Rh7DG284800

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000153
Physical Location & Seq
Reverse (-)
31368493 .. 31382412
13920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG284800.1

Sequence Viewer

Length: 1596 bp
ATGGCACAAACATCTGAGTCTTCTCAGCCTACAGAACTTCATGACCACCATTTCTCATTGGAAGATGGTCTCATTCCTGCTTCCACCGCAGGGGCCTGTGAGGGTAGCCCAGAGGAGGCATCTCATGAGTTTTCTGGGTGCTTTGTCTCTCCCAAGTTCATATCCAGATGGTTCAGAAGGAAGGCCAAGAAGGGTGCATTTAGGCCTGTTGTTTTGGACGACATTGGGAAATTCAATTTCAGACCATATTTCGCTGCTCATGGCTTCCAGACATTTCCTTTCTTTTACCCAGAGGGTAACTCATCACCGTTCCTAGAGCCGGTTGAGCTGCTTCTAACCACTAGTGCGCAGTCCATAATAGCATGTGGTGACTTCTTTGACCCCGTGATGGAGAAGTACTCTCCTCATAGAGTTAAGAGGCAATTTGGCATCGACCAGGATGTGCCATCGCATCTATCCTATGGTGGACATCTTGGGGATTGCATCATGGGTTTCACTCGGACAGATGGTATTTCCTGCAGGGGTATGCTCTCTGATAGTCTCGGGAAGAAAGGCTGTGTTGGATCCCCTACATCAACATTCTTGAGGTTTTGGGAGTTGCAGCGGTGCGAGTTTAGGAGGTTTATTCAAACTGGTGGGACTAGGTTGCGTCTGAAAGCCACTAGTGAGAACAAGAGACTACTCCACAGTAGCACTATCATGGGTGTCATGTCTAGACTTAACCTTCCCTATACTGAGGTATACTCGAATGGTATGAAGCGTGTGGTTGGTCACCTTAAGGGTGGTAAAAGTGGAGATGATCCTGAAGTAGAGTTGCCAGCTGCCGGAGTGGGGAAAGGTAGCAAGAGCACTACAAAGGGTAAAGTCAGGGCTTCCGAGGATGGAGGGGAAGGCAGAAAGAAGGTTTGCCGCTTCAAACCTAAGGTAGCCAGAGATCGTATCCCCCCTCCAGTAGCCAAGAGTGCCTTTGGTGTTAAAGTGATACTGCCATCGAGTTCGGCTTGTGAAAAAGGGAAGAAGAGGAAAGCTGCTTCTACCCTGAGACCAAGTGGGGTTATTAAGAGAAAGGTTGCAGATGATGCCTCACCTGCCGTCCTTAGGCGGAGTTCTCGTGTGGCCAACATGAACTTTTGTAAACGTAAACCGTCGTCCAAGGGTGATGTTTATGTTGATCTTAGTGATGGGCCAAGTGTCGACGGGGATGGTATCCCCCTGAGTGATGAGGAGAATGAGTCTGATACTTATGAGGGAAAGACCTGCGATGGTGGTAGCCAGGTGGAGTCTTTTGAAGATGAGGATGGTCAGGGTAATCCAACTGTAGCTTCGATGGGGGAGGATAGCTGCGGTGATAACCAAGGAGCTCATGTTTGTGTCTTGGTGGGGGATTACGAACATAATGTAGCTGGTGCTCTAATGCAGGAATCTGCTATAAATGTTGGCCCTTGTGTAGATAATTGTAATATGCAGGGCGGATCAGATTTGTTAGGGGTTGGAGGGACATTGTTTGAGCCCCACCTCCCTGAGACAGCACCGGGGGACAACGACGTCACTGCGACAATCTTGGGTAGGATTACTGATCTAGAGAGTAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

531

Amino Acids

57.3

Weight (kDa)

6.52

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 53 - 152 8.6e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1096
AasI GACNNNNNNGTC 1 cut(s) 1544
AatII GACGTC 1 cut(s) 1548
Acc16I TGCGCA 1 cut(s) 348
Acc36I ACCTGC 2 cut(s) 1096, 1265
AccI GTMKAC 2 cut(s) 741, 1194
AciI CCGC 6 cut(s) 87, 604, 910, 1102, 1344, 1470
AclWI GGATC 4 cut(s) 558, 571, 794, 1480
AcoI YGGCCR 1 cut(s) 1116
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 825
AcyI GRCGYC 1 cut(s) 1545
