Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009472.1

Orthogroup ID

OG0000153

Physical Location & Seq

Genomic Coordinates Forward (+)

31495 .. 35168

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009472.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

atggcacaaacatctgagtcttctcagcctactgaacttcatgaccaccacttctcactggaagatggtctcattcctgtttccaccgcgggggcctgtgaggtgcctatatgtttccggtatcctgcgaggacccctgcagcttggcctgaatgggtcagctttgaggtgcaacatgaagagcttgaagaggcccttattggagctagatgcgaagatggagtcctgaaactcacacgttcatctgttcttggggggaatttactccttctttggaagatgtttacaatattatgcgaatccctatcgttggatggtaatcccttcaagatagagctaaataaagcgcagaagaagaagctgcagattctgaaaaggggtgcttatgattctaaagaagtgttccgtttctgttactgggtgagacacttttggggctcgatggacggaggcaagtttaagcatggtgcaggtttcgaatctggctgccgggtggaagccatgtttgcttactggttgagcaggttcattttcaccgattttccctatgagaacgtgcagccgcgagtcttcccgttggccattatgctagcagccggtacttgtttttcgctcgctcatctcttccttagtcatctatataggaaacttgatcagatttcaaaggatgataaagaaggtgcggggcagtatggcattgactctctagtatctagttttttccttcaagtatttgtatgggagagattcgaaggtttggctgtggaacccgtaactcctgagtcccttcaccaccttgagggagagggtaactcatcacctttcctagagccggttgagctgcttctaaccactagtgcgcagtccataatagcatgtggtgatttctttgaccccgtgatggagaagtattctcctcatagagttaagaggcaatttggcatcgaccaggatgtgccatcgcatctatcttacggtggacatcttggggttgcatcatgggtttcactcggacagatggtatttcctgcagggctgtgcgagtttaggaggtttattcaaaccggtgggactaggttgcgtccgaaagccactagtgagaataagagactactctacagtagcactgtcatgggtgtcatgtctagacttaaccttccctatactgaggtatactcgaatggtataaagcgtgtggttggtcacctcaagggtggtaaaagtggagatgatcctgaagtagagttgccagctgccggaatggagaaatgtagcaagagtgcaacaaagggtaaagtcagggctcccgaggatggaggagagagtaaatggaaggtttgccgcttcaaacctaaggtggaaaaagatcgtatccctcctccagtagtcaagagtgcctctggtgttaaagtgatactgccatcgagtttggcttgtgaaaaagggaagaagaggaaagctgcttctaccctgagaccaagtggggttattaagaggaaggttgcagatgatgcctcacctgctgtccttaggcggagttctcgcgtggccaacatgaacttttataaacgtaaaccgtcgtccaagggtgatgtttatgttgatcttagtgatgggccaagcaccgacggggatgatagccccctgagtgatgaggagaatgagtctgatacttatgagggaaagacctgcgatgatggtagccaggtggagtcttttgaagatgaggatggtcagggtaatccaactgtagctttgatgggagaggatagctgcggtgataaccaagaatctgctgtaaatgttggtccttgtgcagataattgtaataagcaagacattggcattagtgatttggcgaaagaatctactgcggacgatagtctttgtgaggatgaccatagtgagcggggcggatcagatttgttaggggttggagggacattgtttgagccccacctccctgagacagcaccgggggacaacgacgtcactgcgacaatcttggtcagtagaggaactccactttgtgcttcatcttctcgctctcttgctcctaactcagataaatcaggaagtgtgttgagggctgatttggagatgcggtttagaaagtttcttgcttgttttgacactgaggatcgcttaagtatttctattgatgacattgcgcgcccattgagtggtatcagatcttcatttgagggtgggaaagtcccctcggagttcgtggctccacttactaaatttgctgaaaggtacggtggaggtagtttctctagcttatttgtagatggaaagagtgcccgtcagaaacaaaaattggttgaggagtttggttctgtgttgtacagcatggagactgaagaagtgaaaaatgaggaaacttttttaatttggagggatgcatgccgtgacatcatagattgggggcttaaggtcgacttcatgcttgattatttgaagcaggctgctatggatttctttggttatatgctcagaccccatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

837

Amino Acids

92.28

Weight (kDa)

