Rmu_sc0005584.1_g000020

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005584.1
OG0000153
Physical Location & Seq
Forward (+)
63269 .. 63838
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005584.1_g000020.1.cds

Sequence Viewer

Length: 570 bp
atgttagataacatgaataatttcatctggcagccctatctccagtcttctgagtttgagactttttcgttttctggtaaagaagagcagtgtactacagctctaggtcgggttgaactgtacataactgtttgcccaaacttcattccgtctatcagtgaggataaggaagacttggatatcttccctgttgtttattctcctgacagagtgatgcggcaatttggctgccttcaggacgttccctcacctccacctcgctctcttaactctaagatcacaagcttttctcatatggagcgtagatgcgtacttgacttttctggcagcattgcggacttcccatctcagctgccagggaatgccgcgaatgctaacgcctcccctgcttatagttgttattggaagggagtgttgtgcaggttcaggctttttgtggaagccggtggtcctcagctacagttgggacctattaccagcagcagattggctagccacaaggccgtactgacttatgccgaaaagcataaccttactttatgcatacgacccaacacggagtcaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

189

Amino Acids

21.17

Weight (kDa)

5.61

Isoelectric Point (pI)

60.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AccII CGCG 1 cut(s) 368
AciI CCGC 3 cut(s) 217, 335, 366
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 4 cut(s) 94, 122, 312, 507
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 4 cut(s) 101, 285, 352, 457
AluI AGCT 4 cut(s) 101, 285, 352, 457
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 5 cut(s) 31, 228, 327, 352, 480
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 449, 467
AsuHPI GGTGA 1 cut(s) 240
AsuNHI GCTAGC 1 cut(s) 491
AvaII GGWCC 2 cut(s) 449, 467
BbsI GAAGAC 2 cut(s) 39, 177
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 5 cut(s) 43, 215, 339, 339, 492
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 104, 492
BfmI CTRYAG 2 cut(s) 96, 458
BfuAI ACCTGC 1 cut(s) 411
BisI GCNGC 7 cut(s) 32, 218, 229, 328, 353, 366, 481
BlsI GCNGC 7 cut(s) 33, 219, 230, 329, 354, 367, 482
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 2 cut(s) 449, 467
BmgT120I GGNCC 2 cut(s) 449, 467
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 204, 296
BmtI GCTAGC 1 cut(s) 495
BpiI GAAGAC 2 cut(s) 39, 177
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 3 cut(s) 42, 362, 467
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 5 cut(s) 43, 215, 339, 339, 492
BsgI GTGCAG 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 503
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 480
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 2 cut(s) 367, 376
BsnI GGCC 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 3 cut(s) 217, 335, 366
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 3 cut(s) 43, 361, 466
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 411
BspOI GCTAGC 1 cut(s) 495
BspQI GCTCTTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 443
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 120, 130, 462
Bst6I CTCTTC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 4 cut(s) 51, 273, 348, 453
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 371, 386
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 2 cut(s) 96, 458
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 5 cut(s) 43, 215, 339, 339, 492
BstV2I GAAGAC 2 cut(s) 39, 177
BsuRI GGCC 1 cut(s) 503
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 95, 163
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 449, 467
Csp6I GTAC 4 cut(s) 93, 121, 311, 506
CviAII CATG 1 cut(s) 13
CviQI GTAC 4 cut(s) 93, 121, 311, 506
DdeI CTNAG 4 cut(s) 51, 273, 348, 453
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 449, 467
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 355
EcoRV GATATC 1 cut(s) 181
EcoT22I ATGCAT 1 cut(s) 545
FaeI CATG 1 cut(s) 16
FaiI YATR 9 cut(s) 14, 125, 294, 296, 393, 516, 528, 541, 545
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 1 cut(s) 480
FatI CATG 1 cut(s) 12
FauNDI CATATG 1 cut(s) 294
Fnu4HI GCNGC 7 cut(s) 32, 218, 229, 328, 353, 366, 481
Fsp4HI GCNGC 7 cut(s) 32, 218, 229, 328, 353, 366, 481
FspBI CTAG 2 cut(s) 104, 492
GluI GCNGC 7 cut(s) 32, 218, 229, 328, 353, 366, 481
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 1 cut(s) 503
HapII CCGG 1 cut(s) 444
Hin1II CATG 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 1 cut(s) 560
HpaII CCGG 1 cut(s) 444
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 203, 236
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 242, 400
HpyCH4III ACNGT 3 cut(s) 120, 130, 462
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 420, 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 386
HpyF3I CTNAG 4 cut(s) 51, 273, 348, 453
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 5 cut(s) 43, 215, 339, 339, 492
LweI GCATC 2 cut(s) 204, 296
MaeI CTAG 2 cut(s) 104, 492
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 4 cut(s) 39, 95, 175, 182
MluCI AATT 2 cut(s) 19, 221
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 6 cut(s) 154, 256, 261, 267, 391, 462
Mph1103I ATGCAT 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 357
Mva1269I GAATGC 2 cut(s) 367, 376
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 371, 386
NdeI CATATG 1 cut(s) 294
NdeII GATC 1 cut(s) 276
NheI GCTAGC 1 cut(s) 491
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 468
NsiI ATGCAT 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 78
PctI GAATGC 2 cut(s) 367, 376
PdmI GAANNNNTTC 1 cut(s) 20
PkrI GCNGC 7 cut(s) 33, 219, 230, 329, 354, 367, 482
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PpuMI RGGWCCY 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 2 cut(s) 449, 467
PspPPI RGGWCCY 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 4 cut(s) 94, 122, 312, 507
RsaNI GTAC 4 cut(s) 93, 121, 311, 506
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 7 cut(s) 32, 218, 229, 328, 353, 366, 481
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 2 cut(s) 449, 467
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 1 cut(s) 357
SfaNI GCATC 2 cut(s) 204, 296
SfcI CTRYAG 2 cut(s) 96, 458
SinI GGWCC 2 cut(s) 449, 467
Sse9I AATT 2 cut(s) 19, 221
SsiI CCGC 3 cut(s) 217, 335, 366
SspMI CTAG 2 cut(s) 104, 492
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 120, 130, 462
TaiI ACGT 1 cut(s) 243
TasI AATT 2 cut(s) 19, 221
TatI WGTACW 2 cut(s) 92, 120
TauI GCSGC 2 cut(s) 220, 368
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 2 cut(s) 95, 163
TseI GCWGC 5 cut(s) 31, 228, 327, 352, 480
TspDTI ATGAA 3 cut(s) 13, 29, 133
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 2 cut(s) 95, 163
VpaK11BI GGWCC 2 cut(s) 449, 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 2 cut(s) 104, 492
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.