RLG00000000571

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000153
Physical Location & Seq
Forward (+)
2099724 .. 2103810
4087 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000571

Sequence Viewer

Length: 2730 bp
ATGTATGATTGGGCTTGGCATTTTGCCTGCTTGTTGGTGTTGGACAGGGGTTACTATGTACTAAAAACCAATTGCTTCTGCTTACGGAAGGGTTTTCTTTTGTTTGTAATGGCTCGAGCATATGAGTCTTCTCAGCCCATTGAGCTTCGTGACCACCACTTCTCACTGGAGGATGGTCTCATTCCTACTTCTACCGCGGGGGATTGTGAAGGTAGCTCAGATGAGCCATTTCGTGAATTTTCTGAGCGTTTTGTTTCTTCCAAGTCCATATCCAGGTTGCTTATTGAGAGAGGAGAGTACCCCGCAGCGCCTATATGTTTCCGGTATCCTGCGAGGATCACTGCGGGTTGGCCAGAATGGGTTAGTTTTGAGGTTCAGCAGGAAGAGCTTGAGGAGGCCCTTATAGGGGCTGGAGTGAAGATTTCACTGTTCATTTCTGGCTTTTGTGAGGTTTACAAAGACGACATTTGCCTCCGCCATGTGATACGGAGATGGAGTCATGAAACTCACACATTCATCTGTTCTTGGGGGGAATTTACTCATTCTCTGGAAGATGTTTGCAATATTATGAGAATCCCAATCATTGGGGATAGTAATCCTTTTAATATAGAGTTGGACAGGGCCCAGAAGAAGAAGCTACAGGTTTTAGAGAAGGGTGCTTATAATTCCAGAGAAGTGTTCCGTTTTTGCAACTGGGTGAGACATTTTTGGGGTTCAACGGATGGAGGCAAGTTTAAGCATGGTGCGGGTTTTGGCTCTGGTTGTCGAGTTGAAGCTATGTTTGCTTATTGGTTGAGCAGGTTTATTTTTGCGGATTTTCCCTATGAGAATGTGCAGCAACGAGTCTTTCCATTGGCCATTATGCTAGCAGCTGGTACTTGTTTTCCGCTTGCTCCTCTCTTTCTTGGTCATCTATACAGGAAGCTTGATCTGATTTCAAAGGATGATAAAGAAGGTGCGGGGCAGTATGGTATTGATTCTTTAGTATCCAGCTTCTTTCTTCAAGTGTTCGTATGGGAGAGATTCAAAGGTTTGGCCGTGGAACCTGTAACCCCGGAGTCCCTTCACCAACTTGAGGGAGGCAAAAGAGATTTCAATCTAGTAGGATTCCCGTTGTGCTGTAGATGGTTCAGAAGGAAAGCCAAGAAGGGTGCATTTAAGCCTGATGTCCTAGATGACATTGGACAATTCAATTTCAGGCCGTATTTTACTGTTCACGGCTTCCAGACATTTCCTTTCTTTTATCCAGAGGCTAACTCATCACCATTCTTGGAATCCGTTGAGTTGCTTCTAGCCACTAGTGCGCAGTCCATAATAGCATATGGTGATTTTTTTGACCCTGCGATGGAGATGTATTCCCCCCATAGAGTTAAGAGGCAATTTGGCATCGATCAGGATGTGCCATCGCATCTATCCTACGGTGGACATCTTGGGAATTGCATTATGGCTTTCACTCGGACAGATGGTATCTCTTGCAGCGGTATACTTTCTGATAGTCTTGGGAAGAAGGATAGTGTCGGTTCTCCTACATTAGCATTCTTGGAATTTTGGGAGCTGCAGCTGTGCGAGTTCAAGAGGTTTATTAAGACTGGTAGTACTAGGTTGTGTCCGAAAGTTAGTAGTGAGAACAAGAGGCTGCTCCGCAGTAGCACTGTCATGGGTGTGATGTCTAGACTGAACCTTCCCTATACCGAGGTATACTCGAATGGTATAGAGCGAGTGGTTGGTCATCTTAAAGGTGGGAATGATTCTGTGGCGGACTTGATTACCACAAGAATAGAGAAGGGTGACAAGTCTGTGGTAAAAGGCAAAGTCAGAACTACTAAGAATGGAGAAGAGAGTAAAAGGAAGGTTCACCGCTTCAAACCTAAGGTGGCAAAGGACCGCATTCCTCCCCTGGTTGTCAAAAGCGCCTTTGGTGTTAGAGTGATACTACCGTCGGATTTGGTTGATGGAAAAGGGAAGAAGAGGAAAACTGCTTCTAGCTCAAAACAGAGTAGAGCTACTAAGCTAAAGGTTACACGTGATGCCTCACCCACTGTCCTCAGGCGAAGTTCCCGCGTTGCCAACATGAGTTTTTCAAAACGTAAACCTTCGTCTAAGGGCGCTGTTTATGTTGATCTTAGTGATGCGCCAAGTGACGACAGCGAGGGTAGCCCCCTTAGTGATAATGTTGACACATATGAGGAGAATGATTCTGACACTTATGAGGAAAGGGTCTGTGATGATGGTAACCAGGGTAATCGAAACGTGACTTTGAATGAGGGGGATCACTGCAGTGATAACCCAGACATTGGCACTGATGATTTGGGGAAAGAATCTGTTGCAGATGGTAGCCTTTGCGCGGGTGACCATAATGAGCCGGGTGGATCAGTTTTGTTGACAGTTGGAAGGACATCGTTTGAGCCCCACGTCCCTAAGACAGTACCAAGGGATAATGGTGTTGCTGCTGTAATCTTGACCAATAGAGGGATTCCACTTTGTGCTACCTCCGATTGCTCTCTTGCTCCTAACTCAGATAAATCAGAAAAGGTGTCAAAAGCTGATTTGGAGATGCGTTTTAGGAAATTTACTTCTTCTTTTGACACTGAGGATCGCTTGAGTACAAGAAAGCAAGATGAGAGTGCTTCTTCATTTATTTGCTGGAAATATTACAAACTTGTAACATCACCATGGTGGCGTATTTACAAAAACTCGGAGATCGAAGTACTGAAGAAGCAATTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

910

Amino Acids

102.39

Weight (kDa)

8.15

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 146 - 471 8.8e-41 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
Acc16I TGCGCA 1 cut(s) 1305
Acc36I ACCTGC 1 cut(s) 789
AccB7I CCANNNNNTGG 2 cut(s) 584, 2294
AccI GTMKAC 2 cut(s) 1483, 1698
AccII CGCG 3 cut(s) 197, 2061, 2345
AclWI GGATC 4 cut(s) 344, 2277, 2377, 2601
AcoI YGGCCR 3 cut(s) 350, 855, 1035
AcsI RAATTY 4 cut(s) 236, 533, 1544, 2567
AcvI CACGTG 1 cut(s) 2024
AdeI CACNNNGTG 1 cut(s) 2483
AfaI GTAC 7 cut(s) 60, 299, 877, 1597, 2427, 2605, 2709
AfiI CCNNNNNNNGG 9 cut(s) 273, 405, 406, 584, 1075, 1345, 2294, 2344, 2469
AflIII ACRYGT 1 cut(s) 2021
AhlI ACTAGT 1 cut(s) 1298
AjiI CACGTC 1 cut(s) 2413
AjnI CCWGG 3 cut(s) 272, 1896, 2235
AleI CACNNNNGTG 2 cut(s) 2277, 2674
Alw26I GTCTC 2 cut(s) 182, 694
AlwI GGATC 4 cut(s) 344, 2277, 2377, 2601
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 6 cut(s) 350, 396, 621, 855, 1035, 1199
ApaI GGGCCC 1 cut(s) 625
ApeKI GCWGC 8 cut(s) 305, 835, 869, 1476, 1555, 1558, 1636, 2447
ApoI RAATTY 4 cut(s) 236, 533, 1544, 2567
Asp700I GAANNNNTTC 1 cut(s) 2720
AspLEI GCGC 6 cut(s) 310, 1306, 1913, 2108, 2134, 2345
AspS9I GGNCC 4 cut(s) 397, 621, 622, 1882
AsuC2I CCSGG 2 cut(s) 1055, 2364
AsuHPI GGTGA 9 cut(s) 709, 1058, 1254, 1337, 1799, 1847, 2025, 2360, 2661
AsuNHI GCTAGC 1 cut(s) 865
AvaI CYCGRG 1 cut(s) 114