5.41

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis	RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata	RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora	Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa	Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha	Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana	Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1566
AarI	CACCTGC	1 cut(s)	1528
AasI	GACNNNNNNGTC	1 cut(s)	1988
AatII	GACGTC	1 cut(s)	1992
Acc16I	TGCGCA	1 cut(s)	861
Acc36I	ACCTGC	4 cut(s)	461, 513, 1528, 1697
AccB1I	GGYRCC	1 cut(s)	103
AccB7I	CCANNNNNTGG	1 cut(s)	2183
AccBSI	CCGCTC	1 cut(s)	1909
AccI	GTMKAC	2 cut(s)	1173, 2442
AccII	CGCG	4 cut(s)	89, 565, 1545, 2173
AclWI	GGATC	3 cut(s)	1226, 1924, 2148
AcoI	YGGCCR	2 cut(s)	579, 1548
AcsI	RAATTY	2 cut(s)	259, 2246
AcuI	CTGAAG	2 cut(s)	1257, 2385
AcyI	GRCGYC	1 cut(s)	1989
AdeI	CACNNNGTG	1 cut(s)	2030
AfaI	GTAC	3 cut(s)	601, 2261, 2351
AfiI	CCNNNNNNNGG	8 cut(s)	90, 310, 799, 832, 901, 1256, 1313, 2183
AflII	CTTAAG	2 cut(s)	2146, 2435
AflIII	ACRYGT	1 cut(s)	236
AgeI	ACCGGT	1 cut(s)	1064
AgsI	TTSAA	8 cut(s)	188, 328, 663, 728, 1061, 1348, 1721, 2464
AhlI	ACTAGT	2 cut(s)	854, 1094
AjnI	CCWGG	2 cut(s)	948, 1704
AjuI	GAANNNNNNNTTGG	2 cut(s)	2306, 2338
Alw26I	GTCTC	6 cut(s)	74, 418, 1102, 1468, 1961, 2354
AlwI	GGATC	3 cut(s)	1226, 1924, 2148
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	1307
AoxI	GGCC	6 cut(s)	93, 146, 192, 579, 1548, 1616
ApoI	RAATTY	2 cut(s)	259, 2246
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AsiGI	ACCGGT	1 cut(s)	1064
AspLEI	GCGC	4 cut(s)	349, 862, 2173, 2175
AspS9I	GGNCC	5 cut(s)	93, 132, 193, 1616, 1808
AsuC2I	CCSGG	2 cut(s)	491, 1977
AsuHPI	GGTGA	9 cut(s)	433, 526, 782, 810, 893, 1196, 1509, 1601, 1790
AsuII	TTCGAA	2 cut(s)	477, 750
AsuNHI	GCTAGC	1 cut(s)	589
AvaI	CYCGRG	1 cut(s)	1307
AvaII	GGWCC	2 cut(s)	132, 1808
AxyI	CCTNAGG	2 cut(s)	1353, 1529
BaeGI	GKGCMC	1 cut(s)	2308
BalI	TGGCCA	2 cut(s)	581, 1550
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	3 cut(s)	440, 1306, 1956
BarI	GAAGNNNNNNTAC	2 cut(s)	2179, 2211
BbsI	GAAGAC	2 cut(s)	12, 562
BceAI	ACGGC	1 cut(s)	2397
BcgI	CGANNNNNNTGC	2 cut(s)	1976, 2010
BciT130I	CCWGG	2 cut(s)	950, 1706
BciVI	GTATCC	2 cut(s)	132, 1382
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	2 cut(s)	491, 1977
BcoDI	GTCTC	6 cut(s)	74, 418, 1102, 1468, 1961, 2354
BcuI	ACTAGT	2 cut(s)	854, 1094
BfmI	CTRYAG	5 cut(s)	138, 362, 1029, 1117, 1749
