FvH4_3g40630

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000153
Physical Location & Seq
Reverse (-)
34242735 .. 34243502
768 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40630.t1

Sequence Viewer

Length: 768 bp
ATGGGGAAGATGGTTAACAGGAATATTGATGACCTTATCTGCTCGGAACTATGGGGAACTTATCATGACCGTGGAGCTAAAGCTGCAAATTTGAGAAGACCTAGTGCTCGCTTTAACGTTGGAGGAGGCAAATCAGGCAACAGTCCCGGTACTGTTTCAACCTTGTTCGGTGGAGATGCTTTGTCTTGCAATGCTTCATCATGTTCTCTCTCACCCCACTCAGACAAATCTGAAAAGGGCTCTGACAAATCCGAAAAAGGGTCCTCGATAGTTGATTTGGAGTTGCGACTCAGAAATTTCATTGCTTGTTTTGACGCTGAGGATCACTCAAGTGTTACCATTGATGACATTGCACATCCATTGAGTGGTGATCAGTCTTCTTTCGAGGGCGGAAAAGTCCCGTCGGAGTTTGTGATTCCGCTTACTAAGTTTGCTGACAAGTATGGTGGAGGTAGTTTCTCCAGCTTGTTTGCAAATGGGAAAAGTGTACGTCAGAAGCAAATTCTGATCAAGGAGCTTGGTCGTGTTTTGTATAGCATGGAGGTTCAAGAAGTAAAGTCTGAGGAGACTTTCCTCATTTGGAGGGATGCATGTCGTGACATTATAAGTTGGGGACTCAATGTCGATTTTATGATGGACCATTTGAAACAAGCTGCCAGGAATTTCTTTGGTTATATGCTCAAAGCTGCTATTGCCTCTGATATTGTGGTTTGTATCTTGGAATCTTCATGGACTCCTCAAAGCCGCGCAGTTCAAAGCTTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

256

Amino Acids

27.9

Weight (kDa)