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 7 cut(s) 90, 115, 319, 388, 824, 831, 1098
AflII CTTAAG 1 cut(s) 776
AgsI TTSAA 4 cut(s) 235, 629, 916, 1289
AhlI ACTAGT 2 cut(s) 341, 662
AjnI CCWGG 2 cut(s) 435, 1272
AjuI GAANNNNNNNTTGG 2 cut(s) 1306, 1338
AluBI AGCT 7 cut(s) 328, 821, 1028, 1322, 1341, 1361, 1403
AluI AGCT 7 cut(s) 328, 821, 1028, 1322, 1341, 1361, 1403
Alw21I GWGCWC 3 cut(s) 851, 1363, 1411
Alw26I GTCTC 6 cut(s) 74, 151, 545, 670, 1036, 1517
AlwI GGATC 4 cut(s) 558, 571, 794, 1480
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 6 cut(s) 93, 183, 203, 1116, 1184, 1438
ApeKI GCWGC 6 cut(s) 254, 328, 601, 821, 1028, 1341
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 3 cut(s) 93, 1184, 1439
AsuC2I CCSGG 1 cut(s) 1533
AsuHPI GGTGA 6 cut(s) 297, 380, 764, 1077, 1169, 1358
AvaI CYCGRG 1 cut(s) 542
AxyI CCTNAGG 2 cut(s) 921, 1097
BalI TGGCCA 1 cut(s) 1118
BamHI GGATCC 1 cut(s) 563
BanII GRGCYC 2 cut(s) 1363, 1512
BauI CACGAG 1 cut(s) 1110
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 3 cut(s) 851, 1363, 1411
BbvI GCAGC 6 cut(s) 241, 315, 613, 808, 1015, 1328
BceAI ACGGC 1 cut(s) 1076
BcgI CGANNNNNNTGC 2 cut(s) 1532, 1566
BciT130I CCWGG 2 cut(s) 437, 1274
BciVI GTATCC 2 cut(s) 950, 1217
BcnI CCSGG 1 cut(s) 1533
BcoDI GTCTC 6 cut(s) 74, 151, 545, 670, 1036, 1517
BcuI ACTAGT 2 cut(s) 341, 662
BfaI CTAG 6 cut(s) 314, 342, 642, 663, 714, 1580
BfmI CTRYAG 3 cut(s) 30, 517, 1317
BfrI CTTAAG 1 cut(s) 776
BfuAI ACCTGC 2 cut(s) 1096, 1265
BfuI GTATCC 2 cut(s) 950, 1217
BisI GCNGC 7 cut(s) 255, 329, 602, 822, 910, 1029, 1342
BlsI GCNGC 7 cut(s) 256, 330, 603, 823, 911, 1030, 1343
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 3 cut(s) 437, 1274, 1533
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 3 cut(s) 93, 1184, 1439
BmiI GGNNCC 2 cut(s) 94, 565
BmrFI CCNGG 3 cut(s) 437, 1274, 1533
BmsI GCATC 5 cut(s) 128, 438, 460, 492, 1069
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 6 cut(s) 284, 316, 383, 415, 728, 760
BpmI CTGGAG 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 604
BpuMI CCSGG 1 cut(s) 1533
BsaHI GRCGYC 1 cut(s) 1545
BsaI GGTCTC 2 cut(s) 74, 1036
BsaJI CCNNGG 4 cut(s) 876, 1152, 1354, 1532
BsaXI ACNNNNNCTCC 6 cut(s) 1096, 1126, 1217, 1247, 1350, 1380
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 115, 319, 388, 824, 831, 1098
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 2 cut(s) 637, 950
Bse21I CCTNAGG 2 cut(s) 921, 1097