BfrI	CTTAAG	2 cut(s)	2146, 2435
BfuAI	ACCTGC	4 cut(s)	461, 513, 1528, 1697
BfuI	GTATCC	2 cut(s)	132, 1382
BglII	AGATCT	1 cut(s)	2192
Bme1390I	CCNGG	4 cut(s)	491, 950, 1706, 1977
Bme18I	GGWCC	2 cut(s)	132, 1808
BmeT110I	CYCGRG	1 cut(s)	1307
BmgT120I	GGNCC	5 cut(s)	93, 132, 193, 1616, 1808
BmiI	GGNNCC	6 cut(s)	94, 105, 134, 768, 1305, 2235
BmrFI	CCNGG	4 cut(s)	491, 950, 1706, 1977
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	7 cut(s)	200, 951, 973, 1004, 1501, 2091, 2395
BmtI	GCTAGC	1 cut(s)	593
BmuI	ACTGGG	1 cut(s)	427
BoxI	GACNNNNGTC	1 cut(s)	1881
BpiI	GAAGAC	2 cut(s)	12, 562
BplI	GAGNNNNNCTC	4 cut(s)	797, 829, 1160, 1192
BpmI	CTGGAG	1 cut(s)	1365
Bpu14I	TTCGAA	2 cut(s)	477, 750
BpuEI	CTTGAG	2 cut(s)	818, 1193
BpuMI	CCSGG	2 cut(s)	491, 1977
BsaBI	GATNNNNATC	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	1989
BsaI	GGTCTC	2 cut(s)	74, 1468
BsaJI	CCNNGG	6 cut(s)	87, 1308, 1584, 1976, 2220, 2506
BsaWI	WCCGGW	2 cut(s)	117, 1064
BsaXI	ACNNNNNCTCC	4 cut(s)	1649, 1679, 2090, 2120
Bsc4I	CCNNNNNNNGG	8 cut(s)	90, 310, 799, 832, 901, 1256, 1313, 2183
Bse118I	RCCGGY	3 cut(s)	596, 832, 1064
Bse1I	ACTGG	4 cut(s)	63, 422, 518, 1382
Bse21I	CCTNAGG	2 cut(s)	1353, 1529
Bse3DI	GCAATG	1 cut(s)	2166
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	950, 1706
BseDI	CCNNGG	6 cut(s)	87, 1308, 1584, 1976, 2220, 2506
BseGI	GGATG	8 cut(s)	319, 673, 958, 1318, 1639, 1735, 1900, 2410
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	8 cut(s)	90, 310, 799, 832, 901, 1256, 1313, 2183
BseMI	GCAATG	1 cut(s)	2166
BseNI	ACTGG	4 cut(s)	63, 422, 518, 1382
BsePI	GCGCGC	1 cut(s)	2171
BseRI	GAGGAG	5 cut(s)	906, 1332, 1368, 1670, 2345
BseSI	GKGCMC	1 cut(s)	2308
BsgI	GTGCAG	3 cut(s)	489, 578, 1836
Bsh1236I	CGCG	4 cut(s)	89, 565, 1545, 2173
BshFI	GGCC	6 cut(s)	95, 148, 194, 581, 1550, 1618
BshNI	GGYRCC	1 cut(s)	103
BshTI	ACCGGT	1 cut(s)	1064
BsiHKCI	CYCGRG	1 cut(s)	1307
BsiSI	CCGG	7 cut(s)	118, 490, 597, 833, 1065, 1257, 1976
BslFI	GGGAC	5 cut(s)	769, 1084, 1954, 1994, 2201
BslI	CCNNNNNNNGG	8 cut(s)	90, 310, 799, 832, 901, 1256, 1313, 2183
BsmAI	GTCTC	6 cut(s)	74, 418, 1102, 1468, 1961, 2354
BsmFI	GGGAC	5 cut(s)	769, 1084, 1954, 1994, 2201
BsnI	GGCC	6 cut(s)	95, 148, 194, 581, 1550, 1618
Bso31I	GGTCTC	2 cut(s)	74, 1468
BsoBI	CYCGRG	1 cut(s)	1307
Bsp119I	TTCGAA	2 cut(s)	477, 750
Bsp1286I	GDGCHC	4 cut(s)	440, 1306, 1956, 2308
Bsp1407I	TGTACA	1 cut(s)	2349
Bsp143I	GATC	7 cut(s)	652, 1231, 1366, 1603, 1916, 2140, 2192
Bsp19I	CCATGG	1 cut(s)	2506
