Rh7DG483900

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000153
Physical Location & Seq
Forward (+)
68965914 .. 68969731
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG483900.1

Sequence Viewer

Length: 1809 bp
ATGGCTCGAGCATATGAGTCTTCTCAGCCCATTGAGCTTCGTGACCACCACTTCTCACTGGAGGATGGTCTCATTCCTACTTCTACCGCGGGGGATTGTGAAGGTAGCTCGGATGAGCCATTTCGTGAATTTTCTGAGCGTTTTGTTTCTTCCAAGTCCATATCCAGATGGTTCAGAAGGAAAGCCAAGAAGGGTGCATTTAAGCCTGATGTCCTAGATGACATTGGACAATTCAATTTCAGGCCGTATTTTACTGTTCACGGTTTCCAGACATTTCCTTTCTTTTATCCAGAGGCTAACTCATCACCATTCTTGGAATCCGTTGAGTTGCTTCTAGCCACTAGTGCGCAGTCCATAATAGCATATGGTGATTTTTTTGACCCTGCGATGGAGATGTATTCCCCCCATAGAGTTAAGAGGCAATTTGGCATCGATCAGGATGTGCCATCGCATCTATCCTACGGTGGACATCTTGGGAATTGCATTATGGCTTTCACTCGGACAGATGGTATCTCTTGCAGCGGTATACTTTCTGATAGTCTTGGGAAGAAGGATAGTGTCGGTTCTCCTACATTAGCATTCTTGGAATTTTGGGAGCTGCAGCTGTGCGAGTTCAAGAGGTTTATTAAGACTGGTAGTACTAGGTTGTGTCCGAAAGTTAGTAGTGAGAACAAGAGGCTGCTCCGCAGTAGCACTGTCATGGGTGTGATGTCTAGACTGAACCTTCCCTATACCGAGGTATACTCGAATGGTATAGAGCGAGTGGTTGGTCATCTTAAAGGTGGGAATGATTCTGTGGCGGACTTGATTACCACAAGAATAGAGAAGGGTGACAAGTCTGTGGTAAAAGGCAAAGTCAGAACTACTAAGAATGGAGAAGAGAGTAAAAGGAAGGTTCACCGCTTCAAACCTAAGGTGGCAAAGGACCGCATTCCTCCCCTGGTTGTCAAAAGCGCCTTTGGTGTTAGAGTGATACTACCATCGGATTTGGTTGATGGAAAAGGGAAGAAGAGGAAAACTGCTTCTAGCTCAAAACAGAGTAGAGCTACTAAGCTAAAGGTTACACGTGATGCCTCACCCACTGTCCTCAGGCGAAGTTCCCGCGTTGCCAACATGAGTTTTTCAAAACGTAAACCTTCGTCTAAGGGCGCTGTTTATGTTGATCTTAGTGATGCGCCAAGTGACGACAGCGAGGGTAGCCCCCTTAGTGATAATGTTGACACATATGAGGAGAATGATTCTGACACTTATGAGGAAAGGGTCTGTGATGATGGTAACCAGCTGGAATCCCTTGAAGATGGGGGTAATGACGATTGGGGTAATCGAAACGTGACTTTGAATGAGGGGGATCACTGCAGTGATAACCCAGACATTGGCACTGATGATTTGGGGAAAGAATCTGTTGCAGATGGTAGCCTTTGCGCGGGTGACCATAATGAGCCGGGTGGATCAGTTTTGTTGACAGTTGGAAGGACATCGTTTGAGCCCCACGTCCCTAAGACAGTACCAAGGGATAATGGTGTTGCTGCTGTAATCTTGACCAATAGAGGGATTCCACTTTGTGCTACCTCCGATTGCTCTCTTGCTCCTAACTCAGATAAATCAGAAAAGGTGTCAAAAGCTGATTTGGAGATGCGTTTTAGGAAATTTACTTCTTCTTTTGACACTGAGGATCGCTTGAGTATTACTATTGATGATATTGCACGCCCATTGAGTAGTATCCAATCTTCATTTGAGGGTGGAAAAGTGCCTTCAGAGTTTGTGGCTCCACTCACTAAATTCGCGGAAAGGTACAAGAAAGCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

602

Amino Acids

66.36

Weight (kDa)