BseBI CCWGG 2 cut(s) 437, 1274
BseDI CCNNGG 4 cut(s) 876, 1152, 1354, 1532
BseGI GGATG 4 cut(s) 445, 886, 1207, 1303
BseLI CCNNNNNNNGG 7 cut(s) 90, 115, 319, 388, 824, 831, 1098
BseMII CTCAG 6 cut(s) 6, 38, 726, 1031, 1205, 1512
BseNI ACTGG 2 cut(s) 637, 950
BseRI GAGGAG 3 cut(s) 128, 393, 1238
BseXI GCAGC 6 cut(s) 241, 315, 613, 808, 1015, 1328
BshFI GGCC 6 cut(s) 95, 185, 205, 1118, 1186, 1440
BsiHKAI GWGCWC 3 cut(s) 851, 1363, 1411
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 3 cut(s) 320, 825, 1532
BslFI GGGAC 3 cut(s) 652, 1510, 1550
BslI CCNNNNNNNGG 7 cut(s) 90, 115, 319, 388, 824, 831, 1098
BsmAI GTCTC 6 cut(s) 74, 151, 545, 670, 1036, 1517
BsmFI GGGAC 3 cut(s) 652, 1510, 1550
BsnI GGCC 6 cut(s) 95, 185, 205, 1118, 1186, 1440
Bso31I GGTCTC 2 cut(s) 74, 1036
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 4 cut(s) 851, 1363, 1411, 1512
Bsp143I GATC 6 cut(s) 563, 799, 934, 1171, 1472, 1576
BspACI CCGC 6 cut(s) 87, 604, 910, 1102, 1344, 1470
BspANI GGCC 6 cut(s) 95, 185, 205, 1118, 1186, 1440
BspCNI CTCAG 6 cut(s) 7, 37, 727, 1032, 1206, 1513
BspHI TCATGA 2 cut(s) 40, 124
BspLI GGNNCC 2 cut(s) 94, 565
BspMAI CTGCAG 1 cut(s) 521
BspMI ACCTGC 2 cut(s) 1096, 1265
BspPI GGATC 4 cut(s) 558, 571, 794, 1480
BspTI CTTAAG 1 cut(s) 776
BspTNI GGTCTC 2 cut(s) 74, 1036
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 2 cut(s) 637, 950
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 4 cut(s) 876, 1152, 1354, 1532
BssMI GATC 6 cut(s) 563, 799, 934, 1171, 1472, 1576
BssNAI GTATAC 1 cut(s) 742
BssNI GRCGYC 1 cut(s) 1545
BssSI CACGAG 1 cut(s) 1110
BssT1I CCWWGG 2 cut(s) 1152, 1354
Bst1107I GTATAC 1 cut(s) 742
Bst2BI CACGAG 1 cut(s) 1110
Bst2UI CCWGG 2 cut(s) 437, 1274
Bst4CI ACNGT 4 cut(s) 309, 689, 1146, 1318
Bst6I CTCTTC 1 cut(s) 1013
BstACI GRCGYC 1 cut(s) 1545
BstAFI CTTAAG 1 cut(s) 776
BstAPI GCANNNNNTGC 1 cut(s) 1079
BstC8I GCNNGC 1 cut(s) 819
BstDEI CTNAG 9 cut(s) 15, 24, 735, 921, 1040, 1097, 1175, 1214, 1521
BstEII GGTNACC 1 cut(s) 770
BstF5I GGATG 4 cut(s) 445, 886, 1207, 1303
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 6 cut(s) 566, 802, 937, 1174, 1475, 1579
BstMAI GTCTC 6 cut(s) 74, 151, 545, 670, 1036, 1517
BstMBI GATC 6 cut(s) 563, 799, 934, 1171, 1472, 1576
BstMWI GCNNNNNNNGC 5 cut(s) 86, 325, 962, 1079, 1088
BstNI CCWGG 2 cut(s) 437, 1274
BstNSI RCATGY 1 cut(s) 366
BstPI GGTNACC 1 cut(s) 770
BstSCI CCNGG 3 cut(s) 435, 1272, 1531