BspANI	GGCC	6 cut(s)	95, 148, 194, 581, 1550, 1618
BspFNI	CGCG	4 cut(s)	89, 565, 1545, 2173
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	6 cut(s)	94, 105, 134, 768, 1305, 2235
BspMAI	CTGCAG	3 cut(s)	142, 366, 1033
BspMI	ACCTGC	4 cut(s)	461, 513, 1528, 1697
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	3 cut(s)	1226, 1924, 2148
BspQI	GCTCTTC	1 cut(s)	174
BspT104I	TTCGAA	2 cut(s)	477, 750
BspT107I	GGYRCC	1 cut(s)	103
BspTI	CTTAAG	2 cut(s)	2146, 2435
BspTNI	GGTCTC	2 cut(s)	74, 1468
BsrBI	CCGCTC	1 cut(s)	1909
BsrDI	GCAATG	1 cut(s)	2166
BsrFI	RCCGGY	3 cut(s)	596, 832, 1064
BsrGI	TGTACA	1 cut(s)	2349
BsrI	ACTGG	4 cut(s)	63, 422, 518, 1382
BssAI	RCCGGY	3 cut(s)	596, 832, 1064
BssECI	CCNNGG	6 cut(s)	87, 1308, 1584, 1976, 2220, 2506
BssHII	GCGCGC	1 cut(s)	2171
BssMI	GATC	7 cut(s)	652, 1231, 1366, 1603, 1916, 2140, 2192
BssNAI	GTATAC	1 cut(s)	1174
BssNI	GRCGYC	1 cut(s)	1989
BssT1I	CCWWGG	2 cut(s)	1584, 2506
Bst1107I	GTATAC	1 cut(s)	1174
Bst2UI	CCWGG	2 cut(s)	950, 1706
Bst4CI	ACNGT	6 cut(s)	977, 1121, 1129, 1578, 1750, 2264
Bst6I	CTCTTC	4 cut(s)	174, 183, 629, 1445
BstACI	GRCGYC	1 cut(s)	1989
BstAFI	CTTAAG	2 cut(s)	2146, 2435
BstAPI	GCANNNNNTGC	1 cut(s)	1511
BstAUI	TGTACA	1 cut(s)	2349
BstBI	TTCGAA	2 cut(s)	477, 750
BstC8I	GCNNGC	6 cut(s)	591, 615, 1251, 2173, 2410, 2469
BstDSI	CCRYGG	2 cut(s)	87, 2506
BstEII	GGTNACC	1 cut(s)	1202
BstF5I	GGATG	8 cut(s)	319, 673, 958, 1318, 1639, 1735, 1900, 2410
BstFNI	CGCG	4 cut(s)	89, 565, 1545, 2173
BstHHI	GCGC	4 cut(s)	349, 862, 2173, 2175
BstKTI	GATC	7 cut(s)	655, 1234, 1369, 1606, 1919, 2143, 2195
BstMAI	GTCTC	6 cut(s)	74, 418, 1102, 1468, 1961, 2354
BstMBI	GATC	7 cut(s)	652, 1231, 1366, 1603, 1916, 2140, 2192
BstMWI	GCNNNNNNNGC	4 cut(s)	506, 838, 1511, 1520
BstNI	CCWGG	2 cut(s)	950, 1706
BstNSI	RCATGY	2 cut(s)	879, 2412
BstPAI	GACNNNNGTC	1 cut(s)	1881
BstPI	GGTNACC	1 cut(s)	1202
BstSCI	CCNGG	4 cut(s)	489, 948, 1704, 1975
BstSFI	CTRYAG	5 cut(s)	138, 362, 1029, 1117, 1749
BstSLI	GKGCMC	1 cut(s)	2308
BstUI	CGCG	4 cut(s)	89, 565, 1545, 2173
BstV2I	GAAGAC	2 cut(s)	12, 562
BstX2I	RGATCY	1 cut(s)	2192
BstYI	RGATCY	1 cut(s)	2192
BstZ17I	GTATAC	1 cut(s)	1174
Bsu36I	CCTNAGG	2 cut(s)	1353, 1529
BsuI	GTATCC	2 cut(s)	132, 1382
BsuRI	GGCC	6 cut(s)	95, 148, 194, 581, 1550, 1618
BtgI	CCRYGG	2 cut(s)	87, 2506
BtgZI	GCGATG	2 cut(s)	945, 1707
BtsCI	GGATG	8 cut(s)	319, 673, 958, 1318, 1639, 1735, 1900, 2410
BtsI	GCAGTG	1 cut(s)	1992
BtsIMutI	CAGTG	4 cut(s)	56, 1125, 1992, 2133