6.85

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 54 - 152 1.6e-06 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 1373
AccI GTMKAC 2 cut(s) 526, 741
AccII CGCG 4 cut(s) 89, 1104, 1424, 1784
AclWI GGATC 3 cut(s) 1356, 1456, 1680
AcsI RAATTY 4 cut(s) 128, 587, 1646, 1778
AcuI CTGAAG 1 cut(s) 1737
AcvI CACGTG 1 cut(s) 1067
AdeI CACNNNGTG 1 cut(s) 1562
AfaI GTAC 3 cut(s) 640, 1506, 1793
AfiI CCNNNNNNNGG 4 cut(s) 388, 1373, 1423, 1548
AflIII ACRYGT 1 cut(s) 1064
AgsI TTSAA 6 cut(s) 235, 616, 907, 1125, 1295, 1339
AhlI ACTAGT 1 cut(s) 341
AjiI CACGTC 1 cut(s) 1492
AjnI CCWGG 1 cut(s) 939
AleI CACNNNNGTG 1 cut(s) 1356
AluBI AGCT 9 cut(s) 37, 108, 598, 604, 1029, 1046, 1054, 1282, 1622
AluI AGCT 9 cut(s) 37, 108, 598, 604, 1029, 1046, 1054, 1282, 1622
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 3 cut(s) 1356, 1456, 1680
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 5 cut(s) 519, 598, 601, 679, 1526
ApoI RAATTY 4 cut(s) 128, 587, 1646, 1778
AspLEI GCGC 5 cut(s) 349, 956, 1151, 1177, 1424
AspS9I GGNCC 1 cut(s) 925
AsuC2I CCSGG 1 cut(s) 1443
AsuHPI GGTGA 6 cut(s) 297, 380, 842, 890, 1068, 1439
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 925
AxyI CCTNAGG 2 cut(s) 912, 1088
BanII GRGCYC 1 cut(s) 1488
BarI GAAGNNNNNNTAC 2 cut(s) 1711, 1743
BbrPI CACGTG 1 cut(s) 1067
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 5 cut(s) 531, 585, 613, 666, 1513
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 941
BciVI GTATCC 1 cut(s) 1730
BcnI CCSGG 1 cut(s) 1443
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 6 cut(s) 215, 335, 342, 642, 714, 1026
BfmI CTRYAG 2 cut(s) 599, 1354
BfoI RGCGCY 2 cut(s) 957, 1152
BfuI GTATCC 1 cut(s) 1730
BisI GCNGC 5 cut(s) 520, 599, 602, 680, 1527
BlsI GCNGC 5 cut(s) 521, 600, 603, 681, 1528
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 2 cut(s) 941, 1443
Bme18I GGWCC 1 cut(s) 925
BmeT110I CYCGRG 1 cut(s) 6
BmgBI CACGTC 1 cut(s) 1492
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 1 cut(s) 1767
BmrFI CCNGG 2 cut(s) 941, 1443
BmsI GCATC 5 cut(s) 438, 460, 1060, 1162, 1623
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 4 cut(s) 284, 316, 728, 760
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 1699
BpuMI CCSGG 1 cut(s) 1443
Bsa29I ATCGAT 1 cut(s) 432
BsaAI YACGTR 1 cut(s) 1067
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 4 cut(s) 87, 735, 939, 1508
Bsc4I CCNNNNNNNGG 4 cut(s) 388, 1373, 1423, 1548
Bse1I ACTGG 2 cut(s) 63, 637
Bse21I CCTNAGG 2 cut(s) 912, 1088
BseBI CCWGG 1 cut(s) 941
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 4 cut(s) 87, 735, 939, 1508
BseGI GGATG 3 cut(s) 70, 118, 445
BseLI CCNNNNNNNGG 4 cut(s) 388, 1373, 1423, 1548
BseMII CTCAG 5 cut(s) 38, 126, 1102, 1608, 1659
BseNI ACTGG 2 cut(s) 63, 637
BseRI GAGGAG 1 cut(s) 1244
