FvH4_4g14564

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000153
Physical Location & Seq
Forward (+)
18251102 .. 18252539
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14564.t1

Sequence Viewer

Length: 687 bp
ATGGCCCCTAAAGTGTTGAGTCTGATAGATCACCATTTTGTGGTTAATGATGGTCTGAAGGGTCCCTTCATAGATGTTGATGAGACTTCTGGAGACGTTAGCCTTGAGCGCATCTCCAGGTTATTAATTGAGAGGGGAGACTTCCCAGCAGTCCCCATAGATTTTGCTTATCCTTGCGGTGCTGTAACAGGGTGGTCGCAGTGGGTTGATTATGAGTTAAGGGTTGAAGTTGTAAGAGAAAGACTATCACGAGCTGGGGTCTTGTCTGTCGTATTTATTTCTTCTCGTTGCGATATTAACAGGGATGTTGAGACTCTTAATCACGTGGATGGTGTGTTAATGCCAGGCGAAGGTTTCGACTCGGGTTGCCGTTTGGCAGCCATGCTTGCTCTTTGGTTAACAAAGTATGTTTCCATTGAATTCTTTTATGAGTTTGTCAAGCAGCGTGTGTATCCCCTGGCGGTTGCCATAGCGACAATTCATAGGGTTATGAGGCAGCTCAGTTGTTCTCAAGAGATTCCCGTGCATCCCCCTTTATCCATTAGAGCTGTCGGGAAGGCTAGGAAGCTTTCACCTAGAGAAGTTGATTGTATTGATGATTTCTCTGGCAGACTTGCAGACATACCATCACAGCTACTTGGAGACATTTTGCATCCTAACGCTTCTCCTGACTACAGTCGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

229

Amino Acids

25.52

Weight (kDa)