BveI	ACCTGC	4 cut(s)	461, 513, 1528, 1697
Cac8I	GCNNGC	6 cut(s)	591, 615, 1251, 2173, 2410, 2469
CaiI	CAGNNNCTG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	40
CfoI	GCGC	4 cut(s)	349, 862, 2173, 2175
Cfr10I	RCCGGY	3 cut(s)	596, 832, 1064
Cfr13I	GGNCC	5 cut(s)	93, 132, 193, 1616, 1808
Cfr42I	CCGCGG	1 cut(s)	90
CseI	GACGC	1 cut(s)	1070
Csp6I	GTAC	3 cut(s)	600, 2260, 2350
CspAI	ACCGGT	1 cut(s)	1064
CviQI	GTAC	3 cut(s)	600, 2260, 2350
DpnI	GATC	7 cut(s)	654, 1233, 1368, 1605, 1918, 2142, 2194
DpnII	GATC	7 cut(s)	652, 1231, 1366, 1603, 1916, 2140, 2192
DraIII	CACNNNGTG	1 cut(s)	2030
DrdI	GACNNNNNNGTC	1 cut(s)	1988
DseDI	GACNNNNNNGTC	1 cut(s)	1988
EaeI	YGGCCR	2 cut(s)	579, 1548
Eam1104I	CTCTTC	4 cut(s)	174, 183, 629, 1445
EarI	CTCTTC	4 cut(s)	174, 183, 629, 1445
EciI	GGCGGA	2 cut(s)	1549, 1929
Eco130I	CCWWGG	2 cut(s)	1584, 2506
Eco24I	GRGCYC	3 cut(s)	440, 1306, 1956
Eco31I	GGTCTC	2 cut(s)	74, 1468
Eco47I	GGWCC	2 cut(s)	132, 1808
Eco57I	CTGAAG	2 cut(s)	1257, 2385
Eco81I	CCTNAGG	2 cut(s)	1353, 1529
Eco88I	CYCGRG	1 cut(s)	1307
Eco91I	GGTNACC	1 cut(s)	1202
EcoO109I	RGGNCCY	3 cut(s)	93, 132, 193
EcoO65I	GGTNACC	1 cut(s)	1202
EcoRII	CCWGG	2 cut(s)	948, 1704
EcoT14I	CCWWGG	2 cut(s)	1584, 2506
EcoT22I	ATGCAT	1 cut(s)	2410
EcoT38I	GRGCYC	3 cut(s)	440, 1306, 1956
ErhI	CCWWGG	2 cut(s)	1584, 2506
FalI	AAGNNNNNCTT	6 cut(s)	180, 212, 367, 399, 2429, 2461
FaqI	GGGAC	5 cut(s)	769, 1084, 1954, 1994, 2201
FauI	CCCGC	3 cut(s)	82, 676, 1902
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	2 cut(s)	1173, 2442
FokI	GGATG	8 cut(s)	326, 680, 965, 1325, 1646, 1742, 1907, 2417
FriOI	GRGCYC	3 cut(s)	440, 1306, 1956
FspI	TGCGCA	1 cut(s)	861
GlaI	GCGC	4 cut(s)	348, 861, 2172, 2174
GsuI	CTGGAG	1 cut(s)	1365
HaeIII	GGCC	6 cut(s)	95, 148, 194, 581, 1550, 1618
HapII	CCGG	7 cut(s)	118, 490, 597, 833, 1065, 1257, 1976
HgaI	GACGC	1 cut(s)	1070
HhaI	GCGC	4 cut(s)	349, 862, 2173, 2175
Hin1I	GRCGYC	1 cut(s)	1989
Hin6I	GCGC	4 cut(s)	347, 860, 2171, 2173
HinP1I	GCGC	4 cut(s)	347, 860, 2171, 2173
HincII	GTYRAC	1 cut(s)	2443
HindII	GTYRAC	1 cut(s)	2443
HpaII	CCGG	7 cut(s)	118, 490, 597, 833, 1065, 1257, 1976
HphI	GGTGA	9 cut(s)	433, 526, 782, 810, 893, 1196, 1509, 1601, 1790
Hpy166II	GTNNAC	5 cut(s)	285, 980, 1174, 1574, 2443
Hpy188III	TCNNGA	9 cut(s)	41, 226, 328, 779, 1146, 1235, 1307, 1390, 2073
Hpy8I	GTNNAC	5 cut(s)	285, 980, 1174, 1574, 2443
Hpy99I	CGWCG	3 cut(s)	1582, 1631, 1991
HpyAV	CCTTC	9 cut(s)	278, 334, 671, 734, 746, 797, 1166, 1327, 1492
