80, 202, 405, 417
CviQI GTAC 1 cut(s) 332
DpnI GATC 3 cut(s) 135, 180, 240
DpnII GATC 3 cut(s) 133, 178, 238
DraI TTTAAA 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 23, 103
EcoRII CCWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 3 cut(s) 323, 338, 365
FaiI YATR 6 cut(s) 108, 158, 213, 321, 336, 363
FatI CATG 3 cut(s) 319, 334, 361
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 209
GluI GCNGC 1 cut(s) 209
GsuI CTGGAG 2 cut(s) 12, 351
Hin1II CATG 3 cut(s) 323, 338, 365
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 7 cut(s) 50, 68, 89, 251, 277, 350, 397
HphI GGTGA 2 cut(s) 185, 272
Hpy188I TCNGA 6 cut(s) 49, 55, 133, 219, 243, 355
Hpy188III TCNNGA 4 cut(s) 38, 167, 266, 320
HpyAV CCTTC 2 cut(s) 21, 270
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 208, 335
Hsp92II CATG 3 cut(s) 323, 338, 365
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 133, 178, 238
LmnI GCTCC 3 cut(s) 85, 271, 370
LpnPI CCDG 4 cut(s) 42, 167, 354, 381
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 173
MalI GATC 3 cut(s) 135, 180, 240
MbiI CCGCTC 1 cut(s) 142
MboI GATC 3 cut(s) 133, 178, 238
MboII GAAGA 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 3 cut(s) 112, 159, 194
MlyI GAGTC 3 cut(s) 59, 359, 391
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 7 cut(s) 27, 36, 58, 94, 118, 162, 262
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 4 cut(s) 119, 162, 425, 433
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 148, 208, 335
NdeII GATC 3 cut(s) 133, 178, 238
NlaIII CATG 3 cut(s) 323, 338, 365
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 2 cut(s) 338, 365
PaeI GCATGC 1 cut(s) 365
PagI TCATGA 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 4 cut(s) 68, 89, 251, 277
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 3 cut(s) 58, 358, 391
PpsI GAGTC 3 cut(s) 58, 358, 391
PshBI ATTAAT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 23, 103
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SaqAI TTAA 4 cut(s) 119, 162, 425, 433
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 3 cut(s) 133, 178, 238
Sau96I GGNCC 2 cut(s) 23, 103
SchI GAGTC 3 cut(s) 59, 359, 391
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 82
SetI ASST 3 cut(s) 129, 186, 419
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 2 cut(s) 23, 103
SmlI CTYRAG 3 cut(s) 38, 72, 266
SmoI CTYRAG 3 cut(s) 38, 72, 266
SphI GCATGC 1 cut(s) 365
Sse9I AATT 3 cut(s) 112, 159, 194
SsiI CCGC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 367
TaqI TCGA 1 cut(s) 144
TasI AATT 3 cut(s) 112, 159, 194
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 4 cut(s) 68, 89, 251, 277
Tru1I TTAA 4 cut(s) 119, 162, 425, 433
Tru9I TTAA 4 cut(s) 119, 162, 425, 433
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 23, 103
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 1 cut(s) 194
XceI RCATGY 2 cut(s) 338, 365
XmnI GAANNNNTTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.