AvaII GGWCC 1 cut(s) 1882
AxyI CCTNAGG 2 cut(s) 1869, 2045
BaeGI GKGCMC 1 cut(s) 625
BaeI ACNNNNGTAYC 2 cut(s) 1922, 1955
BalI TGGCCA 2 cut(s) 352, 857
BanII GRGCYC 2 cut(s) 625, 2409
BbrPI CACGTG 1 cut(s) 2024
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 8 cut(s) 317, 847, 881, 1488, 1542, 1570, 1623, 2434
BceAI ACGGC 3 cut(s) 1022, 1186, 1234
BciT130I CCWGG 3 cut(s) 274, 1898, 2237
BciVI GTATCC 2 cut(s) 336, 997
BcnI CCSGG 2 cut(s) 1055, 2364
BcoDI GTCTC 2 cut(s) 182, 694
BcuI ACTAGT 1 cut(s) 1298
BfaI CTAG 8 cut(s) 866, 1100, 1172, 1292, 1299, 1599, 1671, 1983
BfmI CTRYAG 4 cut(s) 638, 1120, 1556, 2275
BfoI RGCGCY 3 cut(s) 311, 1914, 2109
BfuAI ACCTGC 1 cut(s) 789
BfuI GTATCC 2 cut(s) 336, 997
BisI GCNGC 8 cut(s) 306, 836, 870, 1477, 1556, 1559, 1637, 2448
BlsI GCNGC 8 cut(s) 307, 837, 871, 1478, 1557, 1560, 1638, 2449
BmcAI AGTACT 2 cut(s) 1597, 2709
Bme1390I CCNGG 5 cut(s) 274, 1055, 1898, 2237, 2364
Bme18I GGWCC 1 cut(s) 1882
BmeT110I CYCGRG 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 2413
BmgT120I GGNCC 4 cut(s) 397, 621, 622, 1882
BmiI GGNNCC 2 cut(s) 623, 1044
BmrFI CCNGG 5 cut(s) 274, 1055, 1898, 2237, 2364
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 5 cut(s) 1395, 1417, 2017, 2119, 2544
BmtI GCTAGC 1 cut(s) 869
BmuI ACTGGG 1 cut(s) 703
BpiI GAAGAC 1 cut(s) 120
BplI GAGNNNNNCTC 4 cut(s) 1241, 1273, 1685, 1717
BpmI CTGGAG 2 cut(s) 188, 432
BpuEI CTTGAG 3 cut(s) 410, 1094, 2620
BpuMI CCSGG 2 cut(s) 1055, 2364
Bsa29I ATCGAT 1 cut(s) 1389
BsaAI YACGTR 1 cut(s) 2024
BsaBI GATNNNNATC 2 cut(s) 594, 1095
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 8 cut(s) 195, 1038, 1053, 1692, 1896, 2236, 2429, 2672
BsaWI WCCGGW 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 9 cut(s) 273, 405, 406, 584, 1075, 1345, 2294, 2344, 2469
Bse1I ACTGG 3 cut(s) 171, 698, 1594
Bse21I CCTNAGG 2 cut(s) 1869, 2045
Bse8I GATNNNNATC 2 cut(s) 594, 1095
BseBI CCWGG 3 cut(s) 274, 1898, 2237
BseCI ATCGAT 1 cut(s) 1389
BseDI CCNNGG 8 cut(s) 195, 1038, 1053, 1692, 1896, 2236, 2429, 2672
BseGI GGATG 4 cut(s) 178, 727, 949, 1402
BseJI GATNNNNATC 2 cut(s) 594, 1095
BseLI CCNNNNNNNGG 9 cut(s) 273, 405, 406, 584, 1075, 1345, 2294, 2344, 2469