6.22

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 365
AccII CGCG 1 cut(s) 747
AciI CCGC 3 cut(s) 390, 419, 745
AclI AACGTT 1 cut(s) 117
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 4 cut(s) 88, 295, 501, 661
AfaI GTAC 2 cut(s) 151, 489
AfiI CCNNNNNNNGG 2 cut(s) 258, 365
AgsI TTSAA 4 cut(s) 159, 548, 646, 755
AhdI GACNNNNNGTC 1 cut(s) 620
AjnI CCWGG 1 cut(s) 656
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 7 cut(s) 77, 83, 465, 517, 653, 686, 759
AluI AGCT 7 cut(s) 77, 83, 465, 517, 653, 686, 759
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 1 cut(s) 330
ApeKI GCWGC 3 cut(s) 83, 653, 686
ApoI RAATTY 4 cut(s) 88, 295, 501, 661
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 2 cut(s) 261, 637
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 204, 380
AvaII GGWCC 2 cut(s) 261, 637
BanII GRGCYC 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 103, 369
Bbv12I GWGCWC 1 cut(s) 109
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 70, 640, 673
BccI CCATC 2 cut(s) 4, 628
BciT130I CCWGG 1 cut(s) 658
BclI TGATCA 2 cut(s) 370, 507
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 1 cut(s) 102
BisI GCNGC 4 cut(s) 84, 654, 687, 745
BlsI GCNGC 4 cut(s) 85, 655, 688, 746
Bme1390I CCNGG 2 cut(s) 147, 658
Bme18I GGWCC 2 cut(s) 261, 637
BmeRI GACNNNNNGTC 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 261, 637
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 2 cut(s) 147, 658
BmsI GCATC 2 cut(s) 166, 577
BpiI GAAGAC 2 cut(s) 103, 369
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 365
Bse3DI GCAATG 3 cut(s) 196, 300, 348
BseBI CCWGG 1 cut(s) 658
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 355, 592
BseLI CCNNNNNNNGG 2 cut(s) 258, 365
BseMI GCAATG 3 cut(s) 196, 300, 348
BseMII CTCAG 4 cut(s) 234, 304, 309, 552
BseRI GAGGAG 3 cut(s) 138, 578, 726
BseXI GCAGC 3 cut(s) 70, 640, 673
Bsh1236I CGCG 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 3 cut(s) 129, 383, 627
BslI CCNNNNNNNGG 2 cut(s) 258, 365
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 3 cut(s) 129, 383, 627
Bsp1286I GDGCHC 2 cut(s) 109, 242
Bsp143I GATC 3 cut(s) 322, 370, 507
BspACI CCGC 3 cut(s) 390, 419, 745
BspCNI CTCAG 4 cut(s) 233, 303, 310, 553
BspFNI CGCG 1 cut(s) 747
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 1 cut(s) 330
BsrDI GCAATG 3 cut(s) 196, 300, 348
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 322, 370, 507
Bst2UI CCWGG 1 cut(s) 658
Bst4CI ACNGT 3 cut(s) 71, 143, 154
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 5 cut(s) 220, 290, 318, 426, 561
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 2 cut(s) 355, 592
BstFNI CGCG 1 cut(s) 747
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 3 cut(s) 325, 373, 510
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 3 cut(s) 322, 370, 507
BstMWI GCNNNNNNNGC 3 cut(s) 83, 135, 692
BstNI CCWGG 1 cut(s) 658
BstNSI RCATGY 1 cut(s) 594
BstSCI CCNGG 2 cut(s) 145, 656
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 3 cut(s) 70, 640, 673
BstV2I GAAGAC 2 cut(s) 103, 369
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 2 cut(s) 355, 592
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 64
CfoI GCGC 1 cut(s) 749
Cfr13I GGNCC 2 cut(s) 261, 637
CseI GACGC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 150, 488
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 5 cut(s) 65, 201, 538, 591, 729
CviJI RGCY 9 cut(s) 77, 83, 240, 465, 517, 653, 686, 744, 759
CviKI_1 RGCY 9 cut(s) 77, 83, 240, 465, 517, 653, 686, 744, 759
CviQI GTAC 2 cut(s) 150, 488
DdeI CTNAG 5 cut(s) 220, 290, 318, 426, 561
DpnI GATC 3 cut(s) 324, 372, 509
DpnII GATC 3 cut(s) 322, 370, 507
DriI GACNNNNNGTC 1 cut(s) 620
Eam1105I GACNNNNNGTC 1 cut(s) 620
EciI GGCGGA 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 261, 637
EcoO109I RGGNCCY 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 656