BseXI GCAGC 5 cut(s) 531, 585, 613, 666, 1513
Bsh1236I CGCG 4 cut(s) 89, 1104, 1424, 1784
BshFI GGCC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 1442
BslFI GGGAC 1 cut(s) 1478
BslI CCNNNNNNNGG 4 cut(s) 388, 1373, 1423, 1548
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 1478
BsmI GAATGC 2 cut(s) 578, 930
BsnI GGCC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 1488
Bsp143I GATC 5 cut(s) 433, 1162, 1348, 1448, 1672
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 5 cut(s) 37, 127, 1101, 1607, 1660
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 4 cut(s) 89, 1104, 1424, 1784
BspLI GGNNCC 1 cut(s) 1767
BspMAI CTGCAG 2 cut(s) 603, 1358
BspPI GGATC 3 cut(s) 1356, 1456, 1680
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 63, 637
BssECI CCNNGG 4 cut(s) 87, 735, 939, 1508
BssMI GATC 5 cut(s) 433, 1162, 1348, 1448, 1672
BssNAI GTATAC 2 cut(s) 527, 742
BssT1I CCWWGG 1 cut(s) 1508
Bst1107I GTATAC 2 cut(s) 527, 742
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 7 cut(s) 256, 263, 464, 697, 1084, 1465, 1504
Bst6I CTCTTC 2 cut(s) 873, 1004
BstBAI YACGTR 1 cut(s) 1067
BstC8I GCNNGC 1 cut(s) 1705
BstDSI CCRYGG 1 cut(s) 87
BstEII GGTNACC 2 cut(s) 1274, 1427
BstF5I GGATG 3 cut(s) 70, 118, 445
BstFNI CGCG 4 cut(s) 89, 1104, 1424, 1784
BstH2I RGCGCY 2 cut(s) 957, 1152
BstHHI GCGC 5 cut(s) 349, 956, 1151, 1177, 1424
BstKTI GATC 5 cut(s) 436, 1165, 1351, 1451, 1675
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 5 cut(s) 433, 1162, 1348, 1448, 1672
BstMWI GCNNNNNNNGC 3 cut(s) 34, 344, 1197
BstNI CCWGG 1 cut(s) 941
BstPI GGTNACC 2 cut(s) 1274, 1427
BstSCI CCNGG 2 cut(s) 939, 1441
BstSFI CTRYAG 2 cut(s) 599, 1354
BstUI CGCG 4 cut(s) 89, 1104, 1424, 1784
BstV1I GCAGC 5 cut(s) 531, 585, 613, 666, 1513
BstV2I GAAGAC 1 cut(s) 12
BstZ17I GTATAC 2 cut(s) 527, 742
Bsu15I ATCGAT 1 cut(s) 432
Bsu36I CCTNAGG 2 cut(s) 912, 1088
BsuI GTATCC 1 cut(s) 1730
BsuRI GGCC 1 cut(s) 244
BsuTUI ATCGAT 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 2 cut(s) 401, 432
BtrI CACGTC 1 cut(s) 1492
BtsCI GGATG 3 cut(s) 70, 118, 445
BtsI GCAGTG 2 cut(s) 1351, 1363
BtsIMutI CAGTG 7 cut(s) 56, 693, 1080, 1351, 1363, 1377, 1665
Cac8I GCNNGC 1 cut(s) 1705
CfoI GCGC 5 cut(s) 349, 956, 1151, 1177, 1424
Cfr13I GGNCC 1 cut(s) 925
Cfr42I CCGCGG 1 cut(s) 90
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 3 cut(s) 639, 1505, 1792
CviAII CATG 2 cut(s) 700, 1114
CviQI GTAC 3 cut(s) 639, 1505, 1792
DpnI GATC 5 cut(s) 435, 1164, 1350, 1450, 1674
DpnII GATC 5 cut(s) 433, 1162, 1348, 1448, 1672
DraIII CACNNNGTG 1 cut(s) 1562
Eam1104I CTCTTC 2 cut(s) 873, 1004
EarI CTCTTC 2 cut(s) 873, 1004
EciI GGCGGA 1 cut(s) 815
Eco130I CCWWGG 1 cut(s) 1508
Eco24I GRGCYC 1 cut(s) 1488
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 925
Eco57I CTGAAG 1 cut(s) 1737