BseMII CTCAG 6 cut(s) 146, 231, 234, 2059, 2529, 2580
BseNI ACTGG 3 cut(s) 171, 698, 1594
BseRI GAGGAG 4 cut(s) 306, 407, 885, 2201
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 8 cut(s) 317, 847, 881, 1488, 1542, 1570, 1623, 2434
BsgI GTGCAG 1 cut(s) 854
Bsh1236I CGCG 3 cut(s) 197, 2061, 2345
BshFI GGCC 6 cut(s) 352, 398, 623, 857, 1037, 1201
BshVI ATCGAT 1 cut(s) 1389
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 3 cut(s) 322, 1055, 2363
BslFI GGGAC 2 cut(s) 1045, 2399
BslI CCNNNNNNNGG 9 cut(s) 273, 405, 406, 584, 1075, 1345, 2294, 2344, 2469
BsmAI GTCTC 2 cut(s) 182, 694
BsmFI GGGAC 2 cut(s) 1045, 2399
BsmI GAATGC 2 cut(s) 1535, 1887
BsnI GGCC 6 cut(s) 352, 398, 623, 857, 1037, 1201
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 114
Bsp120I GGGCCC 1 cut(s) 621
Bsp1286I GDGCHC 2 cut(s) 625, 2409
Bsp143I GATC 8 cut(s) 336, 928, 1390, 2119, 2269, 2369, 2593, 2700
Bsp19I CCATGG 1 cut(s) 2672
BspANI GGCC 6 cut(s) 352, 398, 623, 857, 1037, 1201
BspCNI CTCAG 6 cut(s) 145, 230, 235, 2058, 2528, 2581
BspDI ATCGAT 1 cut(s) 1389
BspFNI CGCG 3 cut(s) 197, 2061, 2345
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 623, 1044
BspMAI CTGCAG 2 cut(s) 1560, 2279
BspMI ACCTGC 1 cut(s) 789
BspOI GCTAGC 1 cut(s) 869
BspPI GGATC 4 cut(s) 344, 2277, 2377, 2601
BspQI GCTCTTC 1 cut(s) 378
BspTNI GGTCTC 1 cut(s) 182
BsrI ACTGG 3 cut(s) 171, 698, 1594
BssECI CCNNGG 8 cut(s) 195, 1038, 1053, 1692, 1896, 2236, 2429, 2672
BssMI GATC 8 cut(s) 336, 928, 1390, 2119, 2269, 2369, 2593, 2700
BssNAI GTATAC 2 cut(s) 1484, 1699
BssT1I CCWWGG 2 cut(s) 2429, 2672
Bst1107I GTATAC 2 cut(s) 1484, 1699
Bst2UI CCWGG 3 cut(s) 274, 1898, 2237
Bst4CI ACNGT 8 cut(s) 429, 1213, 1421, 1654, 1938, 2041, 2386, 2425
Bst6I CTCTTC 3 cut(s) 378, 1830, 1961
BstBAI YACGTR 1 cut(s) 2024
BstC8I GCNNGC 3 cut(s) 28, 867, 891
BstDSI CCRYGG 3 cut(s) 195, 1038, 2672
BstEII GGTNACC 2 cut(s) 2231, 2348
BstF5I GGATG 4 cut(s) 178, 727, 949, 1402
BstFNI CGCG 3 cut(s) 197, 2061, 2345
BstH2I RGCGCY 3 cut(s) 311, 1914, 2109
BstHHI GCGC 6 cut(s) 310, 1306, 1913, 2108, 2134, 2345
BstKTI GATC 8 cut(s) 339, 931, 1393, 2122, 2272, 2372, 2596, 2703
BstMAI GTCTC 2 cut(s) 182, 694
