Rroxscaffold_1G00017530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000153
Physical Location & Seq
Forward (+)
21594899 .. 21596019
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017530.1

Sequence Viewer

Length: 687 bp
ATGTTGGATGATGTAAGTAATTTTATTTGGCAGCCCTATCTCCAGCCTTCCGAGTTTGAGACCTTTTCATTTTTCGGTAGAGAAGAGCGATGCGCTACGGCTCTTGGTCGTGTTGAGCTCTACTTGACTATTCGCCCAAATTTTATCCCATCCATCGGTGAGGATAAGGAGGACTTGGATCTTTTCACCGTTGTTTATTCTCCCGATAGAGTAATACGGCAACTTGGTTACCTTCGGGATATTCCCTCGCCTCCTCCTCGCTCTCTTAACTTGAAGATTATGATTTGTTCTCCTATGAAGCTTAAATGTGTTCGAGCTCTTTGTGGAAGCCGGCAGCCCTCGTTAGAGTTGGGACCTATTACCGGCAATAGGTTGGCTAGTCCCAAGATCGTACCGACTTATTATGAAAAGCATAACCTCACCTATACCGAAGTGTACATCAATGGTACTAGAAAGATTGTCGGTTATTTAAAAGGTTTTGAAGCTAAGAGTGCTAAGAAAGAAGGAAGAAAGCATGACAAGAAGGCAAGTGACAAGGGTAATGTGAAGGAACAAAACACCCAAAAACCTATTCGGCGCTTCAAGCCCAAAGTGGATTTTGATAAGTTCATTCATAAGACACCAAGGGCTATTAAGGGACAAGCCGTGATTGACATGATCACTCTCTTCCCGAAGAAGAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

26.21

Weight (kDa)

9.66

Isoelectric Point (pI)

