RchiOBHm_Chr2g0144471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000153
Physical Location & Seq
Forward (+)
62071139 .. 62071830
692 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51441

Sequence Viewer

Length: 609 bp
ATGGACAACTTTATGATTCGATTTGCTTCTAAAGAGGAGTCTGCTCTAGGCATGGCTGATGTTGCACCAGTATTGAGCGGAGACACCGCTGTTTTTGCGGGTATGAAAATTCCTTCAGAGTTAGCGGGTCCCTTGGCTAAATTTGCTGAGAGATATAGTGGTGGAGATATCTTTAGCTTAATTGATCGAGACTATACTTCAAGGAAGAAGTGCGAGTTGGTTAAAGAACTTGGCATGATGTTGTACAGCATGGAAGTTTGCCCGATAAAAGATGGAGAAATGTTTCTTATTTGGAGAGATGCTTGTCGTGATTTCATGGGGGCAGGTCTTAATGTTGGCTTCCTGCTGGATTCCTTAAAACAAGGTGCAAAGCACTTCTTTGGTTATATGATGAGGTCTGAAGGATCAGAGAATCAGTATGTTAAAATTCGTGGTCTGCAGGAGATGGTTTCACAAACCAAGAAGGAGCTTGCACGTCTTGAGGGAGAGTTGCGCAAGGCTGAAGATGATCTGAGTTTCAGTTTGCGTGACGTTCCTGTGCCTGCTATGGAGTGTGTACTAGAATCTTCTTGGAAGGATGACGGTCACTTCTCTCATTATCTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.78

Weight (kDa)

