Rw1G021670

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000153
Physical Location & Seq
Forward (+)
46015837 .. 46017940
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021670.1

Sequence Viewer

Length: 1557 bp
ATGGCACAAGCATTTGAGTCTTCTTACTCAGAGGAGGCATCTCATGAGTTTTATGGGTGCTTTGTTTCTCCCAAGTTAATATCCAGGTTGCTTATTGAGCTGGGAGAGTACCCTGCAGTGCCTATATGTTTCCGGTATCCTGCGAGGACCCCTGCGGGTTGGCCTGAATGGGTCAGCTTTAAGGTACAACAGGAAGATCTTGAAGAGGCCCTTATTAGAGCTGGAGTGAAGATTTCACTGTTTATTTCCGGCTTTTGTGAGGTTTACAAAGATGACATTTTCCTTCGCCATGTGGTGCGAAGATGGAGTCCTGAAACTCACACGTTCGTCTGCTCTTGGGGGGAATTTACTCCTTCTCTGGAAGATGTTTGCAATATTATGCGAATCCCGATCGTTGGGGATGGTAATACCTTCAAGATAGAGCTAAATAAAGCGCAGAAGAAGAAGCTGCAGATTCTGAAAAAGGGTGCTTATGATTCTAAAGAAGTGTTCTGTTTTTGTTACTGGGTGAGACACTTTTGGGGCTCGACAGATGGAGGCAAGTTTAAGCATGGTGCACGAGTCTTCCCATTGGCCATTATTCTAGCAACCGGTACTTGTTTCCCTCTTGCTCCTATCTCCCTTGAATTCCCATTGTGTTGTAGATGGTTCAGAAGGAAGGCCAAGAAGGGTGCATTTAGGCCTGCTGTTTTGGATGACATTAGGCAGTTCAATTTCAGACCATATTTTACTGCTCATGGCTTCCAGGCATTTCCTTTCTTTTATCCAGAGGGTAATTCATCACCGTTCTTGGAATCGGTTGAGTTGCTTCTTGCCACTAGTGCGCAGTCCATAATAGCATGTGGCGATTTCTTTAACCCTGTGATGGAGAAGCATTCCCCTCATAGAGTTAAGAGGCAGTTTGGCATCGACCAGGATGTGCCATCGCATCTATCTTACGGTGGACATCTTGGGGACTGCATCATGGGTTTCACTCGGATAGATGGTATTTCTTGTAGGGTATGCTCTCAGATAGTCTCGGGAAGAAGGAATGTGTTGGCTCCCCTACATCAACAACGTGTGGTTGGTCATCTTAAAGGTGGGGATGATTTAGAGGTGGACTTGACAAGAACAAAGGAGGGTGACAAGTGTGCAACAAAAGGCAAAGTCAGGCCTTCCGAGAATAGAGAAGAAAGTAAAAAGAAGGTTTGCCGCTTCAAACCTAAGGTGGCAAAGGATCGCATCTCTCCTCTAGTAGTCAAAAGTGCCTTTGGTGTTAGAGTGATACTGCCATCAAGTTTAGCTAATGAAAAATGGAAGAAAAGGAAAGCCGCTTCTTGCTCAAGACCTAGTGGAGCTACTAAGCAAAAGATTACAGTTGATGCCTCACCTGCTGTCCGCAGGCTGAGCTCTCGCGTTGCTAACATGATTTTTTCTAAACCTAAACTGTCGTCTAAGGGCGCTGCTCATGTTGATCTTAGTGACGCGTCAAGTGACGACATCGAAGGTAGCCCCCTTAGTGATAATGTCAGTACACATGAGGAGAATGAATCTGATACTTATGAGGGAGAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

518

Amino Acids

58.12

Weight (kDa)