BstSFI CTRYAG 3 cut(s) 30, 517, 1317
BstV1I GCAGC 6 cut(s) 241, 315, 613, 808, 1015, 1328
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
BstZ17I GTATAC 1 cut(s) 742
Bsu36I CCTNAGG 2 cut(s) 921, 1097
BsuI GTATCC 2 cut(s) 950, 1217
BsuRI GGCC 6 cut(s) 95, 185, 205, 1118, 1186, 1440
BtgZI GCGATG 2 cut(s) 432, 1275
BtsCI GGATG 4 cut(s) 445, 886, 1207, 1303
BtsI GCAGTG 1 cut(s) 1548
BtsIMutI CAGTG 1 cut(s) 1548
BveI ACCTGC 2 cut(s) 1096, 1265
Cac8I GCNNGC 1 cut(s) 819
CciI TCATGA 2 cut(s) 40, 124
CfoI GCGC 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 3 cut(s) 93, 1184, 1439
CseI GACGC 1 cut(s) 638
Csp6I GTAC 1 cut(s) 397
CviAII CATG 9 cut(s) 41, 125, 260, 363, 487, 700, 709, 1123, 1364
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 9 cut(s) 15, 24, 735, 921, 1040, 1097, 1175, 1214, 1521
DpnI GATC 6 cut(s) 565, 801, 936, 1173, 1474, 1578
DpnII GATC 6 cut(s) 563, 799, 934, 1171, 1472, 1576
DrdI GACNNNNNNGTC 1 cut(s) 1544
DseDI GACNNNNNNGTC 1 cut(s) 1544
EaeI YGGCCR 1 cut(s) 1116
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
EciI GGCGGA 2 cut(s) 1117, 1485
Ecl136II GAGCTC 1 cut(s) 1361
Eco130I CCWWGG 2 cut(s) 1152, 1354
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 2 cut(s) 1363, 1512
Eco31I GGTCTC 2 cut(s) 74, 1036
Eco53kI GAGCTC 1 cut(s) 1361
Eco57I CTGAAG 1 cut(s) 825
Eco81I CCTNAGG 2 cut(s) 921, 1097
Eco88I CYCGRG 1 cut(s) 542
Eco91I GGTNACC 1 cut(s) 770
EcoICRI GAGCTC 1 cut(s) 1361
EcoO109I RGGNCCY 1 cut(s) 93
EcoO65I GGTNACC 1 cut(s) 770
EcoRII CCWGG 2 cut(s) 435, 1272
EcoT14I CCWWGG 2 cut(s) 1152, 1354
EcoT38I GRGCYC 2 cut(s) 1363, 1512
ErhI CCWWGG 2 cut(s) 1152, 1354
FaeI CATG 9 cut(s) 44, 128, 263, 366, 490, 703, 712, 1126, 1367
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FaqI GGGAC 3 cut(s) 652, 1510, 1550
FatI CATG 9 cut(s) 40, 124, 259, 362, 486, 699, 708, 1122, 1363
FblI GTMKAC 2 cut(s) 741, 1194
Fnu4HI GCNGC 7 cut(s) 255, 329, 602, 822, 910, 1029, 1342
FokI GGATG 4 cut(s) 452, 893, 1214, 1310
FriOI GRGCYC 2 cut(s) 1363, 1512
Fsp4HI GCNGC 7 cut(s) 255, 329, 602, 822, 910, 1029, 1342
FspBI CTAG 6 cut(s) 314, 342, 642, 663, 714, 1580
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 1 cut(s) 348
GluI GCNGC 7 cut(s) 255, 329, 602, 822, 910, 1029, 1342
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 6 cut(s) 95, 185, 205, 1118, 1186, 1440
HapII CCGG 3 cut(s) 320, 825, 1532
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 349