Eco72I CACGTG 1 cut(s) 1067
Eco81I CCTNAGG 2 cut(s) 912, 1088
Eco88I CYCGRG 1 cut(s) 6
Eco91I GGTNACC 2 cut(s) 1274, 1427
EcoO65I GGTNACC 2 cut(s) 1274, 1427
EcoRII CCWGG 1 cut(s) 939
EcoT14I CCWWGG 1 cut(s) 1508
EcoT38I GRGCYC 1 cut(s) 1488
ErhI CCWWGG 1 cut(s) 1508
FaeI CATG 2 cut(s) 703, 1117
FaqI GGGAC 1 cut(s) 1478
FatI CATG 2 cut(s) 699, 1113
FauI CCCGC 3 cut(s) 82, 1109, 1417
FauNDI CATATG 3 cut(s) 13, 364, 1225
FblI GTMKAC 2 cut(s) 526, 741
Fnu4HI GCNGC 5 cut(s) 520, 599, 602, 680, 1527
FokI GGATG 3 cut(s) 77, 125, 452
FriOI GRGCYC 1 cut(s) 1488
Fsp4HI GCNGC 5 cut(s) 520, 599, 602, 680, 1527
FspBI CTAG 6 cut(s) 215, 335, 342, 642, 714, 1026
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 5 cut(s) 348, 955, 1150, 1176, 1423
GluI GCNGC 5 cut(s) 520, 599, 602, 680, 1527
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 2 cut(s) 957, 1152
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 1442
HhaI GCGC 5 cut(s) 349, 956, 1151, 1177, 1424
Hin1II CATG 2 cut(s) 703, 1117
Hin6I GCGC 5 cut(s) 347, 954, 1149, 1175, 1422
HinP1I GCGC 5 cut(s) 347, 954, 1149, 1175, 1422
HincII GTYRAC 2 cut(s) 1219, 1461
HindII GTYRAC 2 cut(s) 1219, 1461
HinfI GANTC 7 cut(s) 17, 317, 791, 1238, 1286, 1397, 1552
HpaII CCGG 1 cut(s) 1442
HphI GGTGA 6 cut(s) 297, 380, 842, 890, 1068, 1439
Hpy166II GTNNAC 8 cut(s) 259, 467, 527, 742, 898, 1133, 1219, 1461
Hpy188III TCNNGA 9 cut(s) 41, 125, 165, 268, 290, 437, 616, 714, 1537
Hpy8I GTNNAC 8 cut(s) 259, 467, 527, 742, 898, 1133, 1219, 1461
HpyCH4III ACNGT 7 cut(s) 256, 263, 464, 697, 1084, 1465, 1504
HpyCH4IV ACGT 4 cut(s) 1066, 1129, 1329, 1491
HpyCH4V TGCA 7 cut(s) 197, 483, 519, 601, 1356, 1406, 1703
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 344, 1197
HpySE526I ACGT 4 cut(s) 1066, 1129, 1329, 1491
Hsp92II CATG 2 cut(s) 703, 1117
HspAI GCGC 5 cut(s) 347, 954, 1149, 1175, 1422
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 5 cut(s) 433, 1162, 1348, 1448, 1672
LmnI GCTCC 4 cut(s) 595, 687, 1591, 1771
Lsp1109I GCAGC 5 cut(s) 531, 585, 613, 666, 1513
LweI GCATC 5 cut(s) 438, 460, 1060, 1162, 1623
MaeI CTAG 6 cut(s) 215, 335, 342, 642, 714, 1026
MaeII ACGT 4 cut(s) 1066, 1129, 1329, 1491
MaeIII GTNAC 7 cut(s) 41, 830, 1060, 1181, 1274, 1330, 1427
MalI GATC 5 cut(s) 435, 1164, 1350, 1450, 1674
MboI GATC 5 cut(s) 433, 1162, 1348, 1448, 1672
MboII GAAGA 9 cut(s) 12, 141, 559, 890, 1018, 1021, 1307, 1647, 1719
MhlI GDGCHC 1 cut(s) 1488
MluCI AATT 8 cut(s) 128, 230, 235, 422, 478, 587, 1646, 1778
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 1447
MseI TTAA 4 cut(s) 201, 414, 627, 777
MslI CAYNNNNRTG 3 cut(s) 698, 704, 1356
MspA1I CMGCKG 4 cut(s) 89, 522, 604, 1282
MspI CCGG 1 cut(s) 1442
MspR9I CCNGG 2 cut(s) 941, 1443
Mva1269I GAATGC 2 cut(s) 578, 930
MvaI CCWGG 1 cut(s) 941
MvnI CGCG 4 cut(s) 89, 1104, 1424, 1784