9.04

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 83 - 151 5e-11 Plant mobile domain
PMD PF10536 210 - 311 3e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1378
Acc16I TGCGCA 1 cut(s) 825
Acc36I ACCTGC 1 cut(s) 1378
AccII CGCG 2 cut(s) 1395, 1466
AciI CCGC 4 cut(s) 155, 1192, 1311, 1378
AclWI GGATC 1 cut(s) 1224
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 2 cut(s) 344, 626
AfaI GTAC 4 cut(s) 110, 186, 595, 1513
AfiI CCNNNNNNNGG 2 cut(s) 395, 865
AflIII ACRYGT 3 cut(s) 321, 1057, 1464
AgeI ACCGGT 1 cut(s) 590
AgsI TTSAA 5 cut(s) 203, 415, 626, 712, 1198
AhlI ACTAGT 1 cut(s) 818
AjnI CCWGG 3 cut(s) 83, 744, 912
AluBI AGCT 8 cut(s) 100, 177, 221, 424, 448, 1283, 1337, 1389
AluI AGCT 8 cut(s) 100, 177, 221, 424, 448, 1283, 1337, 1389
Alw21I GWGCWC 2 cut(s) 559, 1391
Alw26I GTCTC 3 cut(s) 505, 1021, 1544
Alw44I GTGCAC 1 cut(s) 555
AlwI GGATC 1 cut(s) 1224
AlwNI CAGNNNCTG 1 cut(s) 457
Ama87I CYCGRG 1 cut(s) 1018
AoxI GGCC 6 cut(s) 161, 207, 573, 660, 680, 1151
ApaLI GTGCAC 1 cut(s) 555
ApeKI GCWGC 2 cut(s) 448, 1442
ApoI RAATTY 2 cut(s) 344, 626
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AsiGI ACCGGT 1 cut(s) 590
AspLEI GCGC 3 cut(s) 436, 826, 1442
AspS9I GGNCC 2 cut(s) 147, 208
AsuHPI GGTGA 4 cut(s) 520, 774, 1133, 1359
AvaI CYCGRG 1 cut(s) 1018
AvaII GGWCC 1 cut(s) 147
AxyI CCTNAGG 1 cut(s) 1203
BaeGI GKGCMC 1 cut(s) 559
BalI TGGCCA 1 cut(s) 575
BanII GRGCYC 2 cut(s) 527, 1391
BauI CACGAG 1 cut(s) 558
BbsI GAAGAC 2 cut(s) 12, 556
Bbv12I GWGCWC 2 cut(s) 559, 1391
BbvI GCAGC 2 cut(s) 435, 1429
BccI CCATC 8 cut(s) 297, 395, 527, 639, 859, 931, 977, 1279
BciT130I CCWGG 3 cut(s) 85, 746, 914
BciVI GTATCC 1 cut(s) 147
BcoDI GTCTC 3 cut(s) 505, 1021, 1544
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 4 cut(s) 584, 819, 1232, 1329
BfmI CTRYAG 2 cut(s) 114, 449
BfoI RGCGCY 1 cut(s) 1443
BfuAI ACCTGC 1 cut(s) 1378
BfuI GTATCC 1 cut(s) 147
BglII AGATCT 1 cut(s) 196
BisI GCNGC 4 cut(s) 449, 1192, 1311, 1443
BlpI GCTNAGC 1 cut(s) 1385
BlsI GCNGC 4 cut(s) 450, 1193, 1312, 1444
Bme1390I CCNGG 3 cut(s) 85, 746, 914
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 1018
BmgT120I GGNCC 2 cut(s) 147, 208
BmiI GGNNCC 2 cut(s) 149, 1041
BmrFI CCNGG 3 cut(s) 85, 746, 914
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 6 cut(s) 47, 915, 937, 969, 1230, 1351
BmuI ACTGGG 1 cut(s) 514
BpiI GAAGAC 2 cut(s) 12, 556
BpmI CTGGAG 1 cut(s) 243
Bpu1102I GCTNAGC 1 cut(s) 1385
BpuEI CTTGAG 1 cut(s) 1306
BsaI GGTCTC 1 cut(s) 1544
BsaWI WCCGGW 2 cut(s) 132, 590
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 865
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 509
Bse21I CCTNAGG 1 cut(s) 1203
BseBI CCWGG 3 cut(s) 85, 746, 914
BseGI GGATG 4 cut(s) 406, 700, 922, 1090
BseLI CCNNNNNNNGG 2 cut(s) 395, 865
BseMII CTCAG 3 cut(s) 42, 1022, 1376
BseNI ACTGG 1 cut(s) 509