BstMBI GATC 8 cut(s) 336, 928, 1390, 2119, 2269, 2369, 2593, 2700
BstMWI GCNNNNNNNGC 5 cut(s) 142, 385, 782, 1301, 2154
BstNI CCWGG 3 cut(s) 274, 1898, 2237
BstPI GGTNACC 2 cut(s) 2231, 2348
BstSCI CCNGG 5 cut(s) 272, 1053, 1896, 2235, 2362
BstSFI CTRYAG 4 cut(s) 638, 1120, 1556, 2275
BstSLI GKGCMC 1 cut(s) 625
BstUI CGCG 3 cut(s) 197, 2061, 2345
BstV1I GCAGC 8 cut(s) 317, 847, 881, 1488, 1542, 1570, 1623, 2434
BstV2I GAAGAC 1 cut(s) 120
BstZ17I GTATAC 2 cut(s) 1484, 1699
Bsu15I ATCGAT 1 cut(s) 1389
Bsu36I CCTNAGG 2 cut(s) 1869, 2045
BsuI GTATCC 2 cut(s) 336, 997
BsuRI GGCC 6 cut(s) 352, 398, 623, 857, 1037, 1201
BsuTUI ATCGAT 1 cut(s) 1389
BtgI CCRYGG 3 cut(s) 195, 1038, 2672
BtgZI GCGATG 2 cut(s) 1358, 1389
BtrI CACGTC 1 cut(s) 2413
BtsCI GGATG 4 cut(s) 178, 727, 949, 1402
BtsI GCAGTG 3 cut(s) 339, 2272, 2284
BtsIMutI CAGTG 9 cut(s) 164, 339, 425, 1650, 2037, 2272, 2284, 2298, 2586
BveI ACCTGC 1 cut(s) 789
Cac8I GCNNGC 3 cut(s) 28, 867, 891
CciI TCATGA 1 cut(s) 499
CfoI GCGC 6 cut(s) 310, 1306, 1913, 2108, 2134, 2345
Cfr13I GGNCC 4 cut(s) 397, 621, 622, 1882
Cfr42I CCGCGG 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 1389
Csp6I GTAC 7 cut(s) 59, 298, 876, 1596, 2426, 2604, 2708
CviAII CATG 6 cut(s) 479, 500, 740, 1657, 2071, 2673
CviQI GTAC 7 cut(s) 59, 298, 876, 1596, 2426, 2604, 2708
DpnI GATC 8 cut(s) 338, 930, 1392, 2121, 2271, 2371, 2595, 2702
DpnII GATC 8 cut(s) 336, 928, 1390, 2119, 2269, 2369, 2593, 2700
DraIII CACNNNGTG 1 cut(s) 2483
EaeI YGGCCR 3 cut(s) 350, 855, 1035
Eam1104I CTCTTC 3 cut(s) 378, 1830, 1961
EarI CTCTTC 3 cut(s) 378, 1830, 1961
EciI GGCGGA 2 cut(s) 464, 1772
Eco130I CCWWGG 2 cut(s) 2429, 2672
Eco24I GRGCYC 2 cut(s) 625, 2409
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 1882
Eco72I CACGTG 1 cut(s) 2024
Eco81I CCTNAGG 2 cut(s) 1869, 2045
Eco88I CYCGRG 1 cut(s) 114
Eco91I GGTNACC 2 cut(s) 2231, 2348
EcoO109I RGGNCCY 2 cut(s) 397, 621
EcoO65I GGTNACC 2 cut(s) 2231, 2348
EcoRII CCWGG 3 cut(s) 272, 1896, 2235
EcoT14I CCWWGG 2 cut(s) 2429, 2672
EcoT38I GRGCYC 2 cut(s) 625, 2409
ErhI CCWWGG 2 cut(s) 2429, 2672
FaeI CATG 6 cut(s) 482, 503, 743, 1660, 2074, 2676
FalI AAGNNNNNCTT 1 cut(s) 2708
FaqI GGGAC 2 cut(s) 1045, 2399