EcoT22I ATGCAT 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 5 cut(s) 68, 204, 541, 594, 732
FaqI GGGAC 3 cut(s) 129, 383, 627
FatI CATG 5 cut(s) 64, 200, 537, 590, 728
FbaI TGATCA 2 cut(s) 370, 507
Fnu4HI GCNGC 4 cut(s) 84, 654, 687, 745
FokI GGATG 2 cut(s) 342, 599
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 4 cut(s) 84, 654, 687, 745
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 748
GluI GCNGC 4 cut(s) 84, 654, 687, 745
GsuI CTGGAG 1 cut(s) 445
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 749
Hin1II CATG 5 cut(s) 68, 204, 541, 594, 732
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 5 cut(s) 288, 415, 615, 722, 733
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 204, 380
Hpy166II GTNNAC 2 cut(s) 16, 488
Hpy188III TCNNGA 3 cut(s) 65, 548, 596
Hpy8I GTNNAC 2 cut(s) 16, 488
Hpy99I CGWCG 1 cut(s) 406
HpyCH4III ACNGT 3 cut(s) 71, 143, 154
HpyCH4IV ACGT 2 cut(s) 117, 490
HpyCH4V TGCA 5 cut(s) 86, 189, 353, 473, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 135, 692
HpyF3I CTNAG 5 cut(s) 220, 290, 318, 426, 561
HpySE526I ACGT 2 cut(s) 117, 490
Hsp92II CATG 5 cut(s) 68, 204, 541, 594, 732
HspAI GCGC 1 cut(s) 747
Ksp22I TGATCA 2 cut(s) 370, 507
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 3 cut(s) 322, 370, 507
LmnI GCTCC 2 cut(s) 74, 514
LpnPI CCDG 6 cut(s) 4, 120, 160, 475, 643, 670
Lsp1109I GCAGC 3 cut(s) 70, 640, 673
LweI GCATC 2 cut(s) 166, 577
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 117, 490
MaeIII GTNAC 2 cut(s) 334, 596
MalI GATC 3 cut(s) 324, 372, 509
MboI GATC 3 cut(s) 322, 370, 507
MboII GAAGA 4 cut(s) 19, 108, 369, 717
MhlI GDGCHC 2 cut(s) 109, 242
MluCI AATT 4 cut(s) 88, 295, 501, 661
MlyI GAGTC 3 cut(s) 282, 609, 727
MmeI TCCRAC 2 cut(s) 100, 384
Mph1103I ATGCAT 1 cut(s) 592
MseI TTAA 2 cut(s) 15, 114
MslI CAYNNNNRTG 2 cut(s) 69, 330
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 147, 658
MvaI CCWGG 1 cut(s) 658
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 3 cut(s) 83, 135, 692
NciI CCSGG 1 cut(s) 147
NdeII GATC 3 cut(s) 322, 370, 507
NlaIII CATG 5 cut(s) 68, 204, 541, 594, 732
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 596
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 1 cut(s) 594
OliI CACNNNNGTG 1 cut(s) 330
PagI TCATGA 1 cut(s) 64
PfeI GAWTC 2 cut(s) 415, 722
PflMI CCANNNNNTGG 1 cut(s) 365
PkrI GCNGC 4 cut(s) 85, 655, 688, 746
PleI GAGTC 3 cut(s) 282, 609, 727
PpsI GAGTC 3 cut(s) 282, 609, 727
PpuMI RGGWCCY 1 cut(s) 261
PsiI TTATAA 1 cut(s) 605
Psp1406I AACGTT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 656
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 2 cut(s) 261, 637
PspPPI RGGWCCY 1 cut(s) 261
RsaI GTAC 2 cut(s) 151, 489
RsaNI GTAC 2 cut(s) 150, 488
RseI CAYNNNNRTG 2 cut(s) 69, 330
SaqAI TTAA 2 cut(s) 15, 114
SatI GCNGC 4 cut(s) 84, 654, 687, 745
Sau3AI GATC 3 cut(s) 322, 370, 507
Sau96I GGNCC 2 cut(s) 261, 637
SchI GAGTC 3 cut(s) 282, 609, 727
ScrFI CCNGG 2 cut(s) 147, 658
SduI GDGCHC 2 cut(s) 109, 242
SfaNI GCATC 2 cut(s) 166, 577
SinI GGWCC 2 cut(s) 261, 637
SmiMI CAYNNNNRTG 2 cut(s) 69, 330
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 4 cut(s) 88, 295, 501, 661
SsiI CCGC 3 cut(s) 390, 419, 745
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 145, 656
TaaI ACNGT 3 cut(s) 71, 143, 154
TaiI ACGT 2 cut(s) 120, 493
TaqI TCGA 3 cut(s) 266, 384, 624
TasI AATT 4 cut(s) 88, 295, 501, 661
TauI GCSGC 1 cut(s) 747
TfiI GAWTC 2 cut(s) 415, 722
Tru1I TTAA 2 cut(s) 15, 114
Tru9I TTAA 2 cut(s) 15, 114
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 3 cut(s) 83, 653, 686
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 3 cut(s) 186, 289, 717
Van91I CCANNNNNTGG 1 cut(s) 365
VpaK11BI GGWCC 2 cut(s) 261, 637
XapI RAATTY 4 cut(s) 88, 295, 501, 661
XceI RCATGY 1 cut(s) 594
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.