BseRI GAGGAG 3 cut(s) 47, 1218, 1535
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 2 cut(s) 435, 1429
BseYI CCCAGC 1 cut(s) 100
Bsh1236I CGCG 2 cut(s) 1395, 1466
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 6 cut(s) 163, 209, 575, 662, 682, 1153
BshTI ACCGGT 1 cut(s) 590
BsiEI CGRYCG 1 cut(s) 393
BsiHKAI GWGCWC 2 cut(s) 559, 1391
BsiHKCI CYCGRG 1 cut(s) 1018
BsiSI CCGG 3 cut(s) 133, 249, 591
BslFI GGGAC 1 cut(s) 968
BslI CCNNNNNNNGG 2 cut(s) 395, 865
BsmAI GTCTC 3 cut(s) 505, 1021, 1544
BsmFI GGGAC 1 cut(s) 968
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 6 cut(s) 163, 209, 575, 662, 682, 1153
Bso31I GGTCTC 1 cut(s) 1544
BsoBI CYCGRG 1 cut(s) 1018
Bsp1286I GDGCHC 3 cut(s) 527, 559, 1391
Bsp143I GATC 4 cut(s) 196, 390, 1216, 1453
Bsp1720I GCTNAGC 1 cut(s) 1385
BspACI CCGC 4 cut(s) 155, 1192, 1311, 1378
BspANI GGCC 6 cut(s) 163, 209, 575, 662, 682, 1153
BspCNI CTCAG 3 cut(s) 41, 1021, 1377
BspFNI CGCG 2 cut(s) 1395, 1466
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 149, 1041
BspMAI CTGCAG 2 cut(s) 118, 453
BspMI ACCTGC 1 cut(s) 1378
BspPI GGATC 1 cut(s) 1224
BspTNI GGTCTC 1 cut(s) 1544
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 1 cut(s) 509
BssAI RCCGGY 1 cut(s) 590
BssMI GATC 4 cut(s) 196, 390, 1216, 1453
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 3 cut(s) 85, 746, 914
Bst4CI ACNGT 5 cut(s) 240, 786, 941, 1357, 1428
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 684, 1382
BstDEI CTNAG 8 cut(s) 28, 1008, 1203, 1341, 1385, 1434, 1457, 1496
BstF5I GGATG 4 cut(s) 406, 700, 922, 1090
BstFNI CGCG 2 cut(s) 1395, 1466
BstH2I RGCGCY 1 cut(s) 1443
BstHHI GCGC 3 cut(s) 436, 826, 1442
BstKTI GATC 4 cut(s) 199, 393, 1219, 1456
BstMAI GTCTC 3 cut(s) 505, 1021, 1544
BstMBI GATC 4 cut(s) 196, 390, 1216, 1453
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 4 cut(s) 97, 821, 1370, 1386
BstNI CCWGG 3 cut(s) 85, 746, 914
BstNSI RCATGY 1 cut(s) 843
BstSCI CCNGG 3 cut(s) 83, 744, 912
BstSFI CTRYAG 2 cut(s) 114, 449
BstSLI GKGCMC 1 cut(s) 559
BstUI CGCG 2 cut(s) 1395, 1466
BstV1I GCAGC 2 cut(s) 435, 1429
BstV2I GAAGAC 2 cut(s) 12, 556
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
Bsu36I CCTNAGG 1 cut(s) 1203
BsuI GTATCC 1 cut(s) 147
BsuRI GGCC 6 cut(s) 163, 209, 575, 662, 682, 1153
BtgZI GCGATG 1 cut(s) 909
BtsCI GGATG 4 cut(s) 406, 700, 922, 1090
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 236
BveI ACCTGC 1 cut(s) 1378
Cac8I GCNNGC 2 cut(s) 684, 1382
CaiI CAGNNNCTG 1 cut(s) 457
CciI TCATGA 1 cut(s) 43
CfoI GCGC 3 cut(s) 436, 826, 1442
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 2 cut(s) 147, 208
CseI GACGC 2 cut(s) 1455, 1472
Csp6I GTAC 4 cut(s) 109, 185, 594, 1512
CspAI ACCGGT 1 cut(s) 590
CviAII CATG 9 cut(s) 44, 290, 551, 737, 840, 964, 1405, 1448, 1517
CviQI GTAC 4 cut(s) 109, 185, 594, 1512
DdeI CTNAG 8 cut(s) 28, 1008, 1203, 1341, 1385, 1434, 1457, 1496