HpyCH4III	ACNGT	6 cut(s)	977, 1121, 1129, 1578, 1750, 2264
HpyCH4IV	ACGT	4 cut(s)	238, 555, 1570, 1989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	506, 838, 1511, 1520
HpySE526I	ACGT	4 cut(s)	238, 555, 1570, 1989
Hsp92I	GRCGYC	1 cut(s)	1989
HspAI	GCGC	4 cut(s)	347, 860, 2171, 2173
Ksp22I	TGATCA	1 cut(s)	652
KspI	CCGCGG	1 cut(s)	90
Kzo9I	GATC	7 cut(s)	652, 1231, 1366, 1603, 1916, 2140, 2192
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	4 cut(s)	203, 1309, 2059, 2239
LweI	GCATC	7 cut(s)	200, 951, 973, 1004, 1501, 2091, 2395
MaeII	ACGT	4 cut(s)	238, 555, 1570, 1989
MaeIII	GTNAC	6 cut(s)	413, 772, 809, 1202, 1990, 2414
MalI	GATC	7 cut(s)	654, 1233, 1368, 1605, 1918, 2142, 2194
MbiI	CCGCTC	1 cut(s)	1909
MboI	GATC	7 cut(s)	652, 1231, 1366, 1603, 1916, 2140, 2192
MflI	RGATCY	1 cut(s)	2192
MhlI	GDGCHC	4 cut(s)	440, 1306, 1956, 2308
MlsI	TGGCCA	2 cut(s)	581, 1550
MluCI	AATT	6 cut(s)	259, 935, 1822, 2246, 2321, 2394
MluNI	TGGCCA	2 cut(s)	581, 1550
MlyI	GAGTC	7 cut(s)	26, 231, 576, 695, 791, 1673, 1721
MmeI	TCCRAC	3 cut(s)	291, 1769, 1915
Mox20I	TGGCCA	2 cut(s)	581, 1550
Mph1103I	ATGCAT	1 cut(s)	2410
MscI	TGGCCA	2 cut(s)	581, 1550
MseI	TTAA	8 cut(s)	459, 927, 1152, 1407, 1491, 2147, 2393, 2436
MslI	CAYNNNNRTG	1 cut(s)	1130
Msp20I	TGGCCA	2 cut(s)	581, 1550
MspA1I	CMGCKG	2 cut(s)	89, 1253
MspCI	CTTAAG	2 cut(s)	2146, 2435
MspI	CCGG	7 cut(s)	118, 490, 597, 833, 1065, 1257, 1976
MspR9I	CCNGG	4 cut(s)	491, 950, 1706, 1977
MvaI	CCWGG	2 cut(s)	950, 1706
MvnI	CGCG	4 cut(s)	89, 565, 1545, 2173
MwoI	GCNNNNNNNGC	4 cut(s)	506, 838, 1511, 1520
NciI	CCSGG	2 cut(s)	491, 1977
NcoI	CCATGG	1 cut(s)	2506
NdeII	GATC	7 cut(s)	652, 1231, 1366, 1603, 1916, 2140, 2192
NheI	GCTAGC	1 cut(s)	589
NlaIV	GGNNCC	6 cut(s)	94, 105, 134, 768, 1305, 2235
NmuCI	GTSAC	3 cut(s)	1202, 1990, 2414
NsbI	TGCGCA	1 cut(s)	861
NsiI	ATGCAT	1 cut(s)	2410
NspI	RCATGY	2 cut(s)	879, 2412
NspV	TTCGAA	2 cut(s)	477, 750
PaeI	GCATGC	1 cut(s)	2412
PagI	TCATGA	1 cut(s)	40
PaqCI	CACCTGC	1 cut(s)	1528
PauI	GCGCGC	1 cut(s)	2171
PciSI	GCTCTTC	1 cut(s)	174
PfeI	GAWTC	7 cut(s)	299, 367, 389, 479, 747, 1790, 1865
PflMI	CCANNNNNTGG	1 cut(s)	2183
PinAI	ACCGGT	1 cut(s)	1064
PleI	GAGTC	7 cut(s)	25, 230, 575, 695, 790, 1672, 1720
PpsI	GAGTC	7 cut(s)	25, 230, 575, 695, 790, 1672, 1720
PpuMI	RGGWCCY	1 cut(s)	132
PshAI	GACNNNNGTC	1 cut(s)	1881
PsiI	TTATAA	1 cut(s)	1566
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	948, 1704
PspEI	GGTNACC	1 cut(s)	1202
PspGI	CCWGG	2 cut(s)	948, 1704