5.51

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AciI CCGC 2 cut(s) 177, 461
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 77
AcvI CACGTG 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 40, 350
AgsI TTSAA 2 cut(s) 227, 419
AjnI CCWGG 3 cut(s) 116, 343, 456
AluBI AGCT 5 cut(s) 254, 499, 548, 568, 634
AluI AGCT 5 cut(s) 254, 499, 548, 568, 634
Alw26I GTCTC 5 cut(s) 77, 87, 132, 305, 636
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 377, 442, 496
ApoI RAATTY 1 cut(s) 419
AseI ATTAAT 1 cut(s) 125
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 4, 62
AsuHPI GGTGA 2 cut(s) 23, 564
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 62
BauI CACGAG 1 cut(s) 249
BbrPI CACGTG 1 cut(s) 325
BbvI GCAGC 3 cut(s) 389, 454, 508
BccI CCATC 3 cut(s) 44, 323, 634
BceAI ACGGC 1 cut(s) 354
BciT130I CCWGG 3 cut(s) 118, 345, 458
BciVI GTATCC 1 cut(s) 462
BcoDI GTCTC 5 cut(s) 77, 87, 132, 305, 636
BfaI CTAG 3 cut(s) 561, 576, 685
BfmI CTRYAG 1 cut(s) 673
BfuI GTATCC 1 cut(s) 462
BisI GCNGC 3 cut(s) 378, 443, 497
BlsI GCNGC 3 cut(s) 379, 444, 498
Bme1390I CCNGG 3 cut(s) 118, 345, 458
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 4, 62
BmiI GGNNCC 3 cut(s) 6, 63, 64
BmrFI CCNGG 3 cut(s) 118, 345, 458
BmsI GCATC 3 cut(s) 120, 535, 661
BoxI GACNNNNGTC 1 cut(s) 675
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 2 cut(s) 100, 111
BpuEI CTTGAG 2 cut(s) 125, 495
BsaAI YACGTR 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 456
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 350
BseBI CCWGG 3 cut(s) 118, 345, 458
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 4 cut(s) 310, 334, 526, 652
BseLI CCNNNNNNNGG 2 cut(s) 40, 350
BseMII CTCAG 1 cut(s) 514
BseXI GCAGC 3 cut(s) 389, 454, 508
BseYI CCCAGC 2 cut(s) 145, 254
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 361
BslFI GGGAC 2 cut(s) 48, 137
BslI CCNNNNNNNGG 2 cut(s) 40, 350
BsmAI GTCTC 5 cut(s) 77, 87, 132, 305, 636
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 2 cut(s) 48, 137
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 361
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 2 cut(s) 177, 461
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 513
BspLI GGNNCC 3 cut(s) 6, 63, 64
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 1 cut(s) 28
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 3 cut(s) 118, 345, 458
Bst4CI ACNGT 1 cut(s) 677
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 500
BstF5I GGATG 4 cut(s) 310, 334, 526, 652
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 5 cut(s) 77, 87, 132, 305, 636
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 108, 386
BstNI CCWGG 3 cut(s) 118, 345, 458
BstPAI GACNNNNGTC 1 cut(s) 675
BstSCI CCNGG 3 cut(s) 116, 343, 456
BstSFI CTRYAG 1 cut(s) 673
BstV1I GCAGC 3 cut(s) 389, 454, 508
BsuI GTATCC 1 cut(s) 462
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 310, 334, 526, 652
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 387
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 4, 62
CviAII CATG 1 cut(s) 382
CviJI RGCY 9 cut(s) 5, 102, 254, 380, 499, 548, 560, 568, 634
CviKI_1 RGCY 9 cut(s) 5, 102, 254, 380, 499, 548, 560, 568, 634
DdeI CTNAG 1 cut(s) 500
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 325
Eco88I CYCGRG 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 419
EcoRII CCWGG 3 cut(s) 116, 343, 456
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 1 cut(s) 385
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 2 cut(s) 48, 137
FatI CATG 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 378, 443, 497
FokI GGATG 4 cut(s) 317, 341, 513, 639
Fsp4HI GCNGC 3 cut(s) 378, 443, 497
FspBI CTAG 3 cut(s) 561, 576, 685
GlaI GCGC 1 cut(s) 110
GluI GCNGC 3 cut(s) 378, 443, 497
GsaI CCCAGC 2 cut(s) 149, 258
GsuI CTGGAG 2 cut(s) 100, 111
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 111
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 4 cut(s) 19, 313, 359, 517
HpaI GTTAAC 1 cut(s) 399
HphI GGTGA 2 cut(s) 23, 564
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 2 cut(s) 24, 57
Hpy188III TCNNGA 5 cut(s) 90, 249, 512, 553, 668
Hpy8I GTNNAC 1 cut(s) 399
HpyAV CCTTC 4 cut(s) 52, 76, 344, 550
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4IV ACGT 2 cut(s) 96, 324
HpyCH4V TGCA 3 cut(s) 526, 617, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 386
HpyF3I CTNAG 1 cut(s) 500
HpySE526I ACGT 2 cut(s) 96, 324
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 1 cut(s) 109
KflI GGGWCCC 1 cut(s) 62
KspAI GTTAAC 1 cut(s) 399
Kzo9I GATC 1 cut(s) 28
Lsp1109I GCAGC 3 cut(s) 389, 454, 508
LweI GCATC 3 cut(s) 120, 535, 661
MaeI CTAG 3 cut(s) 561, 576, 685
MaeII ACGT 2 cut(s) 96, 324
MaeIII GTNAC 2 cut(s) 184, 680
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 273
MluCI AATT 3 cut(s) 126, 419, 477
MlyI GAGTC 3 cut(s) 28, 307, 353
MnlI CCTC 2 cut(s) 126, 486
MseI TTAA 7 cut(s) 45, 125, 218, 297, 318, 338, 398
MslI CAYNNNNRTG 1 cut(s) 327
MspR9I CCNGG 3 cut(s) 118, 345, 458
MvaI CCWGG 3 cut(s) 118, 345, 458
MwoI GCNNNNNNNGC 2 cut(s) 108, 386
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 3 cut(s) 6, 63, 64
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 3 cut(s) 379, 444, 498
PleI GAGTC 3 cut(s) 27, 307, 353
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
PpsI GAGTC 3 cut(s) 27, 307, 353
Ppu21I YACGTR 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 62
PshAI GACNNNNGTC 1 cut(s) 675
PshBI ATTAAT 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 116, 343, 456
PspCI CACGTG 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 145, 254
PspGI CCWGG 3 cut(s) 116, 343, 456
PspN4I GGNNCC 3 cut(s) 6, 63, 64
PspPI GGNCC 2 cut(s) 4, 62
PspPPI RGGWCCY 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 7 cut(s) 45, 125, 218, 297, 318, 338, 398
SatI GCNGC 3 cut(s) 378, 443, 497
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 2 cut(s) 4, 62
SchI GAGTC 3 cut(s) 28, 307, 353
ScrFI CCNGG 3 cut(s) 118, 345, 458
SfaNI GCATC 3 cut(s) 120, 535, 661
SfcI CTRYAG 1 cut(s) 673
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 104, 510
SmoI CTYRAG 2 cut(s) 104, 510
Sse9I AATT 3 cut(s) 126, 419, 477
SsiI CCGC 2 cut(s) 177, 461
SspMI CTAG 3 cut(s) 561, 576, 685
StyD4I CCNGG 3 cut(s) 116, 343, 456
TaaI ACNGT 1 cut(s) 677
TaiI ACGT 2 cut(s) 99, 327
TaqI TCGA 1 cut(s) 357
TasI AATT 3 cut(s) 126, 419, 477
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 7 cut(s) 45, 125, 218, 297, 318, 338, 398
Tru9I TTAA 7 cut(s) 45, 125, 218, 297, 318, 338, 398
TscAI CASTG 1 cut(s) 206
TseI GCWGC 3 cut(s) 377, 442, 496
TspDTI ATGAA 2 cut(s) 58, 470
TspRI CASTG 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 62
VspI ATTAAT 1 cut(s) 125
XapI RAATTY 1 cut(s) 419
XspI CTAG 3 cut(s) 561, 576, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.