DpnI GATC 4 cut(s) 198, 392, 1218, 1455
DpnII GATC 4 cut(s) 196, 390, 1216, 1453
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 1389
Eco147I AGGCCT 2 cut(s) 682, 1153
Eco24I GRGCYC 2 cut(s) 527, 1391
Eco31I GGTCTC 1 cut(s) 1544
Eco47I GGWCC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 1389
Eco81I CCTNAGG 1 cut(s) 1203
Eco88I CYCGRG 1 cut(s) 1018
EcoICRI GAGCTC 1 cut(s) 1389
EcoO109I RGGNCCY 2 cut(s) 147, 208
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 3 cut(s) 83, 744, 912
EcoT38I GRGCYC 2 cut(s) 527, 1391
FaeI CATG 9 cut(s) 47, 293, 554, 740, 843, 967, 1408, 1451, 1520
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 1 cut(s) 968
FatI CATG 9 cut(s) 43, 289, 550, 736, 839, 963, 1404, 1447, 1516
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 449, 1192, 1311, 1443
FokI GGATG 4 cut(s) 413, 707, 929, 1097
FriOI GRGCYC 2 cut(s) 527, 1391
Fsp4HI GCNGC 4 cut(s) 449, 1192, 1311, 1443
FspBI CTAG 4 cut(s) 584, 819, 1232, 1329
FspI TGCGCA 1 cut(s) 825
GlaI GCGC 3 cut(s) 435, 825, 1441
GluI GCNGC 4 cut(s) 449, 1192, 1311, 1443
GsaI CCCAGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 1443
HaeIII GGCC 6 cut(s) 163, 209, 575, 662, 682, 1153
HapII CCGG 3 cut(s) 133, 249, 591
HgaI GACGC 2 cut(s) 1455, 1472
HhaI GCGC 3 cut(s) 436, 826, 1442
Hin1II CATG 9 cut(s) 47, 293, 554, 740, 843, 967, 1408, 1451, 1520
Hin6I GCGC 3 cut(s) 434, 824, 1440
HinP1I GCGC 3 cut(s) 434, 824, 1440
HinfI GANTC 8 cut(s) 17, 307, 384, 454, 476, 561, 794, 1529
HpaII CCGG 3 cut(s) 133, 249, 591
HphI GGTGA 4 cut(s) 520, 774, 1133, 1359
Hpy166II GTNNAC 5 cut(s) 265, 557, 944, 1099, 1514
Hpy188I TCNGA 8 cut(s) 31, 459, 653, 719, 978, 1011, 1159, 1534
Hpy188III TCNNGA 9 cut(s) 44, 200, 311, 359, 388, 415, 767, 1020, 1323
Hpy8I GTNNAC 5 cut(s) 265, 557, 944, 1099, 1514
HpyCH4III ACNGT 5 cut(s) 240, 786, 941, 1357, 1428
HpyCH4IV ACGT 2 cut(s) 323, 1057
HpyCH4V TGCA 7 cut(s) 116, 372, 451, 557, 674, 960, 1133
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 821, 1370, 1386
HpyF3I CTNAG 8 cut(s) 28, 1008, 1203, 1341, 1385, 1434, 1457, 1496
HpySE526I ACGT 2 cut(s) 323, 1057
Hsp92II CATG 9 cut(s) 47, 293, 554, 740, 843, 967, 1408, 1451, 1520
HspAI GCGC 3 cut(s) 434, 824, 1440
Kzo9I GATC 4 cut(s) 196, 390, 1216, 1453
LmnI GCTCC 3 cut(s) 616, 1045, 1334
Lsp1109I GCAGC 2 cut(s) 435, 1429
LweI GCATC 6 cut(s) 47, 915, 937, 969, 1230, 1351
MaeI CTAG 4 cut(s) 584, 819, 1232, 1329
MaeII ACGT 2 cut(s) 323, 1057
MaeIII GTNAC 4 cut(s) 500, 1121, 1460, 1472
MalI GATC 4 cut(s) 198, 392, 1218, 1455
MboI GATC 4 cut(s) 196, 390, 1216, 1453
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 3 cut(s) 527, 559, 1391
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 4 cut(s) 344, 626, 712, 775
MluI ACGCGT 1 cut(s) 1464
MluNI TGGCCA 1 cut(s) 575
MlyI GAGTC 3 cut(s) 26, 316, 570
Mox20I TGGCCA 1 cut(s) 575