PspN4I	GGNNCC	6 cut(s)	94, 105, 134, 768, 1305, 2235
PspPI	GGNCC	5 cut(s)	93, 132, 193, 1616, 1808
PspPPI	RGGWCCY	1 cut(s)	132
PstI	CTGCAG	3 cut(s)	142, 366, 1033
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	2192
PteI	GCGCGC	1 cut(s)	2171
PvuII	CAGCTG	1 cut(s)	1253
RsaI	GTAC	3 cut(s)	601, 2261, 2351
RsaNI	GTAC	3 cut(s)	600, 2260, 2350
RseI	CAYNNNNRTG	1 cut(s)	1130
SacII	CCGCGG	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	2441
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	8 cut(s)	459, 927, 1152, 1407, 1491, 2147, 2393, 2436
Sau3AI	GATC	7 cut(s)	652, 1231, 1366, 1603, 1916, 2140, 2192
Sau96I	GGNCC	5 cut(s)	93, 132, 193, 1616, 1808
SbfI	CCTGCAGG	1 cut(s)	1033
SchI	GAGTC	7 cut(s)	26, 231, 576, 695, 791, 1673, 1721
ScrFI	CCNGG	4 cut(s)	491, 950, 1706, 1977
SdaI	CCTGCAGG	1 cut(s)	1033
SduI	GDGCHC	4 cut(s)	440, 1306, 1956, 2308
SfaNI	GCATC	7 cut(s)	200, 951, 973, 1004, 1501, 2091, 2395
SfcI	CTRYAG	5 cut(s)	138, 362, 1029, 1117, 1749
Sfr303I	CCGCGG	1 cut(s)	90
SfuI	TTCGAA	2 cut(s)	477, 750
SgrBI	CCGCGG	1 cut(s)	90
SinI	GGWCC	2 cut(s)	132, 1808
SmiMI	CAYNNNNRTG	1 cut(s)	1130
SmlI	CTYRAG	4 cut(s)	797, 1208, 2146, 2435
SmoI	CTYRAG	4 cut(s)	797, 1208, 2146, 2435
SpeI	ACTAGT	2 cut(s)	854, 1094
SphI	GCATGC	1 cut(s)	2412
Sse8387I	CCTGCAGG	1 cut(s)	1033
Sse9I	AATT	6 cut(s)	259, 935, 1822, 2246, 2321, 2394
SspI	AATATT	1 cut(s)	291
StyD4I	CCNGG	4 cut(s)	489, 948, 1704, 1975
StyI	CCWWGG	2 cut(s)	1584, 2506
TaaI	ACNGT	6 cut(s)	977, 1121, 1129, 1578, 1750, 2264
TaiI	ACGT	4 cut(s)	241, 558, 1573, 1992
TaqI	TCGA	7 cut(s)	440, 477, 750, 945, 1178, 1424, 2442
TasI	AATT	6 cut(s)	259, 935, 1822, 2246, 2321, 2394
TatI	WGTACW	1 cut(s)	2349
TauI	GCSGC	2 cut(s)	565, 1344
TfiI	GAWTC	7 cut(s)	299, 367, 389, 479, 747, 1790, 1865
Tru1I	TTAA	8 cut(s)	459, 927, 1152, 1407, 1491, 2147, 2393, 2436
Tru9I	TTAA	8 cut(s)	459, 927, 1152, 1407, 1491, 2147, 2393, 2436
TscAI	CASTG	4 cut(s)	63, 1132, 1999, 2140
TseFI	GTSAC	3 cut(s)	1202, 1990, 2414
Tsp45I	GTSAC	3 cut(s)	1202, 1990, 2414
TspDTI	ATGAA	8 cut(s)	29, 192, 231, 517, 1571, 2025, 2187, 2437
TspGWI	ACGGA	2 cut(s)	395, 462
TspRI	CASTG	4 cut(s)	63, 1132, 1999, 2140
Van91I	CCANNNNNTGG	1 cut(s)	2183
Vha464I	CTTAAG	2 cut(s)	2146, 2435
VpaK11BI	GGWCC	2 cut(s)	132, 1808
XapI	RAATTY	2 cut(s)	259, 2246
XbaI	TCTAGA	1 cut(s)	1145
XceI	RCATGY	2 cut(s)	879, 2412
XmiI	GTMKAC	2 cut(s)	1173, 2442
ZraI	GACGTC	1 cut(s)	1990
Zsp2I	ATGCAT	1 cut(s)	2410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.