5.1

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 78
AciI CCGC 4 cut(s) 78, 87, 98, 125
AclWI GGATC 1 cut(s) 412
AcsI RAATTY 3 cut(s) 108, 140, 426
AcuI CTGAAG 3 cut(s) 99, 420, 522
AfaI GTAC 2 cut(s) 245, 558
AgsI TTSAA 1 cut(s) 201
AjiI CACGTC 1 cut(s) 476
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 2 cut(s) 177, 469
AluI AGCT 2 cut(s) 177, 469
Alw26I GTCTC 2 cut(s) 75, 183
AlwI GGATC 1 cut(s) 412
ApoI RAATTY 3 cut(s) 108, 140, 426
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 128
AvaII GGWCC 1 cut(s) 128
BccI CCATC 2 cut(s) 266, 439
BcoDI GTCTC 2 cut(s) 75, 183
BfaI CTAG 2 cut(s) 47, 560
BfmI CTRYAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 129, 130
BmsI GCATC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 138, 503
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 75, 183
BsmFI GGGAC 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 184, 404, 508
BspACI CCGC 4 cut(s) 78, 87, 98, 125
BspCNI CTCAG 2 cut(s) 139, 504
BspLI GGNNCC 2 cut(s) 129, 130
BspMAI CTGCAG 1 cut(s) 441
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 78
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 184, 404, 508
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 471, 543
BstDEI CTNAG 2 cut(s) 147, 512
BstF5I GGATG 1 cut(s) 583
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 3 cut(s) 187, 407, 511
BstMAI GTCTC 2 cut(s) 75, 183
BstMBI GATC 3 cut(s) 184, 404, 508
BstMWI GCNNNNNNNGC 3 cut(s) 62, 95, 143
BstSFI CTRYAG 1 cut(s) 437
BtrI CACGTC 1 cut(s) 476
BtsCI GGATG 1 cut(s) 583
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 471, 543
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 244, 557
CviAII CATG 4 cut(s) 52, 235, 250, 316
CviJI RGCY 6 cut(s) 56, 137, 177, 339, 469, 500
CviKI_1 RGCY 6 cut(s) 56, 137, 177, 339, 469, 500
CviQI GTAC 2 cut(s) 244, 557
DdeI CTNAG 2 cut(s) 147, 512
DpnI GATC 3 cut(s) 186, 406, 510
DpnII GATC 3 cut(s) 184, 404, 508
Eco130I CCWWGG 1 cut(s) 132
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 3 cut(s) 99, 420, 522
EcoO109I RGGNCCY 1 cut(s) 128
EcoRV GATATC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 4 cut(s) 55, 238, 253, 319
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 114
FatI CATG 4 cut(s) 51, 234, 249, 315
FauI CCCGC 2 cut(s) 91, 118
FokI GGATG 1 cut(s) 590
FspBI CTAG 2 cut(s) 47, 560
FspI TGCGCA 1 cut(s) 494
GlaI GCGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 495
Hin1II CATG 4 cut(s) 55, 238, 253, 319
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HinfI GANTC 5 cut(s) 16, 38, 350, 412, 563
Hpy166II GTNNAC 1 cut(s) 557
Hpy188I TCNGA 4 cut(s) 118, 400, 409, 513
Hpy188III TCNNGA 3 cut(s) 188, 308, 479
Hpy8I GTNNAC 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 123, 395, 457, 568
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 2 cut(s) 475, 531
HpyCH4V TGCA 4 cut(s) 65, 368, 439, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 95, 143
HpyF3I CTNAG 2 cut(s) 147, 512
HpySE526I ACGT 2 cut(s) 475, 531
Hsp92II CATG 4 cut(s) 55, 238, 253, 319
HspAI GCGC 1 cut(s) 493
KflI GGGWCCC 1 cut(s) 128
Kzo9I GATC 3 cut(s) 184, 404, 508
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 7 cut(s) 81, 309, 332, 356, 425, 549, 555
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 47, 560
MaeII ACGT 2 cut(s) 475, 531
MaeIII GTNAC 2 cut(s) 527, 584
MalI GATC 3 cut(s) 186, 406, 510
MbiI CCGCTC 1 cut(s) 78
MboI GATC 3 cut(s) 184, 404, 508
MboII GAAGA 3 cut(s) 217, 515, 558
MluCI AATT 4 cut(s) 108, 140, 180, 426
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 3 cut(s) 28, 387, 475
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 5 cut(s) 179, 222, 330, 356, 423
MspA1I CMGCKG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 62, 95, 143
NdeII GATC 3 cut(s) 184, 404, 508
NlaIII CATG 4 cut(s) 55, 238, 253, 319
NlaIV GGNNCC 2 cut(s) 129, 130
NmuCI GTSAC 2 cut(s) 527, 584
NsbI TGCGCA 1 cut(s) 494
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 4 cut(s) 16, 350, 412, 563
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 129, 130
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PstI CTGCAG 1 cut(s) 441
RsaI GTAC 2 cut(s) 245, 558
RsaNI GTAC 2 cut(s) 244, 557
SaqAI TTAA 5 cut(s) 179, 222, 330, 356, 423
Sau3AI GATC 3 cut(s) 184, 404, 508
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 47
SetI ASST 7 cut(s) 179, 328, 367, 398, 471, 478, 534
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 437
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 4 cut(s) 108, 140, 180, 426
SsiI CCGC 4 cut(s) 78, 87, 98, 125
SspMI CTAG 2 cut(s) 47, 560
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 2 cut(s) 478, 534
TaqI TCGA 2 cut(s) 19, 187
TasI AATT 4 cut(s) 108, 140, 180, 426
TatI WGTACW 2 cut(s) 243, 556
TfiI GAWTC 4 cut(s) 16, 350, 412, 563
Tru1I TTAA 5 cut(s) 179, 222, 330, 356, 423
Tru9I TTAA 5 cut(s) 179, 222, 330, 356, 423
TseFI GTSAC 2 cut(s) 527, 584
Tsp45I GTSAC 2 cut(s) 527, 584
TspDTI ATGAA 2 cut(s) 119, 304
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 3 cut(s) 108, 140, 426
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 2 cut(s) 47, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.