FatI CATG 6 cut(s) 478, 499, 739, 1656, 2070, 2672
FauI CCCGC 7 cut(s) 190, 310, 337, 739, 952, 2066, 2338
FauNDI CATATG 3 cut(s) 121, 1321, 2182
FblI GTMKAC 2 cut(s) 1483, 1698
Fnu4HI GCNGC 8 cut(s) 306, 836, 870, 1477, 1556, 1559, 1637, 2448
FokI GGATG 4 cut(s) 185, 734, 956, 1409
FriOI GRGCYC 2 cut(s) 625, 2409
Fsp4HI GCNGC 8 cut(s) 306, 836, 870, 1477, 1556, 1559, 1637, 2448
FspBI CTAG 8 cut(s) 866, 1100, 1172, 1292, 1299, 1599, 1671, 1983
FspI TGCGCA 1 cut(s) 1305
GlaI GCGC 6 cut(s) 309, 1305, 1912, 2107, 2133, 2344
GluI GCNGC 8 cut(s) 306, 836, 870, 1477, 1556, 1559, 1637, 2448
GsuI CTGGAG 2 cut(s) 188, 432
HaeII RGCGCY 3 cut(s) 311, 1914, 2109
HaeIII GGCC 6 cut(s) 352, 398, 623, 857, 1037, 1201
HapII CCGG 3 cut(s) 322, 1055, 2363
HhaI GCGC 6 cut(s) 310, 1306, 1913, 2108, 2134, 2345
Hin1II CATG 6 cut(s) 482, 503, 743, 1660, 2074, 2676
Hin6I GCGC 6 cut(s) 308, 1304, 1911, 2106, 2132, 2343
HinP1I GCGC 6 cut(s) 308, 1304, 1911, 2106, 2132, 2343
HincII GTYRAC 2 cut(s) 2176, 2382
HindII GTYRAC 2 cut(s) 2176, 2382
HindIII AAGCTT 1 cut(s) 923
HpaII CCGG 3 cut(s) 322, 1055, 2363
HphI GGTGA 9 cut(s) 709, 1058, 1254, 1337, 1799, 1847, 2025, 2360, 2661
Hpy166II GTNNAC 9 cut(s) 454, 1216, 1424, 1484, 1699, 1855, 2090, 2176, 2382
Hpy8I GTNNAC 9 cut(s) 454, 1216, 1424, 1484, 1699, 1855, 2090, 2176, 2382
Hpy99I CGWCG 1 cut(s) 1942
HpyCH4III ACNGT 8 cut(s) 429, 1213, 1421, 1654, 1938, 2041, 2386, 2425
HpyCH4IV ACGT 4 cut(s) 2023, 2086, 2250, 2412
HpyCH4V TGCA 9 cut(s) 561, 690, 835, 1154, 1440, 1476, 1558, 2277, 2327
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 385, 782, 1301, 2154
HpySE526I ACGT 4 cut(s) 2023, 2086, 2250, 2412
Hsp92II CATG 6 cut(s) 482, 503, 743, 1660, 2074, 2676
HspAI GCGC 6 cut(s) 308, 1304, 1911, 2106, 2132, 2343
KspI CCGCGG 1 cut(s) 198
Kzo9I GATC 8 cut(s) 336, 928, 1390, 2119, 2269, 2369, 2593, 2700
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 4 cut(s) 898, 1552, 1644, 2512
Lsp1109I GCAGC 8 cut(s) 317, 847, 881, 1488, 1542, 1570, 1623, 2434
LweI GCATC 5 cut(s) 1395, 1417, 2017, 2119, 2544
MaeI CTAG 8 cut(s) 866, 1100, 1172, 1292, 1299, 1599, 1671, 1983
MaeII ACGT 4 cut(s) 2023, 2086, 2250, 2412
MalI GATC 8 cut(s) 338, 930, 1392, 2121, 2271, 2371, 2595, 2702
