Rmu_sc0001339.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001339.1
OG0000153
Physical Location & Seq
Forward (+)
19537 .. 20286
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001339.1_g000005.1.cds

Sequence Viewer

Length: 687 bp
atgctctcagatagtctcgggaagaaggactgtgttggctcccctacatcaacgttcttgaggttttgggagttgcagcggtgcgagttcaggaggtttattcagactggtgggactaggttgtgtccgaaagccaatagtgagaacaagagactacttcgcagtagcactgtcatgggtgtcatgtctagacttaaccttccatatactgaggtatactcgaatggcatagaacgtgtggttggtcatcttaaaggcaaagtcaggccttccgagaatagagaagaaagtaaaaagaaggtttgccgcttcaaacctaaggtggcaaaggatcgcatccctcttccagtagtcaaaagtacctttggtgttagagtgatactgccgtcgagtttagctgatggaaaatggaagaaaaggaaagccgcttcttactcaagacttagtggagctactaagaaaaaggttacagttgatgcctcacctgctgtccgcaggcggagctctcgcattgctaacatgagtttttctaaacctataccgtcgtctaagggcgctactcatgttgatcttagtgacactccaagtgacaacatcgaaggtagcccccttagtgataatgtcagtacacatgaggagaatgaatctgatacttatgagggagagacctgtgatgacagtagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.3

Weight (kDa)