Hin1I GRCGYC 1 cut(s) 1545
Hin1II CATG 9 cut(s) 44, 128, 263, 366, 490, 703, 712, 1126, 1367
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HincII GTYRAC 1 cut(s) 1195
HindII GTYRAC 1 cut(s) 1195
HinfI GANTC 4 cut(s) 17, 1232, 1280, 1421
HpaII CCGG 3 cut(s) 320, 825, 1532
HphI GGTGA 6 cut(s) 297, 380, 764, 1077, 1169, 1358
Hpy166II GTNNAC 5 cut(s) 467, 742, 1136, 1142, 1195
Hpy188I TCNGA 9 cut(s) 16, 176, 242, 501, 535, 654, 877, 1237, 1477
Hpy188III TCNNGA 9 cut(s) 41, 125, 165, 268, 544, 583, 714, 803, 1580
Hpy8I GTNNAC 5 cut(s) 467, 742, 1136, 1142, 1195
Hpy99I CGWCG 3 cut(s) 1150, 1199, 1547
HpyAV CCTTC 6 cut(s) 171, 175, 184, 734, 884, 895
HpyCH4III ACNGT 4 cut(s) 309, 689, 1146, 1318
HpyCH4IV ACGT 2 cut(s) 1138, 1545
HpyCH4V TGCA 7 cut(s) 197, 483, 519, 601, 1073, 1417, 1465
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 325, 962, 1079, 1088
HpyF3I CTNAG 9 cut(s) 15, 24, 735, 921, 1040, 1097, 1175, 1214, 1521
HpySE526I ACGT 2 cut(s) 1138, 1545
Hsp92I GRCGYC 1 cut(s) 1545
Hsp92II CATG 9 cut(s) 44, 128, 263, 366, 490, 703, 712, 1126, 1367
HspAI GCGC 1 cut(s) 347
Kzo9I GATC 6 cut(s) 563, 799, 934, 1171, 1472, 1576
LmnI GCTCC 1 cut(s) 1358
Lsp1109I GCAGC 6 cut(s) 241, 315, 613, 808, 1015, 1328
LweI GCATC 5 cut(s) 128, 438, 460, 492, 1069
MaeI CTAG 6 cut(s) 314, 342, 642, 663, 714, 1580
MaeII ACGT 2 cut(s) 1138, 1545
MaeIII GTNAC 4 cut(s) 296, 368, 770, 1546
MalI GATC 6 cut(s) 565, 801, 936, 1173, 1474, 1578
MboI GATC 6 cut(s) 563, 799, 934, 1171, 1472, 1576
MboII GAAGA 6 cut(s) 12, 74, 559, 1027, 1030, 1301
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 4 cut(s) 851, 1363, 1411, 1512
MlsI TGGCCA 1 cut(s) 1118
MluCI AATT 4 cut(s) 230, 235, 422, 1453
MluNI TGGCCA 1 cut(s) 1118
MlyI GAGTC 3 cut(s) 26, 1241, 1289
MmeI TCCRAC 3 cut(s) 541, 1337, 1471
Mox20I TGGCCA 1 cut(s) 1118
MscI TGGCCA 1 cut(s) 1118
MseI TTAA 5 cut(s) 414, 720, 777, 975, 1059
MslI CAYNNNNRTG 2 cut(s) 698, 1368
Msp20I TGGCCA 1 cut(s) 1118
MspA1I CMGCKG 2 cut(s) 604, 821
MspCI CTTAAG 1 cut(s) 776
MspI CCGG 3 cut(s) 320, 825, 1532
MspR9I CCNGG 3 cut(s) 437, 1274, 1533
MvaI CCWGG 2 cut(s) 437, 1274
MwoI GCNNNNNNNGC 5 cut(s) 86, 325, 962, 1079, 1088
NciI CCSGG 1 cut(s) 1533
NdeII GATC 6 cut(s) 563, 799, 934, 1171, 1472, 1576
NlaIII CATG 9 cut(s) 44, 128, 263, 366, 490, 703, 712, 1126, 1367
NlaIV GGNNCC 2 cut(s) 94, 565
NmuCI GTSAC 3 cut(s) 368, 770, 1546
NsbI TGCGCA 1 cut(s) 348