MboI GATC 8 cut(s) 336, 928, 1390, 2119, 2269, 2369, 2593, 2700
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 625, 2409
MlsI TGGCCA 2 cut(s) 352, 857
MluNI TGGCCA 2 cut(s) 352, 857
MlyI GAGTC 4 cut(s) 134, 505, 852, 1067
MmeI TCCRAC 4 cut(s) 21, 594, 1920, 2368
Mox20I TGGCCA 2 cut(s) 352, 857
MroXI GAANNNNTTC 1 cut(s) 2720
MscI TGGCCA 2 cut(s) 352, 857
MseI TTAA 6 cut(s) 603, 735, 1158, 1371, 1584, 1734
MslI CAYNNNNRTG 5 cut(s) 1655, 1661, 2277, 2671, 2674
Msp20I TGGCCA 2 cut(s) 352, 857
MspA1I CMGCKG 4 cut(s) 197, 872, 1479, 1561
MspI CCGG 3 cut(s) 322, 1055, 2363
MspR9I CCNGG 5 cut(s) 274, 1055, 1898, 2237, 2364
MunI CAATTG 1 cut(s) 70
Mva1269I GAATGC 2 cut(s) 1535, 1887
MvaI CCWGG 3 cut(s) 274, 1898, 2237
MvnI CGCG 3 cut(s) 197, 2061, 2345
MwoI GCNNNNNNNGC 5 cut(s) 142, 385, 782, 1301, 2154
NciI CCSGG 2 cut(s) 1055, 2364
NcoI CCATGG 1 cut(s) 2672
NdeI CATATG 3 cut(s) 121, 1321, 2182
NdeII GATC 8 cut(s) 336, 928, 1390, 2119, 2269, 2369, 2593, 2700
NheI GCTAGC 1 cut(s) 865
NlaIII CATG 6 cut(s) 482, 503, 743, 1660, 2074, 2676
NlaIV GGNNCC 2 cut(s) 623, 1044
NmuCI GTSAC 5 cut(s) 149, 1787, 2138, 2251, 2348
NsbI TGCGCA 1 cut(s) 1305
OliI CACNNNNGTG 2 cut(s) 2277, 2674
PaeR7I CTCGAG 1 cut(s) 114
PagI TCATGA 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 378
PctI GAATGC 2 cut(s) 1535, 1887
PdmI GAANNNNTTC 1 cut(s) 2720
PfeI GAWTC 9 cut(s) 573, 977, 1023, 1107, 1274, 1748, 2195, 2318, 2473
PflMI CCANNNNNTGG 2 cut(s) 584, 2294
PkrI GCNGC 8 cut(s) 307, 837, 871, 1478, 1557, 1560, 1638, 2449
PleI GAGTC 4 cut(s) 133, 504, 851, 1066
PmaCI CACGTG 1 cut(s) 2024
PmlI CACGTG 1 cut(s) 2024
PpsI GAGTC 4 cut(s) 133, 504, 851, 1066
Ppu21I YACGTR 1 cut(s) 2024
PsiI TTATAA 1 cut(s) 663
Psp6I CCWGG 3 cut(s) 272, 1896, 2235
PspCI CACGTG 1 cut(s) 2024
PspEI GGTNACC 2 cut(s) 2231, 2348
PspGI CCWGG 3 cut(s) 272, 1896, 2235
PspN4I GGNNCC 2 cut(s) 623, 1044
PspOMI GGGCCC 1 cut(s) 621
PspPI GGNCC 4 cut(s) 397, 621, 622, 1882
PspXI VCTCGAGB 1 cut(s) 114
PstI CTGCAG 2 cut(s) 1560, 2279
PvuII CAGCTG 2 cut(s) 872, 1561
RsaI GTAC 7 cut(s) 60, 299, 877, 1597, 2427, 2605, 2709
RsaNI GTAC 7 cut(s) 59, 298, 876, 1596, 2426, 2604, 2708