28.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 3 cut(s) 393, 437, 448
AfiI CCNNNNNNNGG 3 cut(s) 155, 362, 369
AgsI TTSAA 3 cut(s) 274, 482, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 4 cut(s) 118, 301, 317, 485
AluI AGCT 4 cut(s) 118, 301, 317, 485
Alw21I GWGCWC 2 cut(s) 120, 319
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 31, 334
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 2 cut(s) 95, 579
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 170, 178, 412
AvaII GGWCC 1 cut(s) 353
BanII GRGCYC 2 cut(s) 120, 319
Bbv12I GWGCWC 2 cut(s) 120, 319
BbvI GCAGC 2 cut(s) 43, 346
BccI CCATC 2 cut(s) 157, 161
BceAI ACGGC 3 cut(s) 114, 233, 629
BclI TGATCA 1 cut(s) 657
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 378, 450
BfoI RGCGCY 1 cut(s) 580
BisI GCNGC 2 cut(s) 32, 335
BlsI GCNGC 2 cut(s) 33, 336
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 354
BmsI GCATC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 623
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 362, 369
Bse118I RCCGGY 2 cut(s) 330, 362
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 2 cut(s) 13, 149
BseLI CCNNNNNNNGG 3 cut(s) 155, 362, 369
BseRI GAGGAG 2 cut(s) 243, 246
BseXI GCAGC 2 cut(s) 43, 346
BsiHKAI GWGCWC 2 cut(s) 120, 319
BsiSI CCGG 2 cut(s) 331, 363
BslFI GGGAC 3 cut(s) 366, 366, 651
BslI CCNNNNNNNGG 3 cut(s) 155, 362, 369
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 3 cut(s) 366, 366, 651
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 120, 319
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 3 cut(s) 178, 387, 657
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 1 cut(s) 186
BspQI GCTCTTC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 53
BsrFI RCCGGY 2 cut(s) 330, 362
BsrGI TGTACA 1 cut(s) 435
BssAI RCCGGY 2 cut(s) 330, 362
BssECI CCNNGG 1 cut(s) 623
BssMI GATC 3 cut(s) 178, 387, 657
BssT1I CCWWGG 1 cut(s) 623
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 78, 671
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 486, 495
BstEII GGTNACC 1 cut(s) 227
BstF5I GGATG 2 cut(s) 13, 149
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 2 cut(s) 95, 579
BstKTI GATC 3 cut(s) 181, 390, 660
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 178, 387, 657
BstMWI GCNNNNNNNGC 2 cut(s) 491, 583
BstPI GGTNACC 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 43, 346
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 13, 149
Cac8I GCNNGC 1 cut(s) 332
CfoI GCGC 2 cut(s) 95, 579
Cfr10I RCCGGY 2 cut(s) 330, 362
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 3 cut(s) 392, 436, 447
CviAII CATG 2 cut(s) 515, 655
CviQI GTAC 3 cut(s) 392, 436, 447
DdeI CTNAG 2 cut(s) 486, 495
DpnI GATC 3 cut(s) 180, 389, 659
DpnII GATC 3 cut(s) 178, 387, 657
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 78, 671
EarI CTCTTC 2 cut(s) 78, 671
Ecl136II GAGCTC 2 cut(s) 118, 317
Eco130I CCWWGG 1 cut(s) 623
Eco24I GRGCYC 2 cut(s) 120, 319
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 353
Eco53kI GAGCTC 2 cut(s) 118, 317
Eco91I GGTNACC 1 cut(s) 227
EcoICRI GAGCTC 2 cut(s) 118, 317
EcoO109I RGGNCCY 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 623
EcoT38I GRGCYC 2 cut(s) 120, 319
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 2 cut(s) 518, 658
FaiI YATR 8 cut(s) 281, 296, 405, 414, 426, 516, 615, 656
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 3 cut(s) 366, 366, 651
FatI CATG 2 cut(s) 514, 654
FbaI TGATCA 1 cut(s) 657
Fnu4HI GCNGC 2 cut(s) 32, 335
FokI GGATG 2 cut(s) 20, 136
FriOI GRGCYC 2 cut(s) 120, 319
Fsp4HI GCNGC 2 cut(s) 32, 335
FspBI CTAG 2 cut(s) 378, 450
GlaI GCGC 2 cut(s) 94, 578
GluI GCNGC 2 cut(s) 32, 335
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 580
HapII CCGG 2 cut(s) 331, 363
HhaI GCGC 2 cut(s) 95, 579
Hin1II CATG 2 cut(s) 518, 658
Hin6I GCGC 2 cut(s) 93, 577
HinP1I GCGC 2 cut(s) 93, 577
HindIII AAGCTT 1 cut(s) 299
HpaII CCGG 2 cut(s) 331, 363
HphI GGTGA 3 cut(s) 170, 178, 412
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 203, 236, 670
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 6 cut(s) 57, 242, 497, 517, 541, 673
HpyCH4III ACNGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 491, 583
HpyF3I CTNAG 2 cut(s) 486, 495
Hsp92II CATG 2 cut(s) 518, 658
HspAI GCGC 2 cut(s) 93, 577
KroI GCCGGC 1 cut(s) 330
KroNI GCCGGC 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 657
Kzo9I GATC 3 cut(s) 178, 387, 657
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 56, 344, 376
Lsp1109I GCAGC 2 cut(s) 43, 346
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 378, 450
MaeIII GTNAC 2 cut(s) 227, 530
MalI GATC 3 cut(s) 180, 389, 659
MboI GATC 3 cut(s) 178, 387, 657
MboII GAAGA 5 cut(s) 95, 286, 519, 658, 685
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 120, 319
MluCI AATT 2 cut(s) 19, 139
MnlI CCTC 8 cut(s) 154, 163, 256, 261, 264, 267, 349, 428
MroNI GCCGGC 1 cut(s) 330
MseI TTAA 4 cut(s) 267, 303, 470, 633
MspI CCGG 2 cut(s) 331, 363
MwoI GCNNNNNNNGC 2 cut(s) 491, 583
NaeI GCCGGC 1 cut(s) 332
NdeII GATC 3 cut(s) 178, 387, 657
NgoMIV GCCGGC 1 cut(s) 330
NlaIII CATG 2 cut(s) 518, 658
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 332
PkrI GCNGC 2 cut(s) 33, 336
PpuMI RGGWCCY 1 cut(s) 353
Psp124BI GAGCTC 2 cut(s) 120, 319
Psp5II RGGWCCY 1 cut(s) 353
PspEI GGTNACC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 353
PspPPI RGGWCCY 1 cut(s) 353
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 3 cut(s) 393, 437, 448
RsaNI GTAC 3 cut(s) 392, 436, 447
SacI GAGCTC 2 cut(s) 120, 319
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 4 cut(s) 267, 303, 470, 633
SatI GCNGC 2 cut(s) 32, 335
Sau3AI GATC 3 cut(s) 178, 387, 657
Sau96I GGNCC 1 cut(s) 353
SduI GDGCHC 2 cut(s) 120, 319
SfaNI GCATC 1 cut(s) 80
SinI GGWCC 1 cut(s) 353
Sse9I AATT 2 cut(s) 19, 139
SspMI CTAG 2 cut(s) 378, 450
SstI GAGCTC 2 cut(s) 120, 319
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 313
TasI AATT 2 cut(s) 19, 139
TatI WGTACW 1 cut(s) 435
Tru1I TTAA 4 cut(s) 267, 303, 470, 633
Tru9I TTAA 4 cut(s) 267, 303, 470, 633
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 2 cut(s) 31, 334
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 5 cut(s) 57, 311, 420, 598, 602
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 139
XspI CTAG 2 cut(s) 378, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.