NspI RCATGY 1 cut(s) 366
PagI TCATGA 2 cut(s) 40, 124
PaqCI CACCTGC 1 cut(s) 1096
PceI AGGCCT 1 cut(s) 205
PfeI GAWTC 1 cut(s) 1421
PkrI GCNGC 7 cut(s) 256, 330, 603, 823, 911, 1030, 1343
PleI GAGTC 3 cut(s) 25, 1240, 1288
PpsI GAGTC 3 cut(s) 25, 1240, 1288
Psp124BI GAGCTC 1 cut(s) 1363
Psp6I CCWGG 2 cut(s) 435, 1272
PspEI GGTNACC 1 cut(s) 770
PspGI CCWGG 2 cut(s) 435, 1272
PspN4I GGNNCC 2 cut(s) 94, 565
PspPI GGNCC 3 cut(s) 93, 1184, 1439
PstI CTGCAG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 563
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 2 cut(s) 698, 1368
SacI GAGCTC 1 cut(s) 1363
SalI GTCGAC 1 cut(s) 1193
SaqAI TTAA 5 cut(s) 414, 720, 777, 975, 1059
SatI GCNGC 7 cut(s) 255, 329, 602, 822, 910, 1029, 1342
Sau3AI GATC 6 cut(s) 563, 799, 934, 1171, 1472, 1576
Sau96I GGNCC 3 cut(s) 93, 1184, 1439
SbfI CCTGCAGG 1 cut(s) 521
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 3 cut(s) 26, 1241, 1289
ScrFI CCNGG 3 cut(s) 437, 1274, 1533
SdaI CCTGCAGG 1 cut(s) 521
SduI GDGCHC 4 cut(s) 851, 1363, 1411, 1512
SfaNI GCATC 5 cut(s) 128, 438, 460, 492, 1069
SfcI CTRYAG 3 cut(s) 30, 517, 1317
SmiMI CAYNNNNRTG 2 cut(s) 698, 1368
SmlI CTYRAG 2 cut(s) 583, 776
SmoI CTYRAG 2 cut(s) 583, 776
SpeI ACTAGT 2 cut(s) 341, 662
Sse8387I CCTGCAGG 1 cut(s) 521
Sse9I AATT 4 cut(s) 230, 235, 422, 1453
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 6 cut(s) 87, 604, 910, 1102, 1344, 1470
SspMI CTAG 6 cut(s) 314, 342, 642, 663, 714, 1580
SstI GAGCTC 1 cut(s) 1363
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 3 cut(s) 435, 1272, 1531
StyI CCWWGG 2 cut(s) 1152, 1354
TaaI ACNGT 4 cut(s) 309, 689, 1146, 1318
TaiI ACGT 2 cut(s) 1141, 1548
TaqI TCGA 5 cut(s) 432, 746, 992, 1194, 1325
TasI AATT 4 cut(s) 230, 235, 422, 1453
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 912
TfiI GAWTC 1 cut(s) 1421
Tru1I TTAA 5 cut(s) 414, 720, 777, 975, 1059
Tru9I TTAA 5 cut(s) 414, 720, 777, 975, 1059
TscAI CASTG 1 cut(s) 1555
TseFI GTSAC 3 cut(s) 368, 770, 1546
TseI GCWGC 6 cut(s) 254, 328, 601, 821, 1028, 1341
Tsp45I GTSAC 3 cut(s) 368, 770, 1546
TspDTI ATGAA 4 cut(s) 29, 148, 770, 1139
TspRI CASTG 1 cut(s) 1555
Vha464I CTTAAG 1 cut(s) 776
XapI RAATTY 1 cut(s) 230
XbaI TCTAGA 2 cut(s) 713, 1579
XceI RCATGY 1 cut(s) 366
XmiI GTMKAC 2 cut(s) 741, 1194
XspI CTAG 6 cut(s) 314, 342, 642, 663, 714, 1580
ZraI GACGTC 1 cut(s) 1546
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.