RseI CAYNNNNRTG 5 cut(s) 1655, 1661, 2277, 2671, 2674
SacII CCGCGG 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 6 cut(s) 603, 735, 1158, 1371, 1584, 1734
SatI GCNGC 8 cut(s) 306, 836, 870, 1477, 1556, 1559, 1637, 2448
Sau3AI GATC 8 cut(s) 336, 928, 1390, 2119, 2269, 2369, 2593, 2700
Sau96I GGNCC 4 cut(s) 397, 621, 622, 1882
ScaI AGTACT 2 cut(s) 1597, 2709
SchI GAGTC 4 cut(s) 134, 505, 852, 1067
ScrFI CCNGG 5 cut(s) 274, 1055, 1898, 2237, 2364
SduI GDGCHC 2 cut(s) 625, 2409
SfaNI GCATC 5 cut(s) 1395, 1417, 2017, 2119, 2544
SfcI CTRYAG 4 cut(s) 638, 1120, 1556, 2275
Sfr274I CTCGAG 1 cut(s) 114
Sfr303I CCGCGG 1 cut(s) 198
SgrBI CCGCGG 1 cut(s) 198
SinI GGWCC 1 cut(s) 1882
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 5 cut(s) 1655, 1661, 2277, 2671, 2674
SmlI CTYRAG 4 cut(s) 114, 389, 1073, 2599
SmoI CTYRAG 4 cut(s) 114, 389, 1073, 2599
SpeI ACTAGT 1 cut(s) 1298
SspI AATATT 2 cut(s) 565, 2651
SspMI CTAG 8 cut(s) 866, 1100, 1172, 1292, 1299, 1599, 1671, 1983
StyD4I CCNGG 5 cut(s) 272, 1053, 1896, 2235, 2362
StyI CCWWGG 2 cut(s) 2429, 2672
TaaI ACNGT 8 cut(s) 429, 1213, 1421, 1654, 1938, 2041, 2386, 2425
TaiI ACGT 4 cut(s) 2026, 2089, 2253, 2415
TaqI TCGA 6 cut(s) 115, 766, 1389, 1703, 2245, 2703
TatI WGTACW 4 cut(s) 58, 1595, 2603, 2707
TfiI GAWTC 9 cut(s) 573, 977, 1023, 1107, 1274, 1748, 2195, 2318, 2473
Tru1I TTAA 6 cut(s) 603, 735, 1158, 1371, 1584, 1734
Tru9I TTAA 6 cut(s) 603, 735, 1158, 1371, 1584, 1734
TscAI CASTG 9 cut(s) 171, 346, 432, 1657, 2044, 2279, 2284, 2305, 2593
TseFI GTSAC 5 cut(s) 149, 1787, 2138, 2251, 2348
TseI GCWGC 8 cut(s) 305, 835, 869, 1476, 1555, 1558, 1636, 2447
Tsp45I GTSAC 5 cut(s) 149, 1787, 2138, 2251, 2348
TspDTI ATGAA 4 cut(s) 421, 505, 516, 2622
TspGWI ACGGA 5 cut(s) 100, 502, 671, 734, 1267
TspRI CASTG 9 cut(s) 171, 346, 432, 1657, 2044, 2279, 2284, 2305, 2593
Van91I CCANNNNNTGG 2 cut(s) 584, 2294
VpaK11BI GGWCC 1 cut(s) 1882
XapI RAATTY 4 cut(s) 236, 533, 1544, 2567
XbaI TCTAGA 1 cut(s) 1670
XhoI CTCGAG 1 cut(s) 114
XmiI GTMKAC 2 cut(s) 1483, 1698
XmnI GAANNNNTTC 1 cut(s) 2720
XspI CTAG 8 cut(s) 866, 1100, 1172, 1292, 1299, 1599, 1671, 1983
ZrmI AGTACT 2 cut(s) 1597, 2709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.