9.83

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 493
Acc36I ACCTGC 1 cut(s) 493
AccI GTMKAC 1 cut(s) 216
AciI CCGC 5 cut(s) 79, 307, 426, 493, 499
AclI AACGTT 1 cut(s) 53
AclWI GGATC 1 cut(s) 339
AfaI GTAC 2 cut(s) 361, 628
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 3 cut(s) 398, 452, 504
AluI AGCT 3 cut(s) 398, 452, 504
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 3 cut(s) 20, 145, 659
AlwI GGATC 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 76
AspLEI GCGC 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 474
AvaI CYCGRG 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 318
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BanII GRGCYC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 370
BcoDI GTCTC 3 cut(s) 20, 145, 659
BfaI CTAG 2 cut(s) 117, 189
BfoI RGCGCY 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 3 cut(s) 77, 307, 426
BlsI GCNGC 3 cut(s) 78, 308, 427
BmeT110I CYCGRG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 40
BmsI GCATC 2 cut(s) 345, 466
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpuEI CTTGAG 2 cut(s) 79, 421
BsaI GGTCTC 1 cut(s) 659
Bse1I ACTGG 2 cut(s) 112, 347
Bse21I CCTNAGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 510
BseGI GGATG 1 cut(s) 336
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 2 cut(s) 21, 201
BseNI ACTGG 2 cut(s) 112, 347
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 506
BsiHKCI CYCGRG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 127
BsmAI GTCTC 3 cut(s) 20, 145, 659
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 659
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 2 cut(s) 331, 568
BspACI CCGC 5 cut(s) 79, 307, 426, 493, 499
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 2 cut(s) 20, 202
BspLI GGNNCC 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 1 cut(s) 339
BspTNI GGTCTC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 510
BsrI ACTGG 2 cut(s) 112, 347
BssMI GATC 2 cut(s) 331, 568
BssNAI GTATAC 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 217
Bst4CI ACNGT 5 cut(s) 32, 172, 472, 543, 680
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 8 cut(s) 7, 210, 318, 443, 456, 549, 572, 611
BstF5I GGATG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 2 cut(s) 334, 571
BstMAI GTCTC 3 cut(s) 20, 145, 659
BstMBI GATC 2 cut(s) 331, 568
BstMWI GCNNNNNNNGC 2 cut(s) 485, 501
BstV1I GCAGC 1 cut(s) 88
BstZ17I GTATAC 1 cut(s) 217
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 497
CfoI GCGC 1 cut(s) 557
Csp6I GTAC 2 cut(s) 360, 627
CviAII CATG 5 cut(s) 175, 184, 520, 563, 632
CviJI RGCY 8 cut(s) 39, 134, 268, 398, 425, 452, 504, 606
CviKI_1 RGCY 8 cut(s) 39, 134, 268, 398, 425, 452, 504, 606
CviQI GTAC 2 cut(s) 360, 627
DdeI CTNAG 8 cut(s) 7, 210, 318, 443, 456, 549, 572, 611
DpnI GATC 2 cut(s) 333, 570
DpnII GATC 2 cut(s) 331, 568
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 504
Eco147I AGGCCT 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 506
Eco31I GGTCTC 1 cut(s) 659
Eco53kI GAGCTC 1 cut(s) 504
Eco81I CCTNAGG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 506
FaeI CATG 5 cut(s) 178, 187, 523, 566, 635
FaqI GGGAC 1 cut(s) 127
FatI CATG 5 cut(s) 174, 183, 519, 562, 631
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 77, 307, 426
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 3 cut(s) 77, 307, 426
FspBI CTAG 2 cut(s) 117, 189
GlaI GCGC 1 cut(s) 556
GluI GCNGC 3 cut(s) 77, 307, 426
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 1 cut(s) 268
HhaI GCGC 1 cut(s) 557
Hin1II CATG 5 cut(s) 178, 187, 523, 566, 635
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HinfI GANTC 1 cut(s) 644
HphI GGTGA 1 cut(s) 474
Hpy166II GTNNAC 2 cut(s) 217, 629
Hpy188I TCNGA 5 cut(s) 10, 105, 129, 274, 649
Hpy188III TCNNGA 5 cut(s) 19, 58, 91, 189, 438
Hpy8I GTNNAC 2 cut(s) 217, 629
Hpy99I CGWCG 2 cut(s) 391, 547
HpyAV CCTTC 5 cut(s) 19, 209, 279, 292, 593
HpyCH4III ACNGT 5 cut(s) 32, 172, 472, 543, 680
HpyCH4IV ACGT 2 cut(s) 53, 235
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 501
HpyF3I CTNAG 8 cut(s) 7, 210, 318, 443, 456, 549, 572, 611
HpySE526I ACGT 2 cut(s) 53, 235
Hsp92II CATG 5 cut(s) 178, 187, 523, 566, 635
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 2 cut(s) 331, 568
LmnI GCTCC 3 cut(s) 44, 449, 501
LpnPI CCDG 7 cut(s) 76, 93, 250, 360, 481, 498, 682
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 2 cut(s) 345, 466
MaeI CTAG 2 cut(s) 117, 189
MaeII ACGT 2 cut(s) 53, 235
MaeIII GTNAC 3 cut(s) 466, 575, 587
MalI GATC 2 cut(s) 333, 570
MboI GATC 2 cut(s) 331, 568
MboII GAAGA 4 cut(s) 34, 296, 335, 424
MhlI GDGCHC 1 cut(s) 506
MnlI CCTC 7 cut(s) 54, 87, 205, 351, 490, 628, 652
MseI TTAA 2 cut(s) 195, 252
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 485, 501
NdeII GATC 2 cut(s) 331, 568
NlaIII CATG 5 cut(s) 178, 187, 523, 566, 635
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 575, 587
PaqCI CACCTGC 1 cut(s) 493
PceI AGGCCT 1 cut(s) 268
PfeI GAWTC 1 cut(s) 644
PkrI GCNGC 3 cut(s) 78, 308, 427
Psp124BI GAGCTC 1 cut(s) 506
Psp1406I AACGTT 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 40
RsaI GTAC 2 cut(s) 361, 628
RsaNI GTAC 2 cut(s) 360, 627
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 506
SaqAI TTAA 2 cut(s) 195, 252
SatI GCNGC 3 cut(s) 77, 307, 426
Sau3AI GATC 2 cut(s) 331, 568
SduI GDGCHC 1 cut(s) 506
SfaNI GCATC 2 cut(s) 345, 466
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 58, 436
SmoI CTYRAG 2 cut(s) 58, 436
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 5 cut(s) 79, 307, 426, 493, 499
SspMI CTAG 2 cut(s) 117, 189
SstI GAGCTC 1 cut(s) 506
StuI AGGCCT 1 cut(s) 268
TaaI ACNGT 5 cut(s) 32, 172, 472, 543, 680
TaiI ACGT 2 cut(s) 56, 238
TaqI TCGA 3 cut(s) 221, 389, 597
TatI WGTACW 1 cut(s) 626
TauI GCSGC 2 cut(s) 309, 428
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 2 cut(s) 195, 252
Tru9I TTAA 2 cut(s) 195, 252
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 575, 587
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 2 cut(s) 575, 587
TspDTI ATGAA 1 cut(s) 657
TspRI CASTG 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 2 cut(s) 117, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.