MscI TGGCCA 1 cut(s) 575
MseI TTAA 6 cut(s) 77, 180, 546, 855, 891, 1074
Msp20I TGGCCA 1 cut(s) 575
MspI CCGG 3 cut(s) 133, 249, 591
MspR9I CCNGG 3 cut(s) 85, 746, 914
Mva1269I GAATGC 1 cut(s) 874
MvaI CCWGG 3 cut(s) 85, 746, 914
MvnI CGCG 2 cut(s) 1395, 1466
MwoI GCNNNNNNNGC 4 cut(s) 97, 821, 1370, 1386
NdeII GATC 4 cut(s) 196, 390, 1216, 1453
NlaIII CATG 9 cut(s) 47, 293, 554, 740, 843, 967, 1408, 1451, 1520
NlaIV GGNNCC 2 cut(s) 149, 1041
NmuCI GTSAC 3 cut(s) 1121, 1460, 1472
NsbI TGCGCA 1 cut(s) 825
NspI RCATGY 1 cut(s) 843
PagI TCATGA 1 cut(s) 43
PaqCI CACCTGC 1 cut(s) 1378
PceI AGGCCT 2 cut(s) 682, 1153
PctI GAATGC 1 cut(s) 874
PfeI GAWTC 5 cut(s) 384, 454, 476, 794, 1529
PinAI ACCGGT 1 cut(s) 590
PkrI GCNGC 4 cut(s) 450, 1193, 1312, 1444
Ple19I CGATCG 1 cut(s) 393
PleI GAGTC 3 cut(s) 25, 315, 569
PpsI GAGTC 3 cut(s) 25, 315, 569
PpuMI RGGWCCY 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 1391
Psp5II RGGWCCY 1 cut(s) 147
Psp6I CCWGG 3 cut(s) 83, 744, 912
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 3 cut(s) 83, 744, 912
PspN4I GGNNCC 2 cut(s) 149, 1041
PspPI GGNCC 2 cut(s) 147, 208
PspPPI RGGWCCY 1 cut(s) 147
PstI CTGCAG 2 cut(s) 118, 453
PstNI CAGNNNCTG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 393
RsaI GTAC 4 cut(s) 110, 186, 595, 1513
RsaNI GTAC 4 cut(s) 109, 185, 594, 1512
SacI GAGCTC 1 cut(s) 1391
SaqAI TTAA 6 cut(s) 77, 180, 546, 855, 891, 1074
SatI GCNGC 4 cut(s) 449, 1192, 1311, 1443
Sau3AI GATC 4 cut(s) 196, 390, 1216, 1453
Sau96I GGNCC 2 cut(s) 147, 208
SchI GAGTC 3 cut(s) 26, 316, 570
ScrFI CCNGG 3 cut(s) 85, 746, 914
SduI GDGCHC 3 cut(s) 527, 559, 1391
SfaNI GCATC 6 cut(s) 47, 915, 937, 969, 1230, 1351
SfcI CTRYAG 2 cut(s) 114, 449
SinI GGWCC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 1321
SmoI CTYRAG 1 cut(s) 1321
SpeI ACTAGT 1 cut(s) 818
Sse9I AATT 4 cut(s) 344, 626, 712, 775
SseBI AGGCCT 2 cut(s) 682, 1153
SsiI CCGC 4 cut(s) 155, 1192, 1311, 1378
SspI AATATT 1 cut(s) 376
SspMI CTAG 4 cut(s) 584, 819, 1232, 1329
SstI GAGCTC 1 cut(s) 1391
StuI AGGCCT 2 cut(s) 682, 1153
StyD4I CCNGG 3 cut(s) 83, 744, 912
TaaI ACNGT 5 cut(s) 240, 786, 941, 1357, 1428
TaiI ACGT 2 cut(s) 326, 1060
TaqI TCGA 3 cut(s) 527, 909, 1482
TasI AATT 4 cut(s) 344, 626, 712, 775
TatI WGTACW 1 cut(s) 1511
TauI GCSGC 2 cut(s) 1194, 1313
TfiI GAWTC 5 cut(s) 384, 454, 476, 794, 1529
Tru1I TTAA 6 cut(s) 77, 180, 546, 855, 891, 1074
Tru9I TTAA 6 cut(s) 77, 180, 546, 855, 891, 1074
TscAI CASTG 2 cut(s) 123, 243
TseFI GTSAC 3 cut(s) 1121, 1460, 1472
TseI GCWGC 2 cut(s) 448, 1442
Tsp45I GTSAC 3 cut(s) 1121, 1460, 1472
TspDTI ATGAA 3 cut(s) 768, 1302, 1542
TspRI CASTG 2 cut(s) 123, 243
VneI GTGCAC 1 cut(s) 555
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 2 cut(s) 344, 626
XceI RCATGY 1 cut(s) 843
XspI CTAG 4 cut(s) 584, 819, 1232, 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.