MwoI GCNNNNNNNGC 3 cut(s) 34, 344, 1197
NciI CCSGG 1 cut(s) 1443
NdeI CATATG 3 cut(s) 13, 364, 1225
NdeII GATC 5 cut(s) 433, 1162, 1348, 1448, 1672
NlaIII CATG 2 cut(s) 703, 1117
NlaIV GGNNCC 1 cut(s) 1767
NmuCI GTSAC 5 cut(s) 41, 830, 1181, 1330, 1427
NsbI TGCGCA 1 cut(s) 348
OliI CACNNNNGTG 1 cut(s) 1356
PaeR7I CTCGAG 1 cut(s) 6
PctI GAATGC 2 cut(s) 578, 930
PfeI GAWTC 6 cut(s) 317, 791, 1238, 1286, 1397, 1552
PflMI CCANNNNNTGG 1 cut(s) 1373
PkrI GCNGC 5 cut(s) 521, 600, 603, 681, 1528
PleI GAGTC 1 cut(s) 25
PmaCI CACGTG 1 cut(s) 1067
PmlI CACGTG 1 cut(s) 1067
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 1067
Psp6I CCWGG 1 cut(s) 939
PspCI CACGTG 1 cut(s) 1067
PspEI GGTNACC 2 cut(s) 1274, 1427
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 1 cut(s) 1767
PspPI GGNCC 1 cut(s) 925
PspXI VCTCGAGB 1 cut(s) 6
PstI CTGCAG 2 cut(s) 603, 1358
PvuII CAGCTG 2 cut(s) 604, 1282
RsaI GTAC 3 cut(s) 640, 1506, 1793
RsaNI GTAC 3 cut(s) 639, 1505, 1792
RseI CAYNNNNRTG 3 cut(s) 698, 704, 1356
SacII CCGCGG 1 cut(s) 90
SaqAI TTAA 4 cut(s) 201, 414, 627, 777
SatI GCNGC 5 cut(s) 520, 599, 602, 680, 1527
Sau3AI GATC 5 cut(s) 433, 1162, 1348, 1448, 1672
Sau96I GGNCC 1 cut(s) 925
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 941, 1443
SduI GDGCHC 1 cut(s) 1488
SfaNI GCATC 5 cut(s) 438, 460, 1060, 1162, 1623
SfcI CTRYAG 2 cut(s) 599, 1354
Sfr274I CTCGAG 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 90
SgrBI CCGCGG 1 cut(s) 90
SinI GGWCC 1 cut(s) 925
SlaI CTCGAG 1 cut(s) 6
SmiMI CAYNNNNRTG 3 cut(s) 698, 704, 1356
SmlI CTYRAG 2 cut(s) 6, 1678
SmoI CTYRAG 2 cut(s) 6, 1678
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 8 cut(s) 128, 230, 235, 422, 478, 587, 1646, 1778
SspMI CTAG 6 cut(s) 215, 335, 342, 642, 714, 1026
StyD4I CCNGG 2 cut(s) 939, 1441
StyI CCWWGG 1 cut(s) 1508
TaaI ACNGT 7 cut(s) 256, 263, 464, 697, 1084, 1465, 1504
TaiI ACGT 4 cut(s) 1069, 1132, 1332, 1494
TaqI TCGA 4 cut(s) 7, 432, 746, 1324
TasI AATT 8 cut(s) 128, 230, 235, 422, 478, 587, 1646, 1778
TatI WGTACW 1 cut(s) 638
TfiI GAWTC 6 cut(s) 317, 791, 1238, 1286, 1397, 1552
Tru1I TTAA 4 cut(s) 201, 414, 627, 777
Tru9I TTAA 4 cut(s) 201, 414, 627, 777
TscAI CASTG 7 cut(s) 63, 700, 1087, 1358, 1363, 1384, 1672
TseFI GTSAC 5 cut(s) 41, 830, 1181, 1330, 1427
TseI GCWGC 5 cut(s) 519, 598, 601, 679, 1526
Tsp45I GTSAC 5 cut(s) 41, 830, 1181, 1330, 1427
TspDTI ATGAA 1 cut(s) 1719
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 7 cut(s) 63, 700, 1087, 1358, 1363, 1384, 1672
Van91I CCANNNNNTGG 1 cut(s) 1373
VpaK11BI GGWCC 1 cut(s) 925
XapI RAATTY 4 cut(s) 128, 587, 1646, 1778
XbaI TCTAGA 1 cut(s) 713
XhoI CTCGAG 1 cut(s) 6
XmiI GTMKAC 2 cut(s) 526, 741
XspI CTAG 6 cut(s) 215, 335, 342, 642